Wall clock time and date at job start Tue Mar 31 2020 19:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46587 * 2 1 4 4 C 1.53001 * 109.47296 * 120.00040 * 2 1 3 5 5 H 1.08995 * 109.46954 * 185.00415 * 4 2 1 6 6 C 1.52999 * 109.46922 * 304.99925 * 4 2 1 7 7 N 1.46501 * 109.47224 * 174.99930 * 6 4 2 8 8 C 1.34774 * 120.00166 * 180.02562 * 7 6 4 9 9 O 1.21277 * 120.00244 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99696 * 180.02562 * 8 7 6 11 11 H 1.08999 * 107.91055 * 60.00118 * 10 8 7 12 12 C 1.51012 * 108.05583 * 303.39067 * 10 8 7 13 13 C 1.53719 * 110.85223 * 166.10171 * 12 10 8 14 14 C 1.51809 * 106.91372 * 79.06509 * 13 12 10 15 15 N 1.30311 * 127.91201 * 114.40121 * 14 13 12 16 16 N 1.29268 * 107.46384 * 179.97438 * 15 14 13 17 17 N 1.29149 * 109.43125 * 359.97438 * 16 15 14 18 18 N 1.28394 * 108.36133 * 0.02562 * 17 16 15 19 19 C 1.47659 * 127.76013 * 179.97438 * 18 17 16 20 20 C 1.50879 * 108.05277 * 176.60940 * 10 8 7 21 21 N 1.46494 * 109.46915 * 64.99871 * 4 2 1 22 22 C 1.36945 * 119.99612 * 85.00420 * 21 4 2 23 23 H 1.07999 * 120.00077 * 359.97438 * 22 21 4 24 24 C 1.38812 * 119.99637 * 179.97438 * 22 21 4 25 25 N 1.31617 * 120.00227 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47118 * 90.00067 * 26 24 22 28 28 H 1.48499 * 109.47293 * 210.00071 * 26 24 22 29 29 H 1.48504 * 109.47104 * 330.00316 * 26 24 22 30 30 H 1.08998 * 109.46775 * 299.99606 * 1 2 3 31 31 H 1.08997 * 109.47144 * 60.00402 * 1 2 3 32 32 H 1.09008 * 109.46481 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46775 * 240.00394 * 2 1 3 34 34 H 1.08995 * 109.46807 * 60.00071 * 3 2 1 35 35 H 1.08999 * 109.46377 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47050 * 299.99655 * 3 2 1 37 37 H 1.09000 * 109.47487 * 295.00520 * 6 4 2 38 38 H 1.09005 * 109.47191 * 55.00630 * 6 4 2 39 39 H 0.97006 * 119.99214 * 0.02562 * 7 6 4 40 40 H 1.08996 * 109.19740 * 286.49438 * 12 10 8 41 41 H 1.09004 * 109.19814 * 45.78254 * 12 10 8 42 42 H 1.08996 * 109.99256 * 319.70682 * 13 12 10 43 43 H 1.08999 * 110.03531 * 198.43891 * 13 12 10 44 44 H 1.08997 * 109.91666 * 126.32930 * 19 18 17 45 45 H 1.09005 * 109.98178 * 5.19585 * 19 18 17 46 46 H 1.08994 * 109.12921 * 314.73764 * 20 10 8 47 47 H 1.09003 * 109.12888 * 73.90130 * 20 10 8 48 48 H 0.96995 * 120.00290 * 265.27311 * 21 4 2 49 49 H 0.97005 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1264 -0.6442 1.2951 6 6 1.4301 -0.0762 2.4953 7 7 1.8228 -0.8396 3.6824 8 6 1.3988 -0.4541 4.9022 9 8 0.6918 0.5245 5.0172 10 6 1.8034 -1.2392 6.1234 11 1 2.8915 -1.2246 6.1859 12 6 1.3651 -2.6707 5.9259 13 6 2.0354 -3.5951 6.9550 14 6 1.2709 -3.4348 8.2567 15 7 0.5525 -4.3268 8.8784 16 7 0.0814 -3.7701 9.9457 17 7 0.4894 -2.5464 10.0080 18 7 1.2236 -2.3121 8.9810 19 6 1.9072 -1.0522 8.6267 20 6 1.2557 -0.5304 7.3375 21 7 1.6525 -2.1328 1.1905 22 6 2.4348 -3.0300 0.5134 23 1 3.3371 -2.6968 0.0223 24 6 2.0678 -4.3676 0.4582 25 7 0.9679 -4.7734 1.0562 26 14 3.1344 -5.5913 -0.4661 27 1 4.1458 -6.1637 0.4585 28 1 2.2829 -6.6820 -1.0051 29 1 3.8226 -4.9009 -1.5864 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.7896 0.9487 2.5870 38 1 0.3435 -0.0737 2.4082 39 1 2.3881 -1.6226 3.5903 40 1 0.2828 -2.7330 6.0386 41 1 1.6394 -2.9943 4.9218 42 1 3.0759 -3.3030 7.0963 43 1 1.9824 -4.6302 6.6176 44 1 2.9675 -1.2399 8.4575 45 1 1.7826 -0.3229 9.4273 46 1 1.4510 0.5380 7.2457 47 1 0.1792 -0.6933 7.3909 48 1 0.8399 -2.4312 1.6280 49 1 0.7112 -5.7081 1.0173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319942389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:41 Heat of formation + Delta-G solvation = 76.716220 kcal Electronic energy + Delta-G solvation = -30222.262789 eV Core-core repulsion = 26221.835655 eV Total energy + Delta-G solvation = -4000.427134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.41703 -40.22582 -37.86798 -37.02757 -35.11971 -33.92232 -33.34043 -32.74761 -31.51074 -30.46618 -28.24895 -26.86377 -26.74622 -25.17259 -23.99804 -23.70584 -22.64637 -21.78991 -21.26396 -19.97668 -18.77391 -18.01328 -17.53570 -17.17258 -16.73740 -16.22531 -15.62098 -15.33409 -14.91895 -14.73272 -14.28284 -14.03912 -13.92199 -13.61501 -13.50357 -13.46103 -13.21272 -12.96901 -12.74394 -12.60136 -12.27845 -12.14518 -12.09746 -11.97712 -11.53768 -11.43664 -11.21819 -11.16759 -11.07785 -11.07291 -10.96744 -10.94007 -10.72323 -10.43494 -10.27009 -10.13907 -9.89557 -9.76336 -9.61514 -9.02801 -8.74517 -7.12729 -5.90989 -3.21424 1.18758 1.83035 2.16829 2.69479 3.27649 3.33229 3.40254 3.41985 3.73024 3.95324 4.15349 4.26527 4.46105 4.47325 4.64998 4.68643 4.77461 4.98402 5.05078 5.16032 5.27039 5.28625 5.30259 5.41337 5.47047 5.53422 5.55153 5.64261 5.65645 5.66565 5.72159 5.81241 5.87981 5.93666 6.00403 6.07612 6.09265 6.24886 6.29349 6.35383 6.52071 6.62918 6.75278 6.91526 6.96839 7.57626 7.74552 8.26139 8.36596 8.53348 9.38771 9.92130 10.28040 11.30401 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003470 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.141319 B = 8066.645067 C =10118.857389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 C -0.148 4.148 4 C 0.171 3.829 5 H 0.053 0.947 6 C 0.109 3.891 7 N -0.708 5.708 8 C 0.512 3.488 9 O -0.552 6.552 10 C -0.112 4.112 11 H 0.100 0.900 12 C -0.118 4.118 13 C -0.034 4.034 14 C 0.186 3.814 15 N -0.300 5.300 16 N -0.087 5.087 17 N -0.098 5.098 18 N -0.304 5.304 19 C 0.116 3.884 20 C -0.120 4.120 21 N -0.720 5.720 22 C -0.245 4.245 23 H 0.070 0.930 24 C -0.006 4.006 25 N -0.928 5.928 26 Si 0.903 3.097 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.410 0.590 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.385 0.615 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.907 10.211 9.761 15.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.206 4.206 4 C 0.060 3.940 5 H 0.071 0.929 6 C -0.015 4.015 7 N -0.360 5.360 8 C 0.297 3.703 9 O -0.431 6.431 10 C -0.133 4.133 11 H 0.118 0.882 12 C -0.157 4.157 13 C -0.075 4.075 14 C -0.093 4.093 15 N -0.149 5.149 16 N -0.080 5.080 17 N -0.083 5.083 18 N -0.107 5.107 19 C -0.005 4.005 20 C -0.159 4.159 21 N -0.361 5.361 22 C -0.376 4.376 23 H 0.088 0.912 24 C -0.202 4.202 25 N -0.575 5.575 26 Si 0.734 3.266 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.209 1.209 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.247 0.753 40 H 0.095 0.905 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.136 0.864 44 H 0.130 0.870 45 H 0.138 0.862 46 H 0.129 0.871 47 H 0.101 0.899 48 H 0.219 0.781 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.691 10.347 10.809 15.681 hybrid contribution 1.026 -0.759 -1.234 1.775 sum 5.717 9.588 9.574 14.707 Atomic orbital electron populations 1.21798 0.95826 1.02345 0.99955 1.21747 0.96032 0.94610 1.01009 1.21911 1.00505 0.97201 1.00966 1.20504 0.97105 0.85950 0.90436 0.92894 1.21858 1.00554 0.94601 0.84505 1.46034 1.52240 1.31896 1.05809 1.20387 0.80338 0.84858 0.84743 1.90681 1.37944 1.27967 1.86530 1.20733 1.02975 0.95722 0.93860 0.88198 1.21455 1.02148 0.91236 1.00871 1.20760 0.97296 1.04054 0.85376 1.26117 1.00788 0.83394 0.98955 1.74992 1.11519 1.25374 1.03029 1.78859 1.18050 0.98284 1.12814 1.78819 1.07964 1.13654 1.07896 1.48656 1.33230 1.13497 1.15318 1.22856 0.96910 0.81098 0.99599 1.21543 1.01912 1.02117 0.90307 1.42451 1.28649 1.01134 1.63894 1.19187 1.03675 0.88457 1.26296 0.91193 1.24702 0.97583 0.97130 1.00829 1.69645 1.24304 1.15788 1.47771 0.86267 0.79460 0.81339 0.79508 1.21691 1.21827 1.20853 0.93465 0.94139 0.91602 0.90748 0.93071 0.93208 0.93513 0.91710 0.91238 0.75265 0.90467 0.87617 0.88264 0.86384 0.87003 0.86177 0.87144 0.89949 0.78072 0.93359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.60 37.16 0.32 -1.91 16 2 C -0.11 -1.75 2.88 -90.61 -0.26 -2.01 16 3 C -0.15 -1.88 8.95 37.16 0.33 -1.55 16 4 C 0.17 2.81 2.22 -67.93 -0.15 2.66 16 5 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 6 C 0.11 1.62 4.54 -4.04 -0.02 1.60 16 7 N -0.71 -9.59 5.11 -60.29 -0.31 -9.90 16 8 C 0.51 6.61 7.07 -10.99 -0.08 6.53 16 9 O -0.55 -8.96 15.58 5.56 0.09 -8.87 16 10 C -0.11 -0.98 1.96 -93.84 -0.18 -1.17 16 11 H 0.10 0.59 7.68 -51.93 -0.40 0.19 16 12 C -0.12 -1.17 4.89 -27.36 -0.13 -1.30 16 13 C -0.03 -0.30 6.00 -26.96 -0.16 -0.46 16 14 C 0.19 2.18 7.10 -156.72 -1.11 1.07 16 15 N -0.30 -4.56 12.37 32.63 0.40 -4.16 16 16 N -0.09 -1.38 13.45 60.32 0.81 -0.56 16 17 N -0.10 -1.34 13.36 60.35 0.81 -0.53 16 18 N -0.30 -3.25 3.36 -57.26 -0.19 -3.44 16 19 C 0.12 0.72 6.73 -3.10 -0.02 0.70 16 20 C -0.12 -0.98 4.44 -27.49 -0.12 -1.10 16 21 N -0.72 -14.93 4.01 -53.43 -0.21 -15.15 16 22 C -0.25 -5.87 9.93 -15.06 -0.15 -6.02 16 23 H 0.07 1.66 7.83 -52.49 -0.41 1.24 16 24 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 25 N -0.93 -25.14 13.06 55.49 0.72 -24.42 16 26 Si 0.90 20.50 29.55 -169.99 -5.02 15.48 16 27 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.05 0.70 6.23 -51.93 -0.32 0.37 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 1.21 7.75 -51.92 -0.40 0.81 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.05 0.62 6.68 -51.93 -0.35 0.27 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.91 6.81 -51.93 -0.35 0.56 16 38 H 0.07 1.14 6.06 -51.93 -0.31 0.83 16 39 H 0.41 5.50 7.14 -40.82 -0.29 5.21 16 40 H 0.08 0.93 7.92 -51.93 -0.41 0.52 16 41 H 0.11 1.17 6.80 -51.93 -0.35 0.82 16 42 H 0.10 0.55 7.89 -51.93 -0.41 0.14 16 43 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.11 0.37 7.88 -51.93 -0.41 -0.03 16 45 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.11 0.87 7.47 -51.93 -0.39 0.48 16 47 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 48 H 0.39 8.78 7.80 -40.82 -0.32 8.47 16 49 H 0.26 6.89 8.31 -40.82 -0.34 6.56 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -31.44 387.25 -6.55 -37.99 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -7.64 Total: 10.94 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.84 Total: -3.20 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: 2.03 Total: -58.16 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.09 Total: -8.87 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.44 -6.55 -37.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319942389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.703 kcal (2) G-P(sol) polarization free energy of solvation -31.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds