Wall clock time and date at job start Tue Mar 31 2020 19:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 C 1.50701 * 109.46897 * 119.99565 * 2 1 3 5 5 N 1.31068 * 126.66174 * 299.96080 * 4 2 1 6 6 N 1.28844 * 107.99171 * 180.02562 * 5 4 2 7 7 N 1.28744 * 109.39618 * 359.73467 * 6 5 4 8 8 N 1.29022 * 108.80446 * 0.43492 * 7 6 5 9 9 C 1.46500 * 126.43268 * 179.83554 * 8 7 6 10 10 C 1.50703 * 109.47016 * 269.68851 * 9 8 7 11 11 O 1.21283 * 120.00001 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99861 * 180.02562 * 10 9 8 13 13 C 1.47019 * 125.65091 * 0.04445 * 12 10 9 14 14 C 1.54323 * 107.27538 * 181.02047 * 13 12 10 15 15 C 1.55161 * 102.94014 * 22.19677 * 14 13 12 16 16 H 1.08991 * 111.00921 * 82.57062 * 15 14 13 17 17 C 1.53004 * 111.00081 * 206.42470 * 15 14 13 18 18 N 1.46494 * 109.47147 * 287.18821 * 17 15 14 19 19 C 1.46505 * 119.99720 * 90.00055 * 18 17 15 20 20 C 1.36940 * 120.00186 * 270.00674 * 18 17 15 21 21 H 1.07991 * 120.00364 * 23.22245 * 20 18 17 22 22 C 1.38818 * 119.99518 * 203.22361 * 20 18 17 23 23 N 1.31614 * 120.00203 * 13.89381 * 22 20 18 24 24 Si 1.86805 * 119.99657 * 193.88940 * 22 20 18 25 25 H 1.48500 * 109.46873 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46848 * 120.00181 * 24 22 20 27 27 H 1.48499 * 109.46873 * 240.00164 * 24 22 20 28 28 C 1.47427 * 125.64764 * 180.02562 * 12 10 9 29 29 H 1.09004 * 109.47044 * 300.00597 * 1 2 3 30 30 H 1.09007 * 109.46849 * 60.00112 * 1 2 3 31 31 H 1.08995 * 109.47393 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47115 * 239.99752 * 2 1 3 33 33 H 1.09003 * 109.46667 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.46942 * 299.99374 * 3 2 1 35 35 H 1.08996 * 109.47365 * 59.99905 * 3 2 1 36 36 H 1.09003 * 109.46929 * 149.68888 * 9 8 7 37 37 H 1.09001 * 109.47436 * 29.68916 * 9 8 7 38 38 H 1.09000 * 109.88357 * 300.44015 * 13 12 10 39 39 H 1.09000 * 109.88394 * 61.45182 * 13 12 10 40 40 H 1.08997 * 110.72186 * 263.83028 * 14 13 12 41 41 H 1.09002 * 110.72314 * 140.55605 * 14 13 12 42 42 H 1.08995 * 109.47614 * 47.19756 * 17 15 14 43 43 H 1.09006 * 109.46817 * 167.19293 * 17 15 14 44 44 H 1.09001 * 109.46329 * 95.16708 * 19 18 17 45 45 H 1.08999 * 109.47170 * 215.16304 * 19 18 17 46 46 H 1.08994 * 109.47241 * 335.16802 * 19 18 17 47 47 H 0.97003 * 120.00167 * 179.97438 * 23 22 20 48 48 H 1.08994 * 110.36672 * 37.06859 * 28 12 10 49 49 H 1.09003 * 110.46199 * 274.79127 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7981 -0.3778 2.4765 6 7 2.3996 -1.2280 3.2351 7 7 3.0068 -2.0975 2.5053 8 7 2.8090 -1.8091 1.2634 9 6 3.3272 -2.5434 0.1064 10 6 4.6651 -1.9749 -0.2911 11 8 5.1392 -1.0481 0.3311 12 7 5.3346 -2.4965 -1.3380 13 6 4.8779 -3.6148 -2.1760 14 6 5.9766 -3.8783 -3.2272 15 6 7.2412 -3.2660 -2.5690 16 1 7.6915 -3.9643 -1.8636 17 6 8.2550 -2.8306 -3.6291 18 7 8.8830 -4.0149 -4.2198 19 6 8.2888 -4.6473 -5.4002 20 6 10.0254 -4.5310 -3.6685 21 1 10.2612 -4.3359 -2.6329 22 6 10.8805 -5.3049 -4.4412 23 7 10.7507 -5.3213 -5.7508 24 14 12.2155 -6.3229 -3.6220 25 1 12.1506 -6.1323 -2.1507 26 1 12.0114 -7.7580 -3.9442 27 1 13.5452 -5.8880 -4.1198 28 6 6.6462 -2.0400 -1.8327 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 2.6301 -2.4483 -0.7262 37 1 3.4421 -3.5958 0.3657 38 1 4.7322 -4.5032 -1.5615 39 1 3.9439 -3.3496 -2.6713 40 1 5.7446 -3.3702 -4.1632 41 1 6.1062 -4.9483 -3.3899 42 1 7.7455 -2.2629 -4.4076 43 1 9.0195 -2.2067 -3.1660 44 1 8.7731 -4.2659 -6.2991 45 1 8.4279 -5.7268 -5.3428 46 1 7.2236 -4.4196 -5.4369 47 1 11.3484 -5.8619 -6.2907 48 1 7.2862 -1.7505 -0.9993 49 1 6.5236 -1.2057 -2.5235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317853061.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:35 Heat of formation + Delta-G solvation = 105.245061 kcal Electronic energy + Delta-G solvation = -29516.651483 eV Core-core repulsion = 25517.461452 eV Total energy + Delta-G solvation = -3999.190031 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -44.41818 -40.39903 -38.06066 -36.53705 -35.63336 -35.50691 -32.64506 -31.72089 -30.75871 -29.71869 -29.02654 -27.65533 -26.13986 -25.59629 -24.70434 -23.84618 -23.02004 -21.40797 -21.06620 -20.01239 -19.84781 -18.20394 -17.78823 -16.74176 -16.67777 -16.36656 -16.13190 -15.45158 -15.08278 -14.99839 -14.67384 -13.97041 -13.76671 -13.70028 -13.63737 -13.35511 -13.20514 -13.03278 -12.77190 -12.63832 -12.42042 -12.28017 -12.14530 -12.07804 -11.79243 -11.62088 -11.59724 -11.49058 -11.22436 -11.20789 -11.00107 -10.83437 -10.55137 -10.50157 -10.34937 -10.16856 -10.13064 -9.93384 -9.92080 -8.94209 -8.62227 -6.82654 -5.80214 -3.27594 0.93430 1.51240 2.05212 2.07225 2.62383 3.32348 3.40760 3.42213 3.51509 3.76449 3.83218 4.04903 4.29971 4.41589 4.50405 4.56318 4.62536 4.74510 4.78962 4.89521 5.14479 5.16864 5.18449 5.24324 5.29472 5.37416 5.38379 5.43130 5.47854 5.50993 5.71978 5.73311 5.75500 5.79125 5.84408 5.85360 5.93160 6.07324 6.21919 6.31868 6.58663 6.63936 6.75438 7.12191 7.25825 7.63543 7.64223 7.74246 8.32058 8.41040 9.15986 9.79121 10.27214 11.24262 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.002216 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.892965 B =12635.077461 C =13161.815211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.202 3.798 5 N -0.300 5.300 6 N -0.073 5.073 7 N -0.085 5.085 8 N -0.295 5.295 9 C 0.097 3.903 10 C 0.513 3.487 11 O -0.524 6.524 12 N -0.606 5.606 13 C 0.090 3.910 14 C -0.117 4.117 15 C -0.118 4.118 16 H 0.086 0.914 17 C 0.163 3.837 18 N -0.599 5.599 19 C 0.161 3.839 20 C -0.257 4.257 21 H 0.068 0.932 22 C 0.003 3.997 23 N -0.906 5.906 24 Si 0.902 3.098 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.111 3.889 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.039 0.961 43 H 0.051 0.949 44 H 0.030 0.970 45 H 0.038 0.962 46 H 0.001 0.999 47 H 0.252 0.748 48 H 0.077 0.923 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.756 6.814 4.402 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.076 4.076 5 N -0.149 5.149 6 N -0.067 5.067 7 N -0.070 5.070 8 N -0.095 5.095 9 C -0.029 4.029 10 C 0.298 3.702 11 O -0.400 6.400 12 N -0.340 5.340 13 C -0.033 4.033 14 C -0.155 4.155 15 C -0.140 4.140 16 H 0.104 0.896 17 C 0.034 3.966 18 N -0.321 5.321 19 C 0.016 3.984 20 C -0.387 4.387 21 H 0.086 0.914 22 C -0.195 4.195 23 N -0.550 5.550 24 Si 0.732 3.268 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 C -0.011 4.011 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.155 0.845 37 H 0.160 0.840 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.019 0.981 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.312 7.062 6.096 23.265 hybrid contribution 0.931 -0.923 -0.658 1.467 sum -20.382 6.139 5.437 21.970 Atomic orbital electron populations 1.21855 0.91865 1.02700 1.03768 1.19798 0.97350 0.96630 0.89479 1.21831 1.02025 0.92958 1.03434 1.26086 0.94791 0.88700 0.98017 1.74943 1.20661 1.20971 0.98308 1.78609 1.06867 0.98826 1.22381 1.78911 1.19042 1.21865 0.87181 1.47879 1.33863 1.20895 1.06870 1.21976 0.96102 0.98677 0.86187 1.19821 0.86078 0.83914 0.80401 1.90826 1.68359 1.28459 1.52340 1.48512 1.21577 1.34532 1.29376 1.22328 0.98836 0.88759 0.93328 1.22641 0.93176 1.02869 0.96773 1.23273 0.96201 0.95439 0.99131 0.89609 1.20602 0.93474 0.89619 0.92895 1.43855 1.27143 1.28727 1.32361 1.20829 0.90806 0.97135 0.89602 1.19199 0.98009 1.27675 0.93783 0.91417 1.25019 0.97853 1.01538 0.95122 1.70072 1.39565 1.42251 1.03162 0.86226 0.81663 0.80068 0.78839 1.20299 1.21612 1.21695 1.22459 0.82127 0.98112 0.98440 0.90891 0.90702 0.92373 0.89224 0.91849 0.90827 0.91015 0.84456 0.83977 0.91141 0.91275 0.90593 0.89476 0.94225 0.93075 0.95179 0.94307 0.98060 0.93767 0.90434 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 9.18 37.16 0.34 -0.41 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -1.06 9.18 37.16 0.34 -0.72 16 4 C 0.20 2.22 6.64 -155.43 -1.03 1.19 16 5 N -0.30 -4.16 12.36 32.70 0.40 -3.75 16 6 N -0.07 -1.14 13.43 60.35 0.81 -0.33 16 7 N -0.08 -1.22 13.29 60.35 0.80 -0.42 16 8 N -0.29 -3.34 2.83 -59.44 -0.17 -3.51 16 9 C 0.10 0.73 5.76 -5.19 -0.03 0.70 16 10 C 0.51 5.85 7.92 -10.99 -0.09 5.77 16 11 O -0.52 -8.44 16.69 5.55 0.09 -8.35 16 12 N -0.61 -6.44 3.33 -170.53 -0.57 -7.00 16 13 C 0.09 0.72 6.49 -3.07 -0.02 0.70 16 14 C -0.12 -1.31 5.09 -24.89 -0.13 -1.44 16 15 C -0.12 -1.68 3.26 -88.47 -0.29 -1.97 16 16 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 17 C 0.16 2.88 5.15 -4.04 -0.02 2.86 16 18 N -0.60 -13.61 2.89 -181.12 -0.52 -14.13 16 19 C 0.16 3.56 8.75 59.85 0.52 4.09 16 20 C -0.26 -6.65 9.65 -15.06 -0.15 -6.79 16 21 H 0.07 1.73 7.87 -52.49 -0.41 1.32 16 22 C 0.00 0.09 5.08 -17.43 -0.09 0.00 16 23 N -0.91 -25.41 10.77 55.49 0.60 -24.81 16 24 Si 0.90 21.17 29.58 -169.99 -5.03 16.15 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 28 C 0.11 1.39 6.38 -2.53 -0.02 1.38 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.25 8.14 -51.92 -0.42 -0.17 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.45 6.85 -51.93 -0.36 0.09 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.14 0.46 7.13 -51.93 -0.37 0.09 16 37 H 0.14 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.83 7.54 -51.93 -0.39 0.44 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.04 0.65 7.90 -51.93 -0.41 0.24 16 43 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 44 H 0.03 0.74 7.33 -51.93 -0.38 0.36 16 45 H 0.04 0.94 7.38 -51.93 -0.38 0.55 16 46 H 0.00 0.02 6.54 -51.93 -0.34 -0.32 16 47 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 49 H 0.07 0.85 8.03 -51.93 -0.42 0.43 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -34.54 398.77 -6.60 -41.14 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -8.08 Total: -5.98 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.95 Total: 4.98 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 1.36 Total: -53.95 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.54 -6.60 -41.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317853061.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.386 kcal (2) G-P(sol) polarization free energy of solvation -34.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds