Wall clock time and date at job start Tue Mar 31 2020 19:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47232 * 2 1 4 4 C 1.53001 * 109.47007 * 119.99971 * 2 1 3 5 5 H 1.09000 * 109.47283 * 299.99876 * 4 2 1 6 6 C 1.52998 * 109.47101 * 59.99949 * 4 2 1 7 7 N 1.46501 * 109.46975 * 174.99974 * 6 4 2 8 8 C 1.34780 * 119.99832 * 179.97438 * 7 6 4 9 9 O 1.21286 * 119.99981 * 0.02562 * 8 7 6 10 10 C 1.50702 * 120.00027 * 179.97438 * 8 7 6 11 11 H 1.08999 * 107.91256 * 296.61404 * 10 8 7 12 12 C 1.51014 * 108.05110 * 53.18655 * 10 8 7 13 13 C 1.53679 * 110.87323 * 193.87503 * 12 10 8 14 14 C 1.51803 * 106.94443 * 280.97582 * 13 12 10 15 15 N 1.30307 * 127.92362 * 245.58567 * 14 13 12 16 16 N 1.29269 * 107.46776 * 179.97438 * 15 14 13 17 17 N 1.29148 * 109.42803 * 0.27155 * 16 15 14 18 18 N 1.28399 * 108.35706 * 359.56985 * 17 16 15 19 19 C 1.47656 * 127.74087 * 180.13890 * 18 17 16 20 20 C 1.50875 * 108.05449 * 179.97438 * 10 8 7 21 21 N 1.46498 * 109.47259 * 179.97438 * 4 2 1 22 22 C 1.36943 * 120.00237 * 84.99931 * 21 4 2 23 23 H 1.08000 * 119.99419 * 359.97438 * 22 21 4 24 24 C 1.38806 * 120.00179 * 180.02562 * 22 21 4 25 25 N 1.31619 * 119.99996 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99979 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46777 * 89.99863 * 26 24 22 28 28 H 1.48495 * 109.47111 * 209.99468 * 26 24 22 29 29 H 1.48496 * 109.47332 * 330.00049 * 26 24 22 30 30 H 1.09001 * 109.47458 * 300.00235 * 1 2 3 31 31 H 1.09006 * 109.46898 * 60.00235 * 1 2 3 32 32 H 1.09001 * 109.47232 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47458 * 239.99765 * 2 1 3 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47248 * 299.99800 * 3 2 1 36 36 H 1.09000 * 109.47112 * 60.00092 * 3 2 1 37 37 H 1.09000 * 109.47330 * 55.00246 * 6 4 2 38 38 H 1.08995 * 109.47179 * 294.99780 * 6 4 2 39 39 H 0.96998 * 120.00317 * 0.02562 * 7 6 4 40 40 H 1.08998 * 109.20103 * 314.23616 * 12 10 8 41 41 H 1.09004 * 109.19701 * 73.51821 * 12 10 8 42 42 H 1.09001 * 109.95766 * 40.33808 * 13 12 10 43 43 H 1.09005 * 109.96082 * 161.53064 * 13 12 10 44 44 H 1.08996 * 109.91557 * 233.95235 * 19 18 17 45 45 H 1.09002 * 109.91907 * 355.04163 * 19 18 17 46 46 H 1.09004 * 109.12804 * 45.28500 * 20 10 8 47 47 H 1.09001 * 109.08696 * 286.15031 * 20 10 8 48 48 H 0.96998 * 120.00141 * 265.00343 * 21 4 2 49 49 H 0.97002 * 119.99862 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6766 -0.2074 2.1393 6 6 1.5299 -2.1637 1.2493 7 7 2.1140 -2.8882 2.3807 8 6 1.8051 -4.1845 2.5828 9 8 1.0438 -4.7513 1.8276 10 6 2.4064 -4.9299 3.7463 11 1 3.4859 -4.9660 3.5995 12 6 2.1318 -4.1373 5.0021 13 6 2.9956 -4.6426 6.1683 14 6 2.3325 -5.9017 6.6970 15 7 1.7850 -6.0887 7.8645 16 7 1.3423 -7.3028 7.8955 17 7 1.6055 -7.8848 6.7730 18 7 2.2100 -7.0442 6.0137 19 6 2.7013 -7.2597 4.6380 20 6 1.8823 -6.3444 3.7165 21 7 3.5049 -0.7218 1.2490 22 6 4.1902 0.3528 1.7499 23 1 3.6505 1.2009 2.1447 24 6 5.5782 0.3525 1.7492 25 7 6.2358 -0.6809 1.2675 26 14 6.5129 1.8187 2.4318 27 1 6.7611 1.6160 3.8818 28 1 7.8101 1.9530 1.7217 29 1 5.7106 3.0527 2.2347 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.8183 -2.6511 0.3179 38 1 0.4436 -2.1650 1.3389 39 1 2.7225 -2.4348 2.9849 40 1 2.3561 -3.0865 4.8189 41 1 1.0790 -4.2375 5.2661 42 1 4.0009 -4.8718 5.8147 43 1 3.0408 -3.8869 6.9527 44 1 3.7581 -6.9999 4.5762 45 1 2.5580 -8.3015 4.3514 46 1 1.9368 -6.7241 2.6962 47 1 0.8424 -6.3461 4.0431 48 1 3.9895 -1.4834 0.8940 49 1 7.2058 -0.6813 1.2674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319942385.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:31 Heat of formation + Delta-G solvation = 54.828567 kcal Electronic energy + Delta-G solvation = -30033.578260 eV Core-core repulsion = 26032.202006 eV Total energy + Delta-G solvation = -4001.376254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.37225 -41.24240 -38.98571 -38.07202 -36.02858 -35.23129 -34.87283 -33.65334 -32.41144 -32.04441 -29.79127 -28.20079 -27.40494 -26.05753 -25.47994 -24.69652 -23.63386 -22.52239 -22.07058 -21.13800 -20.54825 -19.18542 -18.80570 -18.23426 -17.79558 -17.13503 -16.85772 -16.45424 -16.14124 -15.70634 -15.54973 -15.19698 -15.04920 -14.89656 -14.70694 -14.61175 -14.19686 -13.82552 -13.76750 -13.56077 -13.40676 -13.09313 -12.93305 -12.88285 -12.81815 -12.80267 -12.66403 -12.41531 -12.34050 -12.23156 -12.02760 -11.98653 -11.88965 -11.77004 -11.71210 -11.41771 -11.24993 -11.10948 -10.83433 -10.63715 -9.93889 -8.90032 -7.82836 -5.08777 0.26943 1.08585 1.14549 1.53621 1.57610 1.62019 1.67963 2.26034 2.64202 2.92058 3.26883 3.42016 3.46861 3.52573 3.71553 3.90520 3.95625 3.97907 4.03088 4.14322 4.19612 4.31065 4.33849 4.38834 4.39515 4.47118 4.50530 4.67952 4.73860 4.81463 4.81936 4.83461 4.91969 4.94418 5.01462 5.06207 5.09977 5.11479 5.17835 5.28897 5.30479 5.36004 5.58114 5.66023 5.69190 5.78898 6.37797 6.65821 7.30019 7.47030 7.53292 8.17386 8.43295 9.39554 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012007 B = 0.003079 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.421406 B = 9090.731335 C =10508.407524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.173 3.827 5 H 0.057 0.943 6 C 0.122 3.878 7 N -0.708 5.708 8 C 0.510 3.490 9 O -0.587 6.587 10 C -0.106 4.106 11 H 0.133 0.867 12 C -0.108 4.108 13 C -0.030 4.030 14 C 0.190 3.810 15 N -0.334 5.334 16 N -0.121 5.121 17 N -0.107 5.107 18 N -0.295 5.295 19 C 0.112 3.888 20 C -0.111 4.111 21 N -0.724 5.724 22 C -0.213 4.213 23 H 0.076 0.924 24 C -0.064 4.064 25 N -0.963 5.963 26 Si 0.951 3.049 27 H -0.288 1.288 28 H -0.308 1.308 29 H -0.277 1.277 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.413 0.587 40 H 0.103 0.897 41 H 0.059 0.941 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.150 0.850 45 H 0.139 0.861 46 H 0.113 0.887 47 H 0.057 0.943 48 H 0.374 0.626 49 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 -7.668 3.708 10.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.129 4.129 3 C -0.192 4.192 4 C 0.065 3.935 5 H 0.075 0.925 6 C -0.003 4.003 7 N -0.360 5.360 8 C 0.298 3.702 9 O -0.468 6.468 10 C -0.127 4.127 11 H 0.150 0.850 12 C -0.147 4.147 13 C -0.070 4.070 14 C -0.089 4.089 15 N -0.183 5.183 16 N -0.115 5.115 17 N -0.094 5.094 18 N -0.098 5.098 19 C -0.006 4.006 20 C -0.150 4.150 21 N -0.364 5.364 22 C -0.345 4.345 23 H 0.094 0.906 24 C -0.256 4.256 25 N -0.614 5.614 26 Si 0.782 3.218 27 H -0.215 1.215 28 H -0.235 1.235 29 H -0.202 1.202 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.251 0.749 40 H 0.121 0.879 41 H 0.078 0.922 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.167 0.833 45 H 0.157 0.843 46 H 0.131 0.869 47 H 0.076 0.924 48 H 0.206 0.794 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.729 -8.667 4.231 12.360 hybrid contribution 1.460 1.138 -0.522 1.923 sum -6.269 -7.529 3.709 10.476 Atomic orbital electron populations 1.21854 0.94238 1.01787 1.02029 1.21639 0.95682 0.96766 0.98796 1.21735 1.01730 0.95627 1.00150 1.20649 0.84052 0.92342 0.96504 0.92502 1.21570 0.97786 0.92088 0.88862 1.46021 1.48268 1.11231 1.30438 1.21053 0.80782 0.81945 0.86457 1.90671 1.38253 1.68428 1.49461 1.20793 1.04360 0.94614 0.92933 0.84956 1.21348 1.00379 1.01109 0.91888 1.20955 0.98959 0.88452 0.98627 1.26577 1.00363 0.93324 0.88639 1.74875 1.14936 1.10046 1.18429 1.78820 1.18593 1.00789 1.13267 1.78745 1.12432 1.19072 0.99118 1.48956 1.36640 1.08098 1.16132 1.23284 1.01373 1.04798 0.71190 1.21421 0.99173 0.92715 1.01691 1.42533 1.00331 1.20109 1.73449 1.19412 0.88697 0.96570 1.29777 0.90569 1.25215 0.97461 0.99482 1.03488 1.69772 1.06343 1.31453 1.53831 0.85478 0.77974 0.80593 0.77710 1.21510 1.23533 1.20216 0.92297 0.92374 0.92352 0.93191 0.93081 0.93358 0.93527 0.93313 0.90561 0.74945 0.87867 0.92202 0.84896 0.85603 0.83273 0.84255 0.86914 0.92395 0.79367 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.84 71.98 0.64 -2.65 16 2 C -0.11 -3.19 2.69 -10.80 -0.03 -3.22 16 3 C -0.14 -4.33 8.26 71.98 0.59 -3.74 16 4 C 0.17 5.44 2.18 44.99 0.10 5.54 16 5 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 6 C 0.12 3.45 4.73 86.38 0.41 3.86 16 7 N -0.71 -18.04 5.12 -463.05 -2.37 -20.42 16 8 C 0.51 12.38 7.12 87.66 0.62 13.01 16 9 O -0.59 -18.47 15.54 -3.05 -0.05 -18.52 16 10 C -0.11 -1.60 1.98 -12.88 -0.03 -1.63 16 11 H 0.13 1.38 7.68 -2.39 -0.02 1.37 16 12 C -0.11 -1.51 4.89 30.18 0.15 -1.36 16 13 C -0.03 -0.36 6.00 30.43 0.18 -0.17 16 14 C 0.19 3.74 7.10 139.13 0.99 4.73 16 15 N -0.33 -9.14 12.37 -50.68 -0.63 -9.77 16 16 N -0.12 -3.64 13.45 36.91 0.50 -3.15 16 17 N -0.11 -2.75 13.36 37.02 0.49 -2.25 16 18 N -0.29 -5.49 3.36 -335.15 -1.13 -6.62 16 19 C 0.11 1.10 6.73 86.34 0.58 1.68 16 20 C -0.11 -1.58 4.47 30.09 0.13 -1.45 16 21 N -0.72 -29.05 4.44 -322.95 -1.43 -30.48 16 22 C -0.21 -9.70 7.57 84.03 0.64 -9.06 16 23 H 0.08 3.40 7.39 -2.91 -0.02 3.38 16 24 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 25 N -0.96 -51.64 13.06 21.65 0.28 -51.36 16 26 Si 0.95 41.37 29.55 68.60 2.03 43.40 16 27 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 28 H -0.31 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 30 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.06 1.28 6.55 -2.39 -0.02 1.27 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 2.01 6.01 -2.39 -0.01 1.99 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 2.03 6.71 -2.39 -0.02 2.01 16 39 H 0.41 10.27 6.92 -92.71 -0.64 9.63 16 40 H 0.10 1.38 6.60 -2.39 -0.02 1.37 16 41 H 0.06 1.05 7.92 -2.38 -0.02 1.03 16 42 H 0.13 0.84 7.89 -2.39 -0.02 0.82 16 43 H 0.13 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.15 0.49 7.87 -2.39 -0.02 0.48 16 45 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.11 1.68 7.41 -2.38 -0.02 1.67 16 47 H 0.06 1.11 8.08 -2.39 -0.02 1.09 16 48 H 0.37 16.76 7.80 -92.71 -0.72 16.03 16 49 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 Total: -1.00 -68.06 385.99 2.76 -65.30 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.38 Total: 31.03 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 5.44 Total: 2.83 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -4.28 Total: -124.04 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.05 Total: -18.52 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -68.06 2.76 -65.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319942385.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.131 kcal (2) G-P(sol) polarization free energy of solvation -68.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds