Wall clock time and date at job start Tue Mar 31 2020 20:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47101 * 2 1 4 4 C 1.52999 * 109.47057 * 239.99901 * 2 1 3 5 5 N 1.46494 * 109.47251 * 120.00010 * 2 1 3 6 6 N 1.28722 * 125.32019 * 359.97438 * 5 2 1 7 7 N 1.28978 * 108.99251 * 179.97438 * 6 5 2 8 8 C 1.34188 * 107.25210 * 359.97438 * 7 6 5 9 9 C 1.48001 * 126.70253 * 179.97438 * 8 7 6 10 10 O 1.21543 * 120.00033 * 180.02562 * 9 8 7 11 11 N 1.34773 * 119.99984 * 0.29870 * 9 8 7 12 12 C 1.46505 * 120.00095 * 179.72370 * 11 9 8 13 13 C 1.53005 * 109.46904 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.46696 * 180.02562 * 13 12 11 15 15 H 1.08995 * 110.63921 * 305.69830 * 14 13 12 16 16 C 1.55159 * 110.71790 * 182.55535 * 14 13 12 17 17 C 1.54909 * 101.58328 * 206.13630 * 16 14 13 18 18 N 1.47423 * 104.82974 * 37.00760 * 17 16 14 19 19 C 1.36936 * 125.64541 * 155.90948 * 18 17 16 20 20 H 1.08006 * 119.99963 * 179.97438 * 19 18 17 21 21 C 1.38815 * 120.00210 * 359.97438 * 19 18 17 22 22 N 1.31622 * 119.99617 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 119.99985 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47359 * 60.00329 * 23 21 19 25 25 H 1.48506 * 109.47038 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47307 * 299.99698 * 23 21 19 27 27 C 1.47321 * 108.74023 * 335.71516 * 18 17 16 28 28 N 1.28864 * 125.32383 * 180.26435 * 5 2 1 29 29 H 1.09001 * 109.46933 * 299.99949 * 1 2 3 30 30 H 1.09000 * 109.46944 * 59.99908 * 1 2 3 31 31 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47149 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.47297 * 299.99877 * 3 2 1 34 34 H 1.08998 * 109.47405 * 59.99723 * 3 2 1 35 35 H 1.09000 * 109.47460 * 300.00014 * 4 2 1 36 36 H 1.09000 * 109.47087 * 60.00278 * 4 2 1 37 37 H 1.09001 * 109.47127 * 179.97438 * 4 2 1 38 38 H 0.97000 * 120.00112 * 359.72805 * 11 9 8 39 39 H 1.09003 * 109.46699 * 299.99996 * 12 11 9 40 40 H 1.08993 * 109.47199 * 60.00009 * 12 11 9 41 41 H 1.09003 * 109.46508 * 299.99548 * 13 12 11 42 42 H 1.08993 * 109.47679 * 59.99698 * 13 12 11 43 43 H 1.09006 * 111.00075 * 324.20952 * 16 14 13 44 44 H 1.08999 * 111.00291 * 88.01843 * 16 14 13 45 45 H 1.08995 * 110.37024 * 155.84655 * 17 16 14 46 46 H 1.09007 * 110.36233 * 278.06274 * 17 16 14 47 47 H 0.97002 * 119.99397 * 179.97438 * 22 21 19 48 48 H 1.08994 * 110.06781 * 241.87028 * 27 18 17 49 49 H 1.08999 * 109.84531 * 120.60895 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0184 -0.6906 1.1961 6 7 1.2763 -1.2160 2.1072 7 7 2.0307 -1.7397 3.0128 8 6 3.3029 -1.5276 2.6423 9 6 4.5190 -1.9500 3.3725 10 8 5.6183 -1.6916 2.9231 11 7 4.4074 -2.6261 4.5331 12 6 5.6111 -3.0495 5.2528 13 6 5.2079 -3.7923 6.5283 14 6 6.4650 -4.2340 7.2802 15 1 7.1182 -4.8147 6.6289 16 6 6.0896 -5.0469 8.5474 17 6 7.3202 -4.7958 9.4540 18 7 7.7020 -3.3960 9.1928 19 6 8.3992 -2.5860 10.0488 20 1 8.6311 -1.5705 9.7630 21 6 8.8081 -3.0698 11.2840 22 7 8.5251 -4.3071 11.6326 23 14 9.7586 -1.9645 12.4520 24 1 8.9358 -0.7747 12.7874 25 1 10.0759 -2.7137 13.6944 26 1 11.0204 -1.5268 11.8027 27 6 7.2136 -3.0137 7.8565 28 7 3.2580 -0.8624 1.5034 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2495 38 1 3.5301 -2.8324 4.8918 39 1 6.2000 -3.7116 4.6179 40 1 6.2050 -2.1739 5.5143 41 1 4.6188 -3.1305 7.1632 42 1 4.6141 -4.6681 6.2665 43 1 5.1805 -4.6578 9.0060 44 1 5.9845 -6.1066 8.3148 45 1 7.0521 -4.9265 10.5024 46 1 8.1338 -5.4693 9.1843 47 1 8.8111 -4.6453 12.4956 48 1 8.0531 -2.7551 7.2113 49 1 6.5327 -2.1666 7.9398 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317790643.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:06 Heat of formation + Delta-G solvation = 84.929437 kcal Electronic energy + Delta-G solvation = -28369.964759 eV Core-core repulsion = 24369.893777 eV Total energy + Delta-G solvation = -4000.070983 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.62474 -40.89403 -39.38043 -38.62917 -36.63431 -34.90542 -34.63817 -33.68142 -32.42165 -30.71477 -28.74919 -28.54490 -28.31453 -26.95326 -25.83148 -25.61148 -23.57348 -22.33884 -21.91198 -21.66802 -20.79000 -19.13883 -18.86810 -18.58381 -17.73768 -17.26686 -17.03997 -16.65044 -16.25948 -15.66952 -15.39205 -15.28218 -15.25964 -15.08251 -14.83500 -14.24263 -14.06961 -13.79621 -13.52684 -13.47984 -13.33091 -13.28930 -13.23408 -13.11926 -12.85333 -12.81052 -12.66939 -12.64809 -12.38196 -12.24751 -12.13139 -12.12225 -12.02194 -11.83111 -11.72874 -11.49801 -11.42466 -11.38268 -11.18085 -10.71751 -10.29531 -8.85248 -7.75557 -5.19502 -0.18804 0.22737 0.61960 1.45746 1.49191 1.55577 1.64572 1.84289 2.50721 2.76614 2.93466 3.33022 3.47721 3.55927 3.63331 3.74091 3.77364 3.95722 3.97351 4.19068 4.27619 4.33671 4.36199 4.40786 4.51886 4.58122 4.59892 4.65604 4.71858 4.72511 4.72732 4.76736 4.90858 5.00261 5.01697 5.10417 5.11486 5.16429 5.18159 5.21874 5.26768 5.28900 5.45902 5.54737 5.72357 5.86270 6.18267 6.34723 6.80853 7.01523 7.13642 7.81875 8.45729 9.25758 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026195 B = 0.001736 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.652406 B =16128.420047 C =16550.207667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.159 3.841 3 C -0.158 4.158 4 C -0.157 4.157 5 N -0.109 5.109 6 N -0.057 5.057 7 N -0.265 5.265 8 C 0.113 3.887 9 C 0.615 3.385 10 O -0.546 6.546 11 N -0.687 5.687 12 C 0.123 3.877 13 C -0.102 4.102 14 C -0.083 4.083 15 H 0.083 0.917 16 C -0.122 4.122 17 C 0.149 3.851 18 N -0.629 5.629 19 C -0.240 4.240 20 H 0.077 0.923 21 C -0.070 4.070 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.131 3.869 28 N -0.260 5.260 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.129 0.871 37 H 0.062 0.938 38 H 0.422 0.578 39 H 0.077 0.923 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.100 0.900 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.070 0.930 46 H -0.017 1.017 47 H 0.247 0.753 48 H 0.015 0.985 49 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.298 6.989 -28.614 36.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.081 3.919 3 C -0.217 4.217 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.049 5.049 7 N -0.139 5.139 8 C -0.170 4.170 9 C 0.395 3.605 10 O -0.421 6.421 11 N -0.340 5.340 12 C 0.000 4.000 13 C -0.140 4.140 14 C -0.102 4.102 15 H 0.101 0.899 16 C -0.160 4.160 17 C 0.024 3.976 18 N -0.356 5.356 19 C -0.370 4.370 20 H 0.094 0.906 21 C -0.262 4.262 22 N -0.598 5.598 23 Si 0.808 3.192 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.006 3.994 28 N -0.114 5.114 29 H 0.088 0.912 30 H 0.145 0.855 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.147 0.853 37 H 0.081 0.919 38 H 0.260 0.740 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.118 0.882 43 H 0.085 0.915 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.001 0.999 47 H 0.056 0.944 48 H 0.033 0.967 49 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -21.024 7.251 -28.856 36.432 hybrid contribution 1.196 0.275 1.311 1.796 sum -19.828 7.525 -27.545 34.764 Atomic orbital electron populations 1.22183 0.87837 1.04851 1.05904 1.22220 0.98123 0.93310 0.78257 1.22315 1.02510 0.91166 1.05688 1.22309 1.02509 1.01209 0.95544 1.51322 0.99999 1.32870 1.18384 1.78808 1.21483 1.08980 0.95637 1.76097 0.99693 1.18152 1.19982 1.25165 0.94524 1.03248 0.94091 1.16222 0.84416 0.78669 0.81165 1.90850 1.26673 1.56511 1.68022 1.45642 1.12145 1.54999 1.21189 1.21550 0.85915 0.99445 0.93070 1.21663 0.97092 1.01211 0.94068 1.22001 0.96452 0.95694 0.96088 0.89886 1.22879 0.97928 1.00058 0.95179 1.21755 0.92386 0.83664 0.99792 1.44930 1.64849 1.10877 1.14904 1.19425 1.26839 0.94591 0.96107 0.90557 1.25639 1.02826 0.98129 0.99596 1.70064 1.52096 1.15862 1.21794 0.85130 0.78448 0.77709 0.77910 1.20268 1.21727 1.20681 1.21658 0.95445 0.96492 0.85766 1.74963 1.04121 1.17071 1.15214 0.91173 0.85510 0.91010 0.91878 0.85275 0.91997 0.91801 0.85305 0.91860 0.74040 0.90459 0.92020 0.90617 0.88162 0.91456 0.89522 0.91151 0.99874 0.94376 0.96698 0.95475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 7.90 71.98 0.57 -0.05 16 2 C 0.16 1.40 1.30 3.60 0.00 1.41 16 3 C -0.16 -1.04 8.66 71.98 0.62 -0.42 16 4 C -0.16 -0.95 8.66 71.98 0.62 -0.33 16 5 N -0.11 -2.00 3.72 -152.27 -0.57 -2.57 16 6 N -0.06 -1.19 12.21 37.02 0.45 -0.74 16 7 N -0.26 -6.32 12.26 -52.36 -0.64 -6.96 16 8 C 0.11 2.94 8.14 137.15 1.12 4.05 16 9 C 0.62 17.13 7.84 86.83 0.68 17.81 16 10 O -0.55 -18.98 17.10 -3.85 -0.07 -19.05 16 11 N -0.69 -15.51 5.55 -465.80 -2.59 -18.10 16 12 C 0.12 2.95 5.54 86.38 0.48 3.43 16 13 C -0.10 -2.33 4.72 30.60 0.14 -2.19 16 14 C -0.08 -2.62 2.95 -9.60 -0.03 -2.64 16 15 H 0.08 2.49 8.14 -2.39 -0.02 2.48 16 16 C -0.12 -4.33 6.54 31.99 0.21 -4.12 16 17 C 0.15 7.46 5.89 86.86 0.51 7.98 16 18 N -0.63 -33.49 3.40 -691.23 -2.35 -35.84 16 19 C -0.24 -14.00 10.28 84.03 0.86 -13.14 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 21 C -0.07 -4.06 5.49 84.86 0.47 -3.60 16 22 N -0.95 -57.79 10.09 21.65 0.22 -57.57 16 23 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 27 C 0.13 5.48 6.13 86.67 0.53 6.01 16 28 N -0.26 -6.33 11.85 -52.31 -0.62 -6.95 16 29 H 0.07 0.42 8.14 -2.39 -0.02 0.41 16 30 H 0.13 -0.35 8.14 -2.39 -0.02 -0.37 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.13 -0.10 8.14 -2.39 -0.02 -0.12 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.13 -0.16 8.14 -2.39 -0.02 -0.17 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.42 7.63 8.22 -92.71 -0.76 6.87 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.72 7.58 -2.39 -0.02 1.71 16 41 H 0.08 1.75 8.00 -2.39 -0.02 1.73 16 42 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 2.31 8.05 -2.38 -0.02 2.29 16 44 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 45 H 0.07 4.02 5.87 -2.39 -0.01 4.01 16 46 H -0.02 -0.90 8.14 -2.38 -0.02 -0.92 16 47 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 48 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.03 1.11 7.73 -2.39 -0.02 1.10 16 Total: -1.00 -78.63 400.79 2.84 -75.79 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 0.18 Total: 8.79 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 6.79 Total: 14.21 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -6.10 Total: -128.73 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.07 Total: -19.05 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -78.63 2.84 -75.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317790643.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.722 kcal (2) G-P(sol) polarization free energy of solvation -78.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.792 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds