Wall clock time and date at job start Tue Mar 31 2020 19:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46743 * 2 1 4 4 C 1.52994 * 109.47309 * 120.00509 * 2 1 3 5 5 H 1.09004 * 109.47017 * 299.99986 * 4 2 1 6 6 C 1.52999 * 109.47081 * 180.02562 * 4 2 1 7 7 N 1.46497 * 109.47148 * 185.00018 * 6 4 2 8 8 C 1.34780 * 120.00155 * 179.97438 * 7 6 4 9 9 O 1.21278 * 119.99734 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00025 * 180.02562 * 8 7 6 11 11 H 1.08994 * 107.91043 * 63.39130 * 10 8 7 12 12 C 1.51015 * 108.02316 * 306.79728 * 10 8 7 13 13 C 1.54224 * 110.78811 * 166.06304 * 12 10 8 14 14 C 1.51810 * 106.67133 * 79.18539 * 13 12 10 15 15 N 1.30314 * 127.92171 * 114.44267 * 14 13 12 16 16 N 1.29269 * 107.46443 * 179.74718 * 15 14 13 17 17 N 1.29147 * 109.43045 * 359.97438 * 16 15 14 18 18 N 1.28393 * 108.35895 * 359.97438 * 17 16 15 19 19 C 1.47662 * 127.74320 * 180.02562 * 18 17 16 20 20 C 1.50876 * 108.05406 * 180.02562 * 10 8 7 21 21 N 1.46496 * 109.47356 * 59.99601 * 4 2 1 22 22 C 1.36934 * 120.00455 * 275.00551 * 21 4 2 23 23 H 1.08000 * 119.99641 * 359.97438 * 22 21 4 24 24 C 1.38815 * 120.00221 * 180.02562 * 22 21 4 25 25 N 1.31628 * 119.99760 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00099 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47109 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47115 * 119.99768 * 26 24 22 29 29 H 1.48501 * 109.46933 * 239.99666 * 26 24 22 30 30 H 1.08999 * 109.46637 * 299.99564 * 1 2 3 31 31 H 1.08994 * 109.47392 * 59.99478 * 1 2 3 32 32 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46637 * 240.00435 * 2 1 3 34 34 H 1.09001 * 109.46590 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47603 * 300.00392 * 3 2 1 36 36 H 1.09004 * 109.46960 * 60.00395 * 3 2 1 37 37 H 1.08994 * 109.47732 * 64.99450 * 6 4 2 38 38 H 1.09003 * 109.47056 * 304.99399 * 6 4 2 39 39 H 0.97000 * 120.00342 * 359.97438 * 7 6 4 40 40 H 1.08998 * 109.19586 * 286.50012 * 12 10 8 41 41 H 1.08995 * 109.19682 * 45.78903 * 12 10 8 42 42 H 1.08999 * 110.08306 * 319.92196 * 13 12 10 43 43 H 1.09001 * 110.10974 * 198.46221 * 13 12 10 44 44 H 1.08995 * 109.91627 * 5.21784 * 19 18 17 45 45 H 1.08997 * 109.91458 * 126.39747 * 19 18 17 46 46 H 1.09001 * 109.13285 * 73.77865 * 20 10 8 47 47 H 1.09008 * 109.12826 * 314.67693 * 20 10 8 48 48 H 0.97009 * 119.99376 * 94.99710 * 21 4 2 49 49 H 0.96997 * 119.99308 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 3.5701 -0.7207 1.2494 7 7 4.0585 -1.5130 2.3807 8 6 5.3837 -1.6543 2.5823 9 8 6.1717 -1.1258 1.8270 10 6 5.8861 -2.4698 3.7458 11 1 5.5600 -3.4994 3.5991 12 6 5.2308 -1.9457 5.0014 13 6 5.4193 -2.9337 6.1705 14 6 6.8277 -2.7224 6.6964 15 7 7.1869 -2.2675 7.8635 16 7 8.4792 -2.2550 7.8940 17 7 8.9397 -2.6934 6.7699 18 7 7.9455 -2.9896 6.0135 19 6 7.9844 -3.5268 4.6386 20 6 7.3944 -2.4477 3.7156 21 7 1.5518 -2.1025 1.2491 22 6 0.3102 -2.3898 1.7502 23 1 -0.3088 -1.5982 2.1459 24 6 -0.1522 -3.6987 1.7507 25 7 0.6025 -4.6635 1.2689 26 14 -1.8456 -4.0907 2.4350 27 1 -2.4882 -2.8400 2.9124 28 1 -2.6807 -4.7014 1.3697 29 1 -1.7137 -5.0424 3.5672 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 3.9331 0.3031 1.3392 38 1 3.9338 -1.1548 0.3180 39 1 3.4283 -1.9360 2.9847 40 1 5.6766 -0.9865 5.2647 41 1 4.1653 -1.8068 4.8184 42 1 5.3040 -3.9583 5.8170 43 1 4.6936 -2.7265 6.9569 44 1 9.0143 -3.7384 4.3516 45 1 7.3867 -4.4363 4.5783 46 1 7.7439 -1.4678 4.0407 47 1 7.7339 -2.6265 2.6953 48 1 2.1080 -2.8135 0.8939 49 1 0.2791 -5.5780 1.2689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319942383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:27 Heat of formation + Delta-G solvation = 75.655668 kcal Electronic energy + Delta-G solvation = -30030.545662 eV Core-core repulsion = 26030.072538 eV Total energy + Delta-G solvation = -4000.473123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.48427 -40.23976 -37.80423 -37.03068 -35.18633 -34.04582 -33.22634 -32.80451 -31.57003 -30.48161 -28.55846 -27.26321 -26.16292 -25.24690 -23.96157 -23.75086 -22.43879 -21.50555 -21.30123 -20.06978 -19.32857 -18.07142 -17.61782 -17.18526 -16.77673 -16.06257 -15.68587 -15.37036 -15.03574 -14.59392 -14.41943 -14.09680 -13.93182 -13.79333 -13.54830 -13.33095 -13.27735 -12.84180 -12.79947 -12.38886 -12.24383 -12.16608 -12.11408 -12.01718 -11.70842 -11.51096 -11.25635 -11.19400 -11.12698 -11.05205 -10.99450 -10.91806 -10.73047 -10.38128 -10.20626 -10.17197 -10.05479 -9.67520 -9.62049 -9.03095 -8.78093 -7.14506 -5.93425 -3.22691 1.12698 1.78351 2.08848 2.69219 3.24236 3.31369 3.38885 3.40499 3.63913 3.93341 4.12012 4.22175 4.39117 4.44275 4.63557 4.65413 4.70298 4.91280 5.03694 5.13492 5.20740 5.23844 5.29793 5.41011 5.42597 5.46503 5.52476 5.55226 5.57755 5.65937 5.73287 5.77382 5.80022 5.90073 6.02060 6.09138 6.14965 6.29143 6.35188 6.44227 6.53242 6.56932 6.78847 6.97567 7.20834 7.57259 7.73115 8.23869 8.35224 8.46253 9.36501 9.90122 10.26203 11.28247 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.003079 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.031985 B = 9090.439573 C =10508.394411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.149 4.149 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.112 3.888 7 N -0.708 5.708 8 C 0.512 3.488 9 O -0.552 6.552 10 C -0.115 4.115 11 H 0.106 0.894 12 C -0.115 4.115 13 C -0.036 4.036 14 C 0.184 3.816 15 N -0.303 5.303 16 N -0.087 5.087 17 N -0.096 5.096 18 N -0.302 5.302 19 C 0.114 3.886 20 C -0.119 4.119 21 N -0.721 5.721 22 C -0.237 4.237 23 H 0.074 0.926 24 C -0.009 4.009 25 N -0.929 5.929 26 Si 0.901 3.099 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.041 0.959 31 H 0.031 0.969 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.046 0.954 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.411 0.589 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.121 0.879 45 H 0.114 0.886 46 H 0.080 0.920 47 H 0.113 0.887 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.729 3.359 3.675 10.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.131 4.131 3 C -0.207 4.207 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.012 4.012 7 N -0.360 5.360 8 C 0.298 3.702 9 O -0.431 6.431 10 C -0.136 4.136 11 H 0.124 0.876 12 C -0.154 4.154 13 C -0.076 4.076 14 C -0.095 4.095 15 N -0.152 5.152 16 N -0.081 5.081 17 N -0.082 5.082 18 N -0.105 5.105 19 C -0.006 4.006 20 C -0.158 4.158 21 N -0.363 5.363 22 C -0.368 4.368 23 H 0.091 0.909 24 C -0.206 4.206 25 N -0.577 5.577 26 Si 0.732 3.268 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.105 0.895 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.248 0.752 40 H 0.094 0.906 41 H 0.116 0.884 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.139 0.861 45 H 0.132 0.868 46 H 0.099 0.901 47 H 0.131 0.869 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.074 4.105 4.200 12.535 hybrid contribution -1.650 -1.039 -0.407 1.992 sum 9.424 3.066 3.792 10.611 Atomic orbital electron populations 1.21821 0.94891 1.03904 0.99059 1.21729 0.96959 0.94404 1.00016 1.21946 1.00436 0.97352 1.00999 1.20544 0.89236 0.88213 0.96064 0.92839 1.21766 0.95773 0.94839 0.88809 1.46025 1.06578 1.52477 1.30884 1.20363 0.82794 0.81129 0.85946 1.90682 1.55499 1.49069 1.47877 1.20741 0.96018 1.02213 0.94664 0.87584 1.21516 1.02873 0.98995 0.91987 1.20866 0.86358 1.01510 0.98905 1.26077 0.93877 0.99986 0.89511 1.74967 1.05162 1.18627 1.16412 1.78855 1.02051 1.15165 1.12004 1.78835 1.14744 1.15516 0.99073 1.48682 1.04295 1.41941 1.15589 1.22950 1.06033 0.97997 0.73626 1.21565 0.93841 0.98973 1.01374 1.42467 1.18130 1.01811 1.73861 1.19237 0.92826 0.92369 1.32357 0.90854 1.24713 0.98257 0.95878 1.01713 1.69667 1.36795 0.99875 1.51362 0.86215 0.84293 0.77984 0.78274 1.20522 1.21931 1.21896 0.94036 0.94971 0.89499 0.91918 0.93092 0.93532 0.93170 0.91557 0.91843 0.75207 0.90620 0.88431 0.87891 0.86545 0.86079 0.86751 0.90116 0.86904 0.78143 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.26 37.16 0.31 -2.03 16 2 C -0.11 -1.71 2.69 -90.62 -0.24 -1.95 16 3 C -0.15 -1.94 8.84 37.16 0.33 -1.61 16 4 C 0.17 2.78 2.18 -67.94 -0.15 2.64 16 5 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 6 C 0.11 1.66 4.73 -4.04 -0.02 1.64 16 7 N -0.71 -9.53 5.12 -60.30 -0.31 -9.84 16 8 C 0.51 6.59 7.12 -10.98 -0.08 6.51 16 9 O -0.55 -8.91 15.54 5.56 0.09 -8.83 16 10 C -0.12 -1.00 1.98 -93.84 -0.19 -1.19 16 11 H 0.11 0.76 7.69 -51.93 -0.40 0.36 16 12 C -0.11 -0.93 4.90 -27.09 -0.13 -1.06 16 13 C -0.04 -0.27 6.03 -26.70 -0.16 -0.43 16 14 C 0.18 1.97 7.09 -156.72 -1.11 0.86 16 15 N -0.30 -4.21 12.37 32.63 0.40 -3.81 16 16 N -0.09 -1.31 13.45 60.32 0.81 -0.49 16 17 N -0.10 -1.26 13.36 60.35 0.81 -0.45 16 18 N -0.30 -3.07 3.36 -57.16 -0.19 -3.27 16 19 C 0.11 0.72 6.74 -3.01 -0.02 0.70 16 20 C -0.12 -0.96 4.48 -27.40 -0.12 -1.08 16 21 N -0.72 -14.73 4.44 -53.43 -0.24 -14.97 16 22 C -0.24 -5.51 7.57 -15.06 -0.11 -5.62 16 23 H 0.07 1.69 7.40 -52.49 -0.39 1.31 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -24.80 13.06 55.49 0.72 -24.08 16 26 Si 0.90 20.21 29.55 -169.99 -5.02 15.19 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 30 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 1.74 6.01 -51.93 -0.31 1.43 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.05 0.63 6.55 -51.93 -0.34 0.29 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.94 6.71 -51.93 -0.35 0.59 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.41 5.48 6.92 -40.82 -0.28 5.19 16 40 H 0.08 0.71 7.92 -51.93 -0.41 0.30 16 41 H 0.10 0.77 6.60 -51.93 -0.34 0.43 16 42 H 0.10 0.56 7.90 -51.93 -0.41 0.15 16 43 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.11 0.45 7.88 -51.93 -0.41 0.04 16 46 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 47 H 0.11 0.94 7.41 -51.92 -0.38 0.55 16 48 H 0.38 8.66 7.80 -40.82 -0.32 8.34 16 49 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 386.07 15.07 5.82 5.82 Total: -1.00 -30.78 386.07 -6.61 -37.40 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.70 Total: 10.28 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.80 Total: -2.95 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 2.01 Total: -56.91 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.78 -6.61 -37.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319942383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.051 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds