Wall clock time and date at job start Tue Mar 31 2020 19:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53006 * 109.46587 * 2 1 4 4 C 1.53001 * 109.47296 * 120.00040 * 2 1 3 5 5 H 1.08995 * 109.46954 * 185.00415 * 4 2 1 6 6 C 1.52999 * 109.46922 * 304.99925 * 4 2 1 7 7 N 1.46501 * 109.47224 * 174.99930 * 6 4 2 8 8 C 1.34774 * 120.00166 * 180.02562 * 7 6 4 9 9 O 1.21277 * 120.00244 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.99696 * 180.02562 * 8 7 6 11 11 H 1.08999 * 107.91055 * 60.00118 * 10 8 7 12 12 C 1.51012 * 108.05583 * 303.39067 * 10 8 7 13 13 C 1.53719 * 110.85223 * 166.10171 * 12 10 8 14 14 C 1.51809 * 106.91372 * 79.06509 * 13 12 10 15 15 N 1.30311 * 127.91201 * 114.40121 * 14 13 12 16 16 N 1.29268 * 107.46384 * 179.97438 * 15 14 13 17 17 N 1.29149 * 109.43125 * 359.97438 * 16 15 14 18 18 N 1.28394 * 108.36133 * 0.02562 * 17 16 15 19 19 C 1.47659 * 127.76013 * 179.97438 * 18 17 16 20 20 C 1.50879 * 108.05277 * 176.60940 * 10 8 7 21 21 N 1.46494 * 109.46915 * 64.99871 * 4 2 1 22 22 C 1.36945 * 119.99612 * 85.00420 * 21 4 2 23 23 H 1.07999 * 120.00077 * 359.97438 * 22 21 4 24 24 C 1.38812 * 119.99637 * 179.97438 * 22 21 4 25 25 N 1.31617 * 120.00227 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99854 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.47118 * 90.00067 * 26 24 22 28 28 H 1.48499 * 109.47293 * 210.00071 * 26 24 22 29 29 H 1.48504 * 109.47104 * 330.00316 * 26 24 22 30 30 H 1.08998 * 109.46775 * 299.99606 * 1 2 3 31 31 H 1.08997 * 109.47144 * 60.00402 * 1 2 3 32 32 H 1.09008 * 109.46481 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46775 * 240.00394 * 2 1 3 34 34 H 1.08995 * 109.46807 * 60.00071 * 3 2 1 35 35 H 1.08999 * 109.46377 * 180.02562 * 3 2 1 36 36 H 1.08997 * 109.47050 * 299.99655 * 3 2 1 37 37 H 1.09000 * 109.47487 * 295.00520 * 6 4 2 38 38 H 1.09005 * 109.47191 * 55.00630 * 6 4 2 39 39 H 0.97006 * 119.99214 * 0.02562 * 7 6 4 40 40 H 1.08996 * 109.19740 * 286.49438 * 12 10 8 41 41 H 1.09004 * 109.19814 * 45.78254 * 12 10 8 42 42 H 1.08996 * 109.99256 * 319.70682 * 13 12 10 43 43 H 1.08999 * 110.03531 * 198.43891 * 13 12 10 44 44 H 1.08997 * 109.91666 * 126.32930 * 19 18 17 45 45 H 1.09005 * 109.98178 * 5.19585 * 19 18 17 46 46 H 1.08994 * 109.12921 * 314.73764 * 20 10 8 47 47 H 1.09003 * 109.12888 * 73.90130 * 20 10 8 48 48 H 0.96995 * 120.00290 * 265.27311 * 21 4 2 49 49 H 0.97005 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 3.1264 -0.6442 1.2951 6 6 1.4301 -0.0762 2.4953 7 7 1.8228 -0.8396 3.6824 8 6 1.3988 -0.4541 4.9022 9 8 0.6918 0.5245 5.0172 10 6 1.8034 -1.2392 6.1234 11 1 2.8915 -1.2246 6.1859 12 6 1.3651 -2.6707 5.9259 13 6 2.0354 -3.5951 6.9550 14 6 1.2709 -3.4348 8.2567 15 7 0.5525 -4.3268 8.8784 16 7 0.0814 -3.7701 9.9457 17 7 0.4894 -2.5464 10.0080 18 7 1.2236 -2.3121 8.9810 19 6 1.9072 -1.0522 8.6267 20 6 1.2557 -0.5304 7.3375 21 7 1.6525 -2.1328 1.1905 22 6 2.4348 -3.0300 0.5134 23 1 3.3371 -2.6968 0.0223 24 6 2.0678 -4.3676 0.4582 25 7 0.9679 -4.7734 1.0562 26 14 3.1344 -5.5913 -0.4661 27 1 4.1458 -6.1637 0.4585 28 1 2.2829 -6.6820 -1.0051 29 1 3.8226 -4.9009 -1.5864 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0278 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 1.6766 1.9564 -0.8900 37 1 1.7896 0.9487 2.5870 38 1 0.3435 -0.0737 2.4082 39 1 2.3881 -1.6226 3.5903 40 1 0.2828 -2.7330 6.0386 41 1 1.6394 -2.9943 4.9218 42 1 3.0759 -3.3030 7.0963 43 1 1.9824 -4.6302 6.6176 44 1 2.9675 -1.2399 8.4575 45 1 1.7826 -0.3229 9.4273 46 1 1.4510 0.5380 7.2457 47 1 0.1792 -0.6933 7.3909 48 1 0.8399 -2.4312 1.6280 49 1 0.7112 -5.7081 1.0173 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319942389.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:39 Heat of formation + Delta-G solvation = 54.997309 kcal Electronic energy + Delta-G solvation = -30223.204592 eV Core-core repulsion = 26221.835655 eV Total energy + Delta-G solvation = -4001.368937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.37008 -41.24366 -39.06068 -38.06180 -36.01557 -35.13914 -34.99432 -33.64133 -32.38713 -32.09545 -29.37872 -27.97561 -27.89850 -26.06037 -25.55149 -24.70000 -24.01957 -22.72557 -22.08255 -20.97427 -19.99922 -19.24710 -18.82393 -18.19458 -17.78493 -17.37737 -16.70736 -16.49655 -16.12873 -15.80615 -15.50604 -15.15752 -14.92048 -14.87168 -14.77925 -14.57411 -14.34907 -13.93857 -13.77721 -13.65821 -13.54082 -13.08624 -12.93271 -12.83516 -12.80875 -12.77613 -12.63975 -12.44373 -12.31430 -12.18606 -12.06231 -12.01522 -11.89244 -11.83417 -11.76054 -11.48343 -11.18538 -11.10621 -10.85756 -10.64208 -9.90572 -8.92001 -7.85416 -5.12746 0.26552 1.10022 1.14822 1.52720 1.55891 1.61577 1.67249 2.29185 2.62493 2.92188 3.26855 3.42095 3.46847 3.51344 3.73516 3.92378 3.94601 3.98312 4.03787 4.15875 4.19345 4.26474 4.35229 4.38235 4.41640 4.46072 4.49167 4.56922 4.74762 4.78659 4.80468 4.83822 4.88771 4.92648 4.98601 5.10157 5.11671 5.12541 5.19863 5.26508 5.32135 5.34777 5.52495 5.58811 5.65521 5.71709 6.34899 6.66842 7.30955 7.43885 7.53343 8.16213 8.40833 9.36562 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003470 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.141319 B = 8066.645067 C =10118.857389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.172 3.828 5 H 0.060 0.940 6 C 0.119 3.881 7 N -0.709 5.709 8 C 0.509 3.491 9 O -0.587 6.587 10 C -0.102 4.102 11 H 0.147 0.853 12 C -0.110 4.110 13 C -0.026 4.026 14 C 0.189 3.811 15 N -0.338 5.338 16 N -0.123 5.123 17 N -0.105 5.105 18 N -0.294 5.294 19 C 0.112 3.888 20 C -0.113 4.113 21 N -0.724 5.724 22 C -0.228 4.228 23 H 0.076 0.924 24 C -0.061 4.061 25 N -0.962 5.962 26 Si 0.956 3.044 27 H -0.285 1.285 28 H -0.308 1.308 29 H -0.276 1.276 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.413 0.587 40 H 0.044 0.956 41 H 0.095 0.905 42 H 0.146 0.854 43 H 0.114 0.886 44 H 0.158 0.842 45 H 0.141 0.859 46 H 0.120 0.880 47 H 0.048 0.952 48 H 0.373 0.627 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.839 12.211 9.972 18.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.064 3.936 5 H 0.078 0.922 6 C -0.006 4.006 7 N -0.360 5.360 8 C 0.297 3.703 9 O -0.468 6.468 10 C -0.123 4.123 11 H 0.165 0.835 12 C -0.149 4.149 13 C -0.066 4.066 14 C -0.089 4.089 15 N -0.187 5.187 16 N -0.116 5.116 17 N -0.092 5.092 18 N -0.097 5.097 19 C -0.006 4.006 20 C -0.151 4.151 21 N -0.364 5.364 22 C -0.360 4.360 23 H 0.093 0.907 24 C -0.254 4.254 25 N -0.613 5.613 26 Si 0.788 3.212 27 H -0.212 1.212 28 H -0.236 1.236 29 H -0.201 1.201 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.250 0.750 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.163 0.837 43 H 0.133 0.867 44 H 0.175 0.825 45 H 0.159 0.841 46 H 0.138 0.862 47 H 0.067 0.933 48 H 0.205 0.795 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.665 12.399 11.009 18.267 hybrid contribution 0.103 -1.224 -1.381 1.848 sum 7.768 11.175 9.629 16.671 Atomic orbital electron populations 1.21730 0.96053 1.00416 1.01130 1.21647 0.95782 0.96483 0.99200 1.21824 1.01134 0.94725 1.02040 1.20647 0.97456 0.83801 0.91735 0.92227 1.21659 0.99273 0.95332 0.84331 1.46033 1.52309 1.31823 1.05827 1.21079 0.79304 0.84533 0.85425 1.90668 1.39342 1.29751 1.87030 1.20774 1.05725 0.93869 0.91889 0.83538 1.21315 1.00367 0.92457 1.00777 1.20931 0.99010 1.03645 0.83055 1.26552 0.99936 0.83109 0.99338 1.74893 1.12949 1.27220 1.03671 1.78820 1.19625 0.99295 1.13899 1.78708 1.08316 1.13063 1.09104 1.48984 1.32207 1.14392 1.14140 1.23359 0.98491 0.79782 0.98998 1.21459 1.00042 1.02649 0.90982 1.42527 1.27786 1.02714 1.63347 1.19486 1.03315 0.88721 1.24452 0.90653 1.25269 0.98785 0.98794 1.02588 1.69786 1.26168 1.15256 1.50076 0.85400 0.77958 0.79209 0.78664 1.21220 1.23582 1.20143 0.92591 0.92666 0.95026 0.93084 0.92098 0.92145 0.92371 0.90163 0.93117 0.75018 0.93673 0.88694 0.83664 0.86746 0.82489 0.84074 0.86232 0.93283 0.79473 0.94408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.21 8.60 71.98 0.62 -3.59 16 2 C -0.11 -3.28 2.88 -10.79 -0.03 -3.32 16 3 C -0.14 -3.15 8.95 71.98 0.64 -2.51 16 4 C 0.17 5.47 2.22 44.99 0.10 5.57 16 5 H 0.06 1.85 8.08 -2.39 -0.02 1.83 16 6 C 0.12 3.37 4.54 86.38 0.39 3.76 16 7 N -0.71 -18.16 5.11 -463.06 -2.37 -20.52 16 8 C 0.51 12.34 7.07 87.66 0.62 12.96 16 9 O -0.59 -18.43 15.58 -3.02 -0.05 -18.48 16 10 C -0.10 -1.52 1.96 -12.88 -0.03 -1.54 16 11 H 0.15 0.90 7.68 -2.39 -0.02 0.88 16 12 C -0.11 -2.04 4.89 30.19 0.15 -1.89 16 13 C -0.03 -0.39 6.00 30.44 0.18 -0.21 16 14 C 0.19 4.20 7.10 139.13 0.99 5.19 16 15 N -0.34 -10.38 12.37 -50.66 -0.63 -11.01 16 16 N -0.12 -3.98 13.45 36.91 0.50 -3.49 16 17 N -0.11 -2.84 13.36 37.02 0.49 -2.34 16 18 N -0.29 -5.73 3.36 -335.06 -1.13 -6.85 16 19 C 0.11 0.96 6.73 86.35 0.58 1.54 16 20 C -0.11 -1.55 4.44 30.10 0.13 -1.42 16 21 N -0.72 -29.95 4.01 -322.95 -1.30 -31.25 16 22 C -0.23 -10.78 9.93 84.03 0.83 -9.95 16 23 H 0.08 3.45 7.83 -2.91 -0.02 3.43 16 24 C -0.06 -3.13 5.50 84.86 0.47 -2.67 16 25 N -0.96 -53.31 13.06 21.65 0.28 -53.03 16 26 Si 0.96 42.22 29.55 68.60 2.03 44.25 16 27 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 28 H -0.31 -14.34 7.11 99.48 0.71 -13.63 16 29 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 30 H 0.06 1.62 6.23 -2.39 -0.01 1.60 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.03 1.17 7.75 -2.38 -0.02 1.15 16 33 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.06 1.27 6.68 -2.39 -0.02 1.26 16 35 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 2.06 6.81 -2.39 -0.02 2.04 16 38 H 0.05 1.65 6.06 -2.38 -0.01 1.63 16 39 H 0.41 10.37 7.14 -92.70 -0.66 9.71 16 40 H 0.04 1.12 7.92 -2.39 -0.02 1.10 16 41 H 0.09 2.02 6.80 -2.38 -0.02 2.01 16 42 H 0.15 0.84 7.89 -2.39 -0.02 0.82 16 43 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.16 0.04 7.88 -2.39 -0.02 0.03 16 45 H 0.14 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.12 1.52 7.47 -2.39 -0.02 1.51 16 47 H 0.05 1.03 8.08 -2.39 -0.02 1.01 16 48 H 0.37 17.35 7.80 -92.71 -0.72 16.63 16 49 H 0.25 13.67 8.31 -92.70 -0.77 12.90 16 Total: -1.00 -72.29 387.25 3.09 -69.20 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: -0.40 Total: 31.60 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: 5.65 Total: 1.93 kcal Atomic # 7 Polarization: -124.35 SS G_CDS: -4.14 Total: -128.50 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.48 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -72.29 3.09 -69.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319942389.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.194 kcal (2) G-P(sol) polarization free energy of solvation -72.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds