Wall clock time and date at job start Tue Mar 31 2020 19:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47048 * 2 1 4 4 C 1.50701 * 109.46897 * 119.99565 * 2 1 3 5 5 N 1.31068 * 126.66174 * 299.96080 * 4 2 1 6 6 N 1.28844 * 107.99171 * 180.02562 * 5 4 2 7 7 N 1.28744 * 109.39618 * 359.73467 * 6 5 4 8 8 N 1.29022 * 108.80446 * 0.43492 * 7 6 5 9 9 C 1.46500 * 126.43268 * 179.83554 * 8 7 6 10 10 C 1.50703 * 109.47016 * 269.68851 * 9 8 7 11 11 O 1.21283 * 120.00001 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99861 * 180.02562 * 10 9 8 13 13 C 1.47019 * 125.65091 * 0.04445 * 12 10 9 14 14 C 1.54323 * 107.27538 * 181.02047 * 13 12 10 15 15 C 1.55161 * 102.94014 * 22.19677 * 14 13 12 16 16 H 1.08991 * 111.00921 * 82.57062 * 15 14 13 17 17 C 1.53004 * 111.00081 * 206.42470 * 15 14 13 18 18 N 1.46494 * 109.47147 * 287.18821 * 17 15 14 19 19 C 1.46505 * 119.99720 * 90.00055 * 18 17 15 20 20 C 1.36940 * 120.00186 * 270.00674 * 18 17 15 21 21 H 1.07991 * 120.00364 * 23.22245 * 20 18 17 22 22 C 1.38818 * 119.99518 * 203.22361 * 20 18 17 23 23 N 1.31614 * 120.00203 * 13.89381 * 22 20 18 24 24 Si 1.86805 * 119.99657 * 193.88940 * 22 20 18 25 25 H 1.48500 * 109.46873 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46848 * 120.00181 * 24 22 20 27 27 H 1.48499 * 109.46873 * 240.00164 * 24 22 20 28 28 C 1.47427 * 125.64764 * 180.02562 * 12 10 9 29 29 H 1.09004 * 109.47044 * 300.00597 * 1 2 3 30 30 H 1.09007 * 109.46849 * 60.00112 * 1 2 3 31 31 H 1.08995 * 109.47393 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47115 * 239.99752 * 2 1 3 33 33 H 1.09003 * 109.46667 * 179.97438 * 3 2 1 34 34 H 1.08992 * 109.46942 * 299.99374 * 3 2 1 35 35 H 1.08996 * 109.47365 * 59.99905 * 3 2 1 36 36 H 1.09003 * 109.46929 * 149.68888 * 9 8 7 37 37 H 1.09001 * 109.47436 * 29.68916 * 9 8 7 38 38 H 1.09000 * 109.88357 * 300.44015 * 13 12 10 39 39 H 1.09000 * 109.88394 * 61.45182 * 13 12 10 40 40 H 1.08997 * 110.72186 * 263.83028 * 14 13 12 41 41 H 1.09002 * 110.72314 * 140.55605 * 14 13 12 42 42 H 1.08995 * 109.47614 * 47.19756 * 17 15 14 43 43 H 1.09006 * 109.46817 * 167.19293 * 17 15 14 44 44 H 1.09001 * 109.46329 * 95.16708 * 19 18 17 45 45 H 1.08999 * 109.47170 * 215.16304 * 19 18 17 46 46 H 1.08994 * 109.47241 * 335.16802 * 19 18 17 47 47 H 0.97003 * 120.00167 * 179.97438 * 23 22 20 48 48 H 1.08994 * 110.36672 * 37.06859 * 28 12 10 49 49 H 1.09003 * 110.46199 * 274.79127 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7981 -0.3778 2.4765 6 7 2.3996 -1.2280 3.2351 7 7 3.0068 -2.0975 2.5053 8 7 2.8090 -1.8091 1.2634 9 6 3.3272 -2.5434 0.1064 10 6 4.6651 -1.9749 -0.2911 11 8 5.1392 -1.0481 0.3311 12 7 5.3346 -2.4965 -1.3380 13 6 4.8779 -3.6148 -2.1760 14 6 5.9766 -3.8783 -3.2272 15 6 7.2412 -3.2660 -2.5690 16 1 7.6915 -3.9643 -1.8636 17 6 8.2550 -2.8306 -3.6291 18 7 8.8830 -4.0149 -4.2198 19 6 8.2888 -4.6473 -5.4002 20 6 10.0254 -4.5310 -3.6685 21 1 10.2612 -4.3359 -2.6329 22 6 10.8805 -5.3049 -4.4412 23 7 10.7507 -5.3213 -5.7508 24 14 12.2155 -6.3229 -3.6220 25 1 12.1506 -6.1323 -2.1507 26 1 12.0114 -7.7580 -3.9442 27 1 13.5452 -5.8880 -4.1198 28 6 6.6462 -2.0400 -1.8327 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6768 1.9562 -0.8900 35 1 1.6767 1.9564 0.8899 36 1 2.6301 -2.4483 -0.7262 37 1 3.4421 -3.5958 0.3657 38 1 4.7322 -4.5032 -1.5615 39 1 3.9439 -3.3496 -2.6713 40 1 5.7446 -3.3702 -4.1632 41 1 6.1062 -4.9483 -3.3899 42 1 7.7455 -2.2629 -4.4076 43 1 9.0195 -2.2067 -3.1660 44 1 8.7731 -4.2659 -6.2991 45 1 8.4279 -5.7268 -5.3428 46 1 7.2236 -4.4196 -5.4369 47 1 11.3484 -5.8619 -6.2907 48 1 7.2862 -1.7505 -0.9993 49 1 6.5236 -1.2057 -2.5235 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317853061.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:34 Heat of formation + Delta-G solvation = 82.035335 kcal Electronic energy + Delta-G solvation = -29517.657932 eV Core-core repulsion = 25517.461452 eV Total energy + Delta-G solvation = -4000.196480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.32335 -41.30998 -39.13200 -37.21455 -37.09618 -36.45460 -34.07103 -32.65681 -32.23782 -30.55484 -30.03914 -28.11533 -27.90643 -27.07683 -25.50357 -24.90462 -23.89277 -22.92779 -21.78559 -21.23386 -20.69297 -19.02621 -18.70549 -18.48732 -17.59994 -17.35708 -16.95797 -16.72440 -16.19446 -15.88461 -15.56128 -15.45325 -15.09427 -14.62261 -14.50246 -14.32509 -14.20389 -14.00838 -13.77114 -13.69583 -13.48697 -13.20845 -13.09602 -12.91875 -12.81154 -12.71105 -12.58368 -12.54162 -12.48936 -12.30951 -12.29394 -12.17347 -11.95717 -11.90661 -11.74327 -11.57923 -11.36018 -11.27533 -11.01093 -10.62321 -9.80008 -8.72810 -7.81576 -5.29666 0.05774 0.79423 1.10838 1.24703 1.44009 1.47165 1.55753 1.80504 2.50731 2.85879 3.09650 3.11742 3.30748 3.54890 3.57895 3.71175 3.83193 3.93169 4.01038 4.04462 4.14437 4.17408 4.35374 4.36253 4.46176 4.60416 4.62378 4.64123 4.77444 4.82117 4.84119 4.87241 4.90284 4.91608 4.95560 5.02052 5.11808 5.13873 5.21540 5.27796 5.33806 5.36286 5.39236 5.53227 5.66496 5.79658 6.29919 6.35795 6.79589 7.18743 7.45788 7.92293 8.32860 9.20273 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.023330 B = 0.002216 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.892965 B =12635.077461 C =13161.815211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.142 4.142 4 C 0.210 3.790 5 N -0.329 5.329 6 N -0.107 5.107 7 N -0.106 5.106 8 N -0.293 5.293 9 C 0.094 3.906 10 C 0.512 3.488 11 O -0.581 6.581 12 N -0.602 5.602 13 C 0.093 3.907 14 C -0.114 4.114 15 C -0.110 4.110 16 H 0.058 0.942 17 C 0.161 3.839 18 N -0.614 5.614 19 C 0.176 3.824 20 C -0.256 4.256 21 H 0.064 0.936 22 C -0.051 4.051 23 N -0.936 5.936 24 Si 0.959 3.041 25 H -0.271 1.271 26 H -0.290 1.290 27 H -0.295 1.295 28 C 0.118 3.882 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.193 0.807 37 H 0.170 0.830 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.034 0.966 44 H -0.002 1.002 45 H 0.010 0.990 46 H 0.047 0.953 47 H 0.247 0.753 48 H 0.052 0.948 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.719 6.463 3.214 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.201 4.201 4 C -0.068 4.068 5 N -0.178 5.178 6 N -0.100 5.100 7 N -0.092 5.092 8 N -0.094 5.094 9 C -0.029 4.029 10 C 0.299 3.701 11 O -0.461 6.461 12 N -0.334 5.334 13 C -0.028 4.028 14 C -0.152 4.152 15 C -0.132 4.132 16 H 0.076 0.924 17 C 0.034 3.966 18 N -0.337 5.337 19 C 0.031 3.969 20 C -0.387 4.387 21 H 0.082 0.918 22 C -0.247 4.247 23 N -0.583 5.583 24 Si 0.788 3.212 25 H -0.196 1.196 26 H -0.217 1.217 27 H -0.222 1.222 28 C -0.005 4.005 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.085 0.915 32 H 0.140 0.860 33 H 0.056 0.944 34 H 0.121 0.879 35 H 0.075 0.925 36 H 0.210 0.790 37 H 0.187 0.813 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.053 0.947 44 H 0.016 0.984 45 H 0.029 0.971 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -24.307 6.701 4.915 25.689 hybrid contribution 1.863 -0.727 -0.325 2.026 sum -22.444 5.974 4.590 23.675 Atomic orbital electron populations 1.21855 0.90219 1.03422 1.04225 1.20141 0.98555 0.95941 0.88635 1.21825 1.00308 0.93721 1.04212 1.26841 0.93483 0.88124 0.98358 1.74856 1.21628 1.21483 0.99790 1.78564 1.08060 0.99759 1.23645 1.78801 1.19453 1.22294 0.88680 1.48122 1.33404 1.21121 1.06735 1.22467 0.94793 0.99115 0.86568 1.20417 0.87072 0.83061 0.79507 1.90819 1.70008 1.31163 1.54086 1.48492 1.20526 1.34923 1.29504 1.22535 0.99147 0.88636 0.92500 1.22608 0.92387 1.02097 0.98132 1.22864 0.96707 0.95833 0.97772 0.92371 1.20749 0.93812 0.88017 0.94014 1.44070 1.26814 1.30269 1.32576 1.20586 0.93017 0.95158 0.88117 1.19445 0.98667 1.26892 0.93656 0.91840 1.25676 1.00146 1.03177 0.95662 1.70216 1.40589 1.43343 1.04141 0.85322 0.79108 0.78481 0.78245 1.19564 1.21704 1.22212 1.22190 0.83149 0.97540 0.97617 0.92632 0.88071 0.91527 0.86004 0.94412 0.87897 0.92453 0.78963 0.81293 0.89122 0.86493 0.89514 0.90395 0.92239 0.94744 0.98354 0.97095 0.93447 0.94353 0.92931 0.89910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.18 71.98 0.66 -0.30 16 2 C -0.01 -0.12 3.26 -11.54 -0.04 -0.16 16 3 C -0.14 -1.83 9.18 71.98 0.66 -1.17 16 4 C 0.21 4.24 6.64 138.14 0.92 5.16 16 5 N -0.33 -9.09 12.36 -50.45 -0.62 -9.72 16 6 N -0.11 -3.36 13.43 37.01 0.50 -2.87 16 7 N -0.11 -3.01 13.29 37.02 0.49 -2.51 16 8 N -0.29 -5.99 2.83 -341.97 -0.97 -6.96 16 9 C 0.09 1.01 5.76 85.63 0.49 1.51 16 10 C 0.51 10.21 7.92 87.66 0.69 10.91 16 11 O -0.58 -18.32 16.69 -3.04 -0.05 -18.37 16 12 N -0.60 -10.69 3.33 -811.83 -2.70 -13.39 16 13 C 0.09 0.99 6.49 86.73 0.56 1.55 16 14 C -0.11 -2.14 5.09 31.78 0.16 -1.98 16 15 C -0.11 -2.96 3.26 -9.40 -0.03 -2.99 16 16 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 17 C 0.16 5.57 5.15 86.38 0.44 6.02 16 18 N -0.61 -27.87 2.89 -726.94 -2.10 -29.97 16 19 C 0.18 7.72 8.75 127.77 1.12 8.84 16 20 C -0.26 -13.39 9.65 84.03 0.81 -12.58 16 21 H 0.06 3.30 7.87 -2.92 -0.02 3.28 16 22 C -0.05 -2.79 5.08 84.86 0.43 -2.36 16 23 N -0.94 -53.62 10.77 21.65 0.23 -53.39 16 24 Si 0.96 44.21 29.58 68.60 2.03 46.24 16 25 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 27 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 28 C 0.12 2.79 6.38 86.85 0.55 3.34 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 31 H 0.07 0.37 8.14 -2.39 -0.02 0.36 16 32 H 0.12 0.53 6.85 -2.39 -0.02 0.51 16 33 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.19 -0.11 7.13 -2.39 -0.02 -0.12 16 37 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.09 1.47 7.54 -2.39 -0.02 1.45 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.64 16 42 H 0.06 1.83 7.90 -2.39 -0.02 1.81 16 43 H 0.03 1.28 8.04 -2.38 -0.02 1.26 16 44 H 0.00 -0.09 7.33 -2.39 -0.02 -0.11 16 45 H 0.01 0.51 7.38 -2.39 -0.02 0.49 16 46 H 0.05 1.60 6.54 -2.39 -0.02 1.58 16 47 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 48 H 0.05 1.50 8.04 -2.39 -0.02 1.49 16 49 H 0.08 1.79 8.03 -2.39 -0.02 1.77 16 Total: -1.00 -82.04 398.77 5.18 -76.85 By element: Atomic # 1 Polarization: -2.62 SS G_CDS: 0.93 Total: -1.69 kcal Atomic # 6 Polarization: 8.34 SS G_CDS: 7.44 Total: 15.78 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -5.17 Total: -118.81 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.37 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -82.04 5.18 -76.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317853061.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.890 kcal (2) G-P(sol) polarization free energy of solvation -82.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds