Wall clock time and date at job start Tue Mar 31 2020 20:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47291 * 2 1 4 4 C 1.53004 * 109.47247 * 240.00126 * 2 1 3 5 5 N 1.46501 * 109.47212 * 120.00017 * 2 1 3 6 6 N 1.28720 * 125.32207 * 240.03991 * 5 2 1 7 7 N 1.28984 * 108.98559 * 179.68457 * 6 5 2 8 8 C 1.34183 * 107.25380 * 0.44002 * 7 6 5 9 9 C 1.48003 * 126.69984 * 179.83970 * 8 7 6 10 10 O 1.21534 * 120.00349 * 179.68376 * 9 8 7 11 11 N 1.34782 * 119.99808 * 359.67547 * 9 8 7 12 12 C 1.46494 * 119.99883 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47153 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47357 * 179.97438 * 13 12 11 15 15 H 1.09008 * 110.88141 * 57.43250 * 14 13 12 16 16 C 1.55154 * 111.03901 * 181.33347 * 14 13 12 17 17 C 1.54325 * 102.94303 * 153.59308 * 16 14 13 18 18 N 1.47290 * 107.30599 * 337.81911 * 17 16 14 19 19 C 1.36938 * 125.79079 * 178.92205 * 18 17 16 20 20 H 1.08005 * 119.99558 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00146 * 0.02562 * 19 18 17 22 22 N 1.31620 * 120.00086 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99779 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47294 * 89.99594 * 23 21 19 25 25 H 1.48503 * 109.46797 * 209.99511 * 23 21 19 26 26 H 1.48500 * 109.47035 * 329.99310 * 23 21 19 27 27 C 1.47425 * 108.55742 * 358.92448 * 18 17 16 28 28 N 1.28869 * 125.31657 * 59.99730 * 5 2 1 29 29 H 1.08992 * 109.47139 * 300.00269 * 1 2 3 30 30 H 1.09007 * 109.46839 * 60.00061 * 1 2 3 31 31 H 1.08993 * 109.47381 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47135 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.46893 * 300.00092 * 3 2 1 34 34 H 1.08997 * 109.46796 * 59.99865 * 3 2 1 35 35 H 1.09000 * 109.46842 * 300.00398 * 4 2 1 36 36 H 1.09000 * 109.47202 * 59.99745 * 4 2 1 37 37 H 1.08999 * 109.47082 * 180.02562 * 4 2 1 38 38 H 0.97001 * 119.99978 * 0.02562 * 11 9 8 39 39 H 1.09003 * 109.47419 * 60.00332 * 12 11 9 40 40 H 1.09000 * 109.47726 * 300.00454 * 12 11 9 41 41 H 1.09005 * 109.46769 * 60.00435 * 13 12 11 42 42 H 1.08992 * 109.47516 * 300.00618 * 13 12 11 43 43 H 1.09002 * 110.72290 * 271.95994 * 16 14 13 44 44 H 1.08994 * 110.71922 * 35.05463 * 16 14 13 45 45 H 1.09004 * 109.88239 * 97.22707 * 17 16 14 46 46 H 1.08995 * 109.88239 * 218.23629 * 17 16 14 47 47 H 0.96999 * 120.00175 * 180.02562 * 22 21 19 48 48 H 1.09002 * 110.36696 * 265.26054 * 27 18 17 49 49 H 1.08995 * 110.36608 * 143.04891 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1962 6 7 2.7609 -0.1660 2.1074 7 7 2.9972 -1.0500 3.0165 8 6 2.3772 -2.1800 2.6436 9 6 2.3692 -3.4670 3.3743 10 8 1.7588 -4.4171 2.9251 11 7 3.0389 -3.5854 4.5379 12 6 3.0314 -4.8595 5.2610 13 6 3.8613 -4.7253 6.5394 14 6 3.8530 -6.0557 7.2949 15 1 4.2353 -6.8611 6.6676 16 6 4.6581 -5.9505 8.6170 17 6 4.0056 -7.0303 9.5058 18 7 2.6545 -7.2778 8.9742 19 6 1.7532 -8.1830 9.4675 20 1 0.7840 -8.2882 9.0025 21 6 2.0851 -8.9654 10.5650 22 7 3.2664 -8.8375 11.1313 23 14 0.8558 -10.2007 11.2374 24 1 1.0473 -11.5084 10.5603 25 1 1.0670 -10.3641 12.6983 26 1 -0.5240 -9.7116 10.9884 27 6 2.4339 -6.3870 7.8204 28 7 1.7710 -1.9181 1.5009 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7216 -1.2490 38 1 3.5259 -2.8270 4.8966 39 1 3.4603 -5.6380 4.6300 40 1 2.0062 -5.1249 5.5190 41 1 3.4327 -3.9468 7.1706 42 1 4.8864 -4.4602 6.2810 43 1 5.7108 -6.1757 8.4465 44 1 4.5437 -4.9614 9.0604 45 1 4.5930 -7.9477 9.4661 46 1 3.9423 -6.6752 10.5344 47 1 3.4985 -9.3845 11.8980 48 1 1.9241 -5.4767 8.1359 49 1 1.8545 -6.8984 7.0517 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317790644.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:11 Heat of formation + Delta-G solvation = 82.998985 kcal Electronic energy + Delta-G solvation = -28353.547595 eV Core-core repulsion = 24353.392902 eV Total energy + Delta-G solvation = -4000.154693 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -45.61808 -40.88468 -39.37478 -38.62368 -36.62576 -34.88868 -34.63005 -33.67867 -32.42892 -30.73504 -28.74668 -28.54228 -28.30951 -26.94705 -25.83421 -25.60549 -23.59810 -22.32142 -21.83648 -21.66861 -20.88187 -19.14251 -18.84500 -18.57741 -17.73405 -17.22631 -16.96858 -16.62027 -16.26041 -15.64785 -15.39352 -15.30822 -15.26353 -15.07598 -14.95185 -14.10539 -14.06479 -13.83373 -13.67206 -13.48458 -13.33177 -13.27754 -13.23108 -13.08328 -12.84963 -12.81059 -12.64997 -12.63904 -12.37473 -12.25073 -12.12433 -12.11919 -12.00249 -11.81287 -11.75660 -11.49268 -11.37679 -11.35304 -11.29004 -10.69491 -10.28135 -8.86444 -7.84014 -5.18671 -0.18087 0.23433 0.62448 1.44745 1.46998 1.55622 1.65264 1.85215 2.50262 2.77352 2.94164 3.33882 3.48014 3.56352 3.63737 3.67194 3.80753 3.98000 4.01004 4.17019 4.28268 4.34758 4.37923 4.41216 4.52166 4.58586 4.60140 4.63760 4.71708 4.72818 4.73033 4.77808 4.91086 5.00442 5.02055 5.10713 5.11207 5.16819 5.17882 5.22240 5.26869 5.27930 5.46620 5.56186 5.73255 5.81791 6.19525 6.22593 6.82402 7.02176 7.12474 7.80782 8.45597 9.26560 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.028200 B = 0.001725 C = 0.001666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.654190 B =16226.939676 C =16803.642906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 C -0.150 4.150 4 C -0.158 4.158 5 N -0.109 5.109 6 N -0.057 5.057 7 N -0.264 5.264 8 C 0.114 3.886 9 C 0.615 3.385 10 O -0.546 6.546 11 N -0.687 5.687 12 C 0.122 3.878 13 C -0.101 4.101 14 C -0.084 4.084 15 H 0.076 0.924 16 C -0.122 4.122 17 C 0.180 3.820 18 N -0.631 5.631 19 C -0.242 4.242 20 H 0.079 0.921 21 C -0.070 4.070 22 N -0.951 5.951 23 Si 0.978 3.022 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.270 1.270 27 C 0.131 3.869 28 N -0.260 5.260 29 H 0.061 0.939 30 H 0.129 0.871 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.128 0.872 37 H 0.063 0.937 38 H 0.422 0.578 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.008 0.992 46 H 0.003 0.997 47 H 0.246 0.754 48 H 0.024 0.976 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.143 25.218 -27.332 37.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.081 3.919 3 C -0.208 4.208 4 C -0.216 4.216 5 N -0.026 5.026 6 N -0.049 5.049 7 N -0.139 5.139 8 C -0.170 4.170 9 C 0.395 3.605 10 O -0.421 6.421 11 N -0.339 5.339 12 C -0.001 4.001 13 C -0.139 4.139 14 C -0.104 4.104 15 H 0.095 0.905 16 C -0.161 4.161 17 C 0.055 3.945 18 N -0.358 5.358 19 C -0.371 4.371 20 H 0.097 0.903 21 C -0.262 4.262 22 N -0.601 5.601 23 Si 0.806 3.194 24 H -0.213 1.213 25 H -0.219 1.219 26 H -0.195 1.195 27 C 0.006 3.994 28 N -0.114 5.114 29 H 0.080 0.920 30 H 0.147 0.853 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.147 0.853 37 H 0.082 0.918 38 H 0.260 0.740 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.026 0.974 46 H 0.021 0.979 47 H 0.055 0.945 48 H 0.042 0.958 49 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.186 24.992 -27.605 37.238 hybrid contribution -0.511 -1.362 1.253 1.920 sum -0.697 23.630 -26.352 35.402 Atomic orbital electron populations 1.22314 0.89472 1.04187 1.05697 1.22219 0.97329 0.94092 0.78258 1.22181 1.02905 0.89766 1.05911 1.22311 1.02161 1.01545 0.95576 1.51319 1.28236 1.04587 1.18453 1.78808 1.08783 1.21714 0.95586 1.76092 1.19983 0.97898 1.19895 1.25164 1.00804 0.97133 0.93899 1.16231 0.79880 0.83200 0.81205 1.90853 1.44314 1.38807 1.68117 1.45628 1.50944 1.16478 1.20856 1.21538 1.01402 0.84043 0.93069 1.21614 1.01554 0.96744 0.94006 1.22142 0.95018 0.97567 0.95661 0.90534 1.22758 0.99349 0.98893 0.95065 1.20988 0.84764 0.94602 0.94140 1.44896 1.14068 1.43140 1.33664 1.19471 0.95716 1.12244 1.09693 0.90291 1.25661 0.99134 1.02300 0.99140 1.70195 1.21622 1.43546 1.24719 0.85082 0.78533 0.78839 0.76921 1.21279 1.21925 1.19502 1.21855 0.96251 0.92627 0.88634 1.74969 1.20989 1.00229 1.15237 0.91955 0.85291 0.91901 0.91016 0.85530 0.91138 0.91886 0.85320 0.91816 0.73984 0.90843 0.91864 0.89966 0.88235 0.89890 0.90575 0.97419 0.97862 0.94474 0.95780 0.94639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 8.66 71.98 0.62 -0.39 16 2 C 0.16 1.38 1.30 3.61 0.00 1.38 16 3 C -0.15 -0.59 7.90 71.98 0.57 -0.02 16 4 C -0.16 -0.94 8.66 71.98 0.62 -0.32 16 5 N -0.11 -1.98 3.72 -152.24 -0.57 -2.55 16 6 N -0.06 -1.17 12.21 37.02 0.45 -0.71 16 7 N -0.26 -6.18 12.26 -52.37 -0.64 -6.82 16 8 C 0.11 2.91 8.14 137.15 1.12 4.02 16 9 C 0.61 16.95 7.84 86.83 0.68 17.63 16 10 O -0.55 -18.99 17.10 -3.82 -0.07 -19.06 16 11 N -0.69 -15.11 5.55 -465.82 -2.59 -17.69 16 12 C 0.12 2.89 5.52 86.38 0.48 3.37 16 13 C -0.10 -2.19 4.85 30.59 0.15 -2.04 16 14 C -0.08 -2.63 3.07 -9.40 -0.03 -2.66 16 15 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 16 C -0.12 -4.25 6.42 31.78 0.20 -4.05 16 17 C 0.18 9.06 5.38 86.68 0.47 9.53 16 18 N -0.63 -33.54 3.40 -691.30 -2.35 -35.89 16 19 C -0.24 -14.14 10.28 84.03 0.86 -13.28 16 20 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 21 C -0.07 -4.11 5.49 84.86 0.47 -3.65 16 22 N -0.95 -59.03 10.33 21.65 0.22 -58.80 16 23 Si 0.98 47.39 29.55 68.60 2.03 49.41 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.89 16 25 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 27 C 0.13 5.37 5.89 86.85 0.51 5.88 16 28 N -0.26 -6.29 11.85 -52.32 -0.62 -6.91 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.13 -0.12 8.14 -2.38 -0.02 -0.14 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.13 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H 0.07 0.40 8.14 -2.39 -0.02 0.39 16 35 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.13 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.42 7.27 8.22 -92.71 -0.76 6.51 16 39 H 0.07 1.79 8.14 -2.39 -0.02 1.78 16 40 H 0.06 1.73 7.45 -2.39 -0.02 1.72 16 41 H 0.08 1.69 8.10 -2.38 -0.02 1.67 16 42 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 45 H 0.01 0.43 7.39 -2.38 -0.02 0.41 16 46 H 0.00 0.18 7.51 -2.39 -0.02 0.16 16 47 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 48 H 0.02 0.97 8.00 -2.39 -0.02 0.95 16 49 H 0.04 1.45 8.06 -2.39 -0.02 1.43 16 Total: -1.00 -80.27 401.46 2.78 -77.49 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: 0.18 Total: 6.14 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 6.72 Total: 15.40 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -6.09 Total: -129.38 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.07 Total: -19.06 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -80.27 2.78 -77.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317790644.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.488 kcal (2) G-P(sol) polarization free energy of solvation -80.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds