Wall clock time and date at job start Tue Mar 31 2020 19:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.53001 * 109.47007 * 119.99971 * 2 1 3 5 5 H 1.09000 * 109.47283 * 299.99876 * 4 2 1 6 6 C 1.52998 * 109.47101 * 59.99949 * 4 2 1 7 7 N 1.46501 * 109.46975 * 174.99974 * 6 4 2 8 8 C 1.34780 * 119.99832 * 179.97438 * 7 6 4 9 9 O 1.21286 * 119.99981 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00027 * 179.97438 * 8 7 6 11 11 H 1.08999 * 107.91256 * 296.61404 * 10 8 7 12 12 C 1.51014 * 108.05110 * 53.18655 * 10 8 7 13 13 C 1.53679 * 110.87323 * 193.87503 * 12 10 8 14 14 C 1.51803 * 106.94443 * 280.97582 * 13 12 10 15 15 N 1.30307 * 127.92362 * 245.58567 * 14 13 12 16 16 N 1.29269 * 107.46776 * 179.97438 * 15 14 13 17 17 N 1.29148 * 109.42803 * 0.27155 * 16 15 14 18 18 N 1.28399 * 108.35706 * 359.56985 * 17 16 15 19 19 C 1.47656 * 127.74087 * 180.13890 * 18 17 16 20 20 C 1.50875 * 108.05449 * 179.97438 * 10 8 7 21 21 N 1.46498 * 109.47259 * 179.97438 * 4 2 1 22 22 C 1.36943 * 120.00237 * 84.99931 * 21 4 2 23 23 H 1.08000 * 119.99419 * 359.97438 * 22 21 4 24 24 C 1.38806 * 120.00179 * 180.02562 * 22 21 4 25 25 N 1.31619 * 119.99996 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99979 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46777 * 89.99863 * 26 24 22 28 28 H 1.48495 * 109.47111 * 209.99468 * 26 24 22 29 29 H 1.48496 * 109.47332 * 330.00049 * 26 24 22 30 30 H 1.09001 * 109.47458 * 300.00235 * 1 2 3 31 31 H 1.09006 * 109.46898 * 60.00235 * 1 2 3 32 32 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47458 * 239.99765 * 2 1 3 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47248 * 299.99800 * 3 2 1 36 36 H 1.09000 * 109.47112 * 60.00092 * 3 2 1 37 37 H 1.09000 * 109.47330 * 55.00246 * 6 4 2 38 38 H 1.08995 * 109.47179 * 294.99780 * 6 4 2 39 39 H 0.96998 * 120.00317 * 0.02562 * 7 6 4 40 40 H 1.08998 * 109.20103 * 314.23616 * 12 10 8 41 41 H 1.09004 * 109.19701 * 73.51821 * 12 10 8 42 42 H 1.09001 * 109.95766 * 40.33808 * 13 12 10 43 43 H 1.09005 * 109.96082 * 161.53064 * 13 12 10 44 44 H 1.08996 * 109.91557 * 233.95235 * 19 18 17 45 45 H 1.09002 * 109.91907 * 355.04163 * 19 18 17 46 46 H 1.09004 * 109.12804 * 45.28500 * 20 10 8 47 47 H 1.09001 * 109.08696 * 286.15031 * 20 10 8 48 48 H 0.96998 * 120.00141 * 265.00343 * 21 4 2 49 49 H 0.97002 * 119.99862 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1637 1.2493 7 7 2.1140 -2.8882 2.3807 8 6 1.8051 -4.1845 2.5828 9 8 1.0438 -4.7513 1.8276 10 6 2.4064 -4.9299 3.7463 11 1 3.4859 -4.9660 3.5995 12 6 2.1318 -4.1373 5.0021 13 6 2.9956 -4.6426 6.1683 14 6 2.3325 -5.9017 6.6970 15 7 1.7850 -6.0887 7.8645 16 7 1.3423 -7.3028 7.8955 17 7 1.6055 -7.8848 6.7730 18 7 2.2100 -7.0442 6.0137 19 6 2.7013 -7.2597 4.6380 20 6 1.8823 -6.3444 3.7165 21 7 3.5049 -0.7218 1.2490 22 6 4.1902 0.3528 1.7499 23 1 3.6505 1.2009 2.1447 24 6 5.5782 0.3525 1.7492 25 7 6.2358 -0.6809 1.2675 26 14 6.5129 1.8187 2.4318 27 1 6.7611 1.6160 3.8818 28 1 7.8101 1.9530 1.7217 29 1 5.7106 3.0527 2.2347 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.8183 -2.6511 0.3179 38 1 0.4436 -2.1650 1.3389 39 1 2.7225 -2.4348 2.9849 40 1 2.3561 -3.0865 4.8189 41 1 1.0790 -4.2375 5.2661 42 1 4.0009 -4.8718 5.8147 43 1 3.0408 -3.8869 6.9527 44 1 3.7581 -6.9999 4.5762 45 1 2.5580 -8.3015 4.3514 46 1 1.9368 -6.7241 2.6962 47 1 0.8424 -6.3461 4.0431 48 1 3.9895 -1.4834 0.8940 49 1 7.2058 -0.6813 1.2674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319942385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:32 Heat of formation + Delta-G solvation = 75.648646 kcal Electronic energy + Delta-G solvation = -30032.675434 eV Core-core repulsion = 26032.202006 eV Total energy + Delta-G solvation = -4000.473428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.48593 -40.24421 -37.81332 -37.03656 -35.20171 -34.04476 -33.22504 -32.80593 -31.59230 -30.48248 -28.56244 -27.26483 -26.16097 -25.24482 -23.95884 -23.75196 -22.43537 -21.50160 -21.29746 -20.07044 -19.32847 -18.07936 -17.61828 -17.18297 -16.77873 -16.06422 -15.69354 -15.37077 -15.03623 -14.59389 -14.42586 -14.09816 -13.93213 -13.78725 -13.54654 -13.33292 -13.27509 -12.84954 -12.80433 -12.38773 -12.24257 -12.15966 -12.11336 -12.01672 -11.70701 -11.50739 -11.25416 -11.19376 -11.12347 -11.04976 -10.99339 -10.89802 -10.73311 -10.38960 -10.20970 -10.18335 -10.06397 -9.67291 -9.61771 -9.02508 -8.78003 -7.14443 -5.93129 -3.22490 1.12658 1.78264 2.08826 2.69259 3.24465 3.31560 3.38938 3.40046 3.63622 3.93305 4.11944 4.22815 4.39723 4.44429 4.63658 4.65537 4.70588 4.91608 5.03919 5.13571 5.20826 5.24024 5.29942 5.41037 5.42712 5.46592 5.52658 5.55360 5.57701 5.66072 5.73328 5.77355 5.80103 5.90195 6.02099 6.09264 6.15091 6.29258 6.35343 6.44390 6.53449 6.57094 6.78956 6.97734 7.21327 7.56884 7.73220 8.24159 8.35304 8.46195 9.36718 9.90321 10.26412 11.28466 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003079 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.421406 B = 9090.731335 C =10508.407524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.170 3.830 5 H 0.054 0.946 6 C 0.112 3.888 7 N -0.708 5.708 8 C 0.513 3.487 9 O -0.553 6.553 10 C -0.115 4.115 11 H 0.106 0.894 12 C -0.115 4.115 13 C -0.036 4.036 14 C 0.184 3.816 15 N -0.303 5.303 16 N -0.087 5.087 17 N -0.096 5.096 18 N -0.302 5.302 19 C 0.114 3.886 20 C -0.119 4.119 21 N -0.721 5.721 22 C -0.238 4.238 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.929 5.929 26 Si 0.901 3.099 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.031 0.969 36 H 0.040 0.960 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.411 0.589 40 H 0.098 0.902 41 H 0.075 0.925 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.121 0.879 46 H 0.113 0.887 47 H 0.080 0.920 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.391 -8.047 3.652 10.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.059 3.941 5 H 0.072 0.928 6 C -0.012 4.012 7 N -0.360 5.360 8 C 0.298 3.702 9 O -0.431 6.431 10 C -0.136 4.136 11 H 0.124 0.876 12 C -0.154 4.154 13 C -0.076 4.076 14 C -0.094 4.094 15 N -0.152 5.152 16 N -0.081 5.081 17 N -0.082 5.082 18 N -0.105 5.105 19 C -0.006 4.006 20 C -0.158 4.158 21 N -0.363 5.363 22 C -0.369 4.369 23 H 0.091 0.909 24 C -0.205 4.205 25 N -0.577 5.577 26 Si 0.733 3.267 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.207 1.207 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.248 0.752 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.121 0.879 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.139 0.861 46 H 0.131 0.869 47 H 0.099 0.901 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.533 -9.066 4.166 12.502 hybrid contribution 1.521 1.216 -0.393 1.986 sum -6.012 -7.851 3.773 10.584 Atomic orbital electron populations 1.21945 0.96864 1.00927 1.00996 1.21727 0.93530 0.97831 1.00018 1.21819 1.04203 0.94599 0.99050 1.20546 0.86399 0.91047 0.96061 0.92839 1.21766 0.97309 0.93308 0.88805 1.46024 1.48253 1.10818 1.30863 1.20363 0.81541 0.82380 0.85943 1.90684 1.36687 1.67862 1.47899 1.20743 1.03227 0.94999 0.94664 0.87590 1.21424 1.01048 1.00912 0.92021 1.20753 0.98179 0.89800 0.98913 1.26063 1.01450 0.92466 0.89445 1.74963 1.13716 1.10069 1.16407 1.78856 1.17094 1.00006 1.12116 1.78837 1.12003 1.18285 0.99035 1.48684 1.37681 1.08678 1.15459 1.22901 1.00065 1.04014 0.73614 1.21525 1.00150 0.92698 1.01390 1.42460 0.98689 1.21240 1.73874 1.19191 0.88753 0.96446 1.32491 0.90914 1.24707 0.96449 0.97681 1.01672 1.69653 1.06961 1.29854 1.51246 0.86285 0.79631 0.82362 0.78471 1.21706 1.21874 1.20734 0.93172 0.93536 0.93092 0.91918 0.89486 0.94974 0.94052 0.91839 0.91560 0.75207 0.88406 0.90633 0.87914 0.86550 0.86782 0.86075 0.86878 0.90118 0.78138 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.84 37.15 0.33 -1.61 16 2 C -0.11 -1.71 2.69 -90.62 -0.24 -1.96 16 3 C -0.14 -2.35 8.26 37.16 0.31 -2.04 16 4 C 0.17 2.79 2.18 -67.93 -0.15 2.64 16 5 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 6 C 0.11 1.66 4.73 -4.04 -0.02 1.65 16 7 N -0.71 -9.54 5.12 -60.29 -0.31 -9.85 16 8 C 0.51 6.59 7.12 -10.98 -0.08 6.51 16 9 O -0.55 -8.92 15.54 5.55 0.09 -8.83 16 10 C -0.12 -1.01 1.98 -93.84 -0.19 -1.19 16 11 H 0.11 0.76 7.68 -51.93 -0.40 0.37 16 12 C -0.12 -0.93 4.89 -27.38 -0.13 -1.07 16 13 C -0.04 -0.27 6.00 -26.99 -0.16 -0.43 16 14 C 0.18 1.97 7.10 -156.73 -1.11 0.86 16 15 N -0.30 -4.21 12.37 32.63 0.40 -3.81 16 16 N -0.09 -1.31 13.45 60.32 0.81 -0.49 16 17 N -0.10 -1.26 13.36 60.35 0.81 -0.45 16 18 N -0.30 -3.08 3.36 -57.29 -0.19 -3.27 16 19 C 0.11 0.73 6.73 -3.13 -0.02 0.70 16 20 C -0.12 -0.96 4.47 -27.52 -0.12 -1.08 16 21 N -0.72 -14.73 4.44 -53.43 -0.24 -14.97 16 22 C -0.24 -5.53 7.57 -15.06 -0.11 -5.64 16 23 H 0.07 1.68 7.39 -52.49 -0.39 1.29 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -24.81 13.06 55.49 0.72 -24.08 16 26 Si 0.90 20.21 29.55 -169.99 -5.02 15.19 16 27 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 28 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 30 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.63 6.55 -51.93 -0.34 0.29 16 33 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.75 6.01 -51.93 -0.31 1.44 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.94 6.71 -51.93 -0.35 0.59 16 39 H 0.41 5.48 6.92 -40.82 -0.28 5.20 16 40 H 0.10 0.78 6.60 -51.93 -0.34 0.43 16 41 H 0.07 0.71 7.92 -51.93 -0.41 0.30 16 42 H 0.10 0.56 7.89 -51.93 -0.41 0.15 16 43 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.11 0.45 7.87 -51.93 -0.41 0.04 16 45 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.11 0.94 7.41 -51.93 -0.38 0.56 16 47 H 0.08 0.80 8.08 -51.93 -0.42 0.38 16 48 H 0.38 8.66 7.80 -40.82 -0.32 8.35 16 49 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -30.74 385.99 -6.62 -37.36 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -7.70 Total: 10.37 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.80 Total: -2.97 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 2.01 Total: -56.92 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.74 -6.62 -37.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319942385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.007 kcal (2) G-P(sol) polarization free energy of solvation -30.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds