Wall clock time and date at job start Tue Mar 31 2020 19:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.46743 * 2 1 4 4 C 1.52994 * 109.47309 * 120.00509 * 2 1 3 5 5 H 1.09004 * 109.47017 * 299.99986 * 4 2 1 6 6 C 1.52999 * 109.47081 * 180.02562 * 4 2 1 7 7 N 1.46497 * 109.47148 * 185.00018 * 6 4 2 8 8 C 1.34780 * 120.00155 * 179.97438 * 7 6 4 9 9 O 1.21278 * 119.99734 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00025 * 180.02562 * 8 7 6 11 11 H 1.08994 * 107.91043 * 63.39130 * 10 8 7 12 12 C 1.51015 * 108.02316 * 306.79728 * 10 8 7 13 13 C 1.54224 * 110.78811 * 166.06304 * 12 10 8 14 14 C 1.51810 * 106.67133 * 79.18539 * 13 12 10 15 15 N 1.30314 * 127.92171 * 114.44267 * 14 13 12 16 16 N 1.29269 * 107.46443 * 179.74718 * 15 14 13 17 17 N 1.29147 * 109.43045 * 359.97438 * 16 15 14 18 18 N 1.28393 * 108.35895 * 359.97438 * 17 16 15 19 19 C 1.47662 * 127.74320 * 180.02562 * 18 17 16 20 20 C 1.50876 * 108.05406 * 180.02562 * 10 8 7 21 21 N 1.46496 * 109.47356 * 59.99601 * 4 2 1 22 22 C 1.36934 * 120.00455 * 275.00551 * 21 4 2 23 23 H 1.08000 * 119.99641 * 359.97438 * 22 21 4 24 24 C 1.38815 * 120.00221 * 180.02562 * 22 21 4 25 25 N 1.31628 * 119.99760 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00099 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47109 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47115 * 119.99768 * 26 24 22 29 29 H 1.48501 * 109.46933 * 239.99666 * 26 24 22 30 30 H 1.08999 * 109.46637 * 299.99564 * 1 2 3 31 31 H 1.08994 * 109.47392 * 59.99478 * 1 2 3 32 32 H 1.09001 * 109.46812 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46637 * 240.00435 * 2 1 3 34 34 H 1.09001 * 109.46590 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47603 * 300.00392 * 3 2 1 36 36 H 1.09004 * 109.46960 * 60.00395 * 3 2 1 37 37 H 1.08994 * 109.47732 * 64.99450 * 6 4 2 38 38 H 1.09003 * 109.47056 * 304.99399 * 6 4 2 39 39 H 0.97000 * 120.00342 * 359.97438 * 7 6 4 40 40 H 1.08998 * 109.19586 * 286.50012 * 12 10 8 41 41 H 1.08995 * 109.19682 * 45.78903 * 12 10 8 42 42 H 1.08999 * 110.08306 * 319.92196 * 13 12 10 43 43 H 1.09001 * 110.10974 * 198.46221 * 13 12 10 44 44 H 1.08995 * 109.91627 * 5.21784 * 19 18 17 45 45 H 1.08997 * 109.91458 * 126.39747 * 19 18 17 46 46 H 1.09001 * 109.13285 * 73.77865 * 20 10 8 47 47 H 1.09008 * 109.12826 * 314.67693 * 20 10 8 48 48 H 0.97009 * 119.99376 * 94.99710 * 21 4 2 49 49 H 0.96997 * 119.99308 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 1 1.6768 -0.2075 2.1392 6 6 3.5701 -0.7207 1.2494 7 7 4.0585 -1.5130 2.3807 8 6 5.3837 -1.6543 2.5823 9 8 6.1717 -1.1258 1.8270 10 6 5.8861 -2.4698 3.7458 11 1 5.5600 -3.4994 3.5991 12 6 5.2308 -1.9457 5.0014 13 6 5.4193 -2.9337 6.1705 14 6 6.8277 -2.7224 6.6964 15 7 7.1869 -2.2675 7.8635 16 7 8.4792 -2.2550 7.8940 17 7 8.9397 -2.6934 6.7699 18 7 7.9455 -2.9896 6.0135 19 6 7.9844 -3.5268 4.6386 20 6 7.3944 -2.4477 3.7156 21 7 1.5518 -2.1025 1.2491 22 6 0.3102 -2.3898 1.7502 23 1 -0.3088 -1.5982 2.1459 24 6 -0.1522 -3.6987 1.7507 25 7 0.6025 -4.6635 1.2689 26 14 -1.8456 -4.0907 2.4350 27 1 -2.4882 -2.8400 2.9124 28 1 -2.6807 -4.7014 1.3697 29 1 -1.7137 -5.0424 3.5672 30 1 -0.3632 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 3.9331 0.3031 1.3392 38 1 3.9338 -1.1548 0.3180 39 1 3.4283 -1.9360 2.9847 40 1 5.6766 -0.9865 5.2647 41 1 4.1653 -1.8068 4.8184 42 1 5.3040 -3.9583 5.8170 43 1 4.6936 -2.7265 6.9569 44 1 9.0143 -3.7384 4.3516 45 1 7.3867 -4.4363 4.5783 46 1 7.7439 -1.4678 4.0407 47 1 7.7339 -2.6265 2.6953 48 1 2.1080 -2.8135 0.8939 49 1 0.2791 -5.5780 1.2689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319942383.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:26 Heat of formation + Delta-G solvation = 54.790991 kcal Electronic energy + Delta-G solvation = -30031.450422 eV Core-core repulsion = 26030.072538 eV Total energy + Delta-G solvation = -4001.377884 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.37001 -41.23892 -38.98078 -38.05962 -36.01415 -35.23180 -34.87325 -33.65198 -32.39129 -32.03881 -29.78738 -28.19609 -27.40534 -26.05860 -25.48373 -24.69367 -23.63645 -22.52467 -22.07539 -21.13743 -20.54698 -19.18634 -18.79785 -18.23498 -17.79292 -17.13544 -16.85903 -16.44469 -16.13834 -15.70303 -15.54749 -15.19321 -15.05010 -14.89778 -14.71000 -14.61461 -14.19621 -13.82100 -13.76225 -13.55427 -13.40580 -13.09267 -12.93100 -12.88507 -12.84511 -12.81033 -12.67185 -12.41502 -12.34202 -12.22019 -12.02466 -11.94002 -11.89375 -11.77248 -11.71687 -11.41768 -11.25223 -11.10937 -10.84462 -10.63703 -9.93916 -8.90195 -7.83115 -5.08968 0.27052 1.08736 1.14659 1.52504 1.57568 1.62769 1.67966 2.25943 2.63995 2.92453 3.26884 3.41623 3.46974 3.52396 3.71316 3.90299 3.95521 3.97885 4.02531 4.14353 4.19718 4.31049 4.33869 4.38766 4.39192 4.47042 4.50492 4.67926 4.74034 4.81528 4.81937 4.83521 4.91914 4.94502 5.01475 5.06246 5.10034 5.11561 5.17839 5.28866 5.30487 5.36072 5.58147 5.66088 5.69322 5.78861 6.37725 6.65783 7.30006 7.46859 7.53412 8.17137 8.43029 9.39498 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012004 B = 0.003079 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.031985 B = 9090.439573 C =10508.394411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.107 4.107 3 C -0.141 4.141 4 C 0.173 3.827 5 H 0.057 0.943 6 C 0.122 3.878 7 N -0.709 5.709 8 C 0.510 3.490 9 O -0.587 6.587 10 C -0.106 4.106 11 H 0.133 0.867 12 C -0.108 4.108 13 C -0.030 4.030 14 C 0.189 3.811 15 N -0.334 5.334 16 N -0.121 5.121 17 N -0.107 5.107 18 N -0.295 5.295 19 C 0.112 3.888 20 C -0.111 4.111 21 N -0.724 5.724 22 C -0.211 4.211 23 H 0.077 0.923 24 C -0.064 4.064 25 N -0.963 5.963 26 Si 0.950 3.050 27 H -0.270 1.270 28 H -0.307 1.307 29 H -0.297 1.297 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.076 0.924 38 H 0.048 0.952 39 H 0.413 0.587 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.139 0.861 45 H 0.150 0.850 46 H 0.057 0.943 47 H 0.112 0.888 48 H 0.374 0.626 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.428 3.641 3.742 10.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.064 3.936 5 H 0.075 0.925 6 C -0.003 4.003 7 N -0.360 5.360 8 C 0.298 3.702 9 O -0.468 6.468 10 C -0.127 4.127 11 H 0.151 0.849 12 C -0.147 4.147 13 C -0.070 4.070 14 C -0.089 4.089 15 N -0.183 5.183 16 N -0.115 5.115 17 N -0.094 5.094 18 N -0.098 5.098 19 C -0.006 4.006 20 C -0.150 4.150 21 N -0.364 5.364 22 C -0.343 4.343 23 H 0.095 0.905 24 C -0.257 4.257 25 N -0.614 5.614 26 Si 0.782 3.218 27 H -0.194 1.194 28 H -0.235 1.235 29 H -0.224 1.224 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.251 0.749 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.157 0.843 45 H 0.168 0.832 46 H 0.076 0.924 47 H 0.131 0.869 48 H 0.206 0.794 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.769 4.435 4.276 12.407 hybrid contribution -1.557 -1.010 -0.540 1.933 sum 9.212 3.425 3.736 10.514 Atomic orbital electron populations 1.21738 0.95567 1.01782 1.00165 1.21641 0.96277 0.96189 0.98786 1.21854 1.00865 0.95158 1.02031 1.20647 0.90279 0.86113 0.96511 0.92504 1.21570 0.94352 0.95519 0.88865 1.46021 1.07083 1.52400 1.30459 1.21055 0.82055 0.80676 0.86460 1.90669 1.56158 1.50546 1.49440 1.20791 0.96296 1.02679 0.92932 0.84946 1.21440 1.02879 0.98522 0.91860 1.21072 0.84435 1.02843 0.98615 1.26594 0.95086 0.98550 0.88700 1.74878 1.04996 1.19990 1.18436 1.78819 1.02788 1.16715 1.13152 1.78743 1.15792 1.15696 0.99153 1.48955 1.03590 1.41023 1.16262 1.23334 1.07913 0.98196 0.71199 1.21461 0.93352 0.98510 1.01676 1.42542 1.17191 1.03264 1.73427 1.19451 0.93292 0.91933 1.29608 0.90531 1.25218 1.00664 0.96277 1.03546 1.69781 1.38026 0.99674 1.53937 0.85408 0.81600 0.77734 0.77014 1.19436 1.23528 1.22431 0.93506 0.93348 0.93064 0.93195 0.92359 0.92369 0.92297 0.90558 0.93319 0.74940 0.92196 0.87888 0.84866 0.85593 0.84268 0.83234 0.92400 0.86947 0.79369 0.94468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 8.26 71.99 0.59 -3.73 16 2 C -0.11 -3.19 2.69 -10.79 -0.03 -3.22 16 3 C -0.14 -3.29 8.84 71.98 0.64 -2.65 16 4 C 0.17 5.44 2.18 44.99 0.10 5.53 16 5 H 0.06 1.79 8.08 -2.38 -0.02 1.77 16 6 C 0.12 3.45 4.73 86.38 0.41 3.85 16 7 N -0.71 -18.03 5.12 -463.07 -2.37 -20.40 16 8 C 0.51 12.37 7.12 87.66 0.62 13.00 16 9 O -0.59 -18.47 15.54 -3.02 -0.05 -18.52 16 10 C -0.11 -1.60 1.98 -12.88 -0.03 -1.62 16 11 H 0.13 1.38 7.69 -2.39 -0.02 1.36 16 12 C -0.11 -1.51 4.90 30.36 0.15 -1.36 16 13 C -0.03 -0.35 6.03 30.62 0.18 -0.17 16 14 C 0.19 3.73 7.09 139.13 0.99 4.72 16 15 N -0.33 -9.14 12.37 -50.67 -0.63 -9.77 16 16 N -0.12 -3.64 13.45 36.91 0.50 -3.15 16 17 N -0.11 -2.75 13.36 37.02 0.49 -2.26 16 18 N -0.29 -5.48 3.36 -334.76 -1.13 -6.61 16 19 C 0.11 1.09 6.74 86.42 0.58 1.67 16 20 C -0.11 -1.58 4.48 30.16 0.14 -1.45 16 21 N -0.72 -29.02 4.44 -322.95 -1.43 -30.45 16 22 C -0.21 -9.60 7.57 84.03 0.64 -8.97 16 23 H 0.08 3.42 7.40 -2.91 -0.02 3.39 16 24 C -0.06 -3.20 5.50 84.86 0.47 -2.73 16 25 N -0.96 -51.64 13.06 21.65 0.28 -51.35 16 26 Si 0.95 41.40 29.55 68.60 2.03 43.43 16 27 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 28 H -0.31 -14.00 7.11 99.48 0.71 -13.29 16 29 H -0.30 -13.04 7.11 99.48 0.71 -12.33 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 2.01 6.01 -2.39 -0.01 1.99 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.06 1.28 6.55 -2.39 -0.02 1.27 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 37 H 0.08 2.03 6.71 -2.39 -0.02 2.01 16 38 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.41 10.26 6.92 -92.71 -0.64 9.62 16 40 H 0.06 1.05 7.92 -2.39 -0.02 1.03 16 41 H 0.10 1.38 6.60 -2.39 -0.02 1.36 16 42 H 0.13 0.83 7.90 -2.39 -0.02 0.81 16 43 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.15 0.49 7.88 -2.39 -0.02 0.47 16 46 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 47 H 0.11 1.68 7.41 -2.38 -0.02 1.66 16 48 H 0.37 16.74 7.80 -92.70 -0.72 16.02 16 49 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 Total: -1.00 -68.16 386.07 2.76 -65.40 By element: Atomic # 1 Polarization: 31.16 SS G_CDS: -0.38 Total: 30.78 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 5.45 Total: 2.89 kcal Atomic # 7 Polarization: -119.70 SS G_CDS: -4.28 Total: -123.98 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.05 Total: -18.52 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -68.16 2.76 -65.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319942383.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.193 kcal (2) G-P(sol) polarization free energy of solvation -68.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds