Wall clock time and date at job start Tue Mar 31 2020 20:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 C 1.52998 * 109.47634 * 239.99674 * 2 1 3 5 5 N 1.46502 * 109.47068 * 119.99449 * 2 1 3 6 6 N 1.28725 * 125.32067 * 239.96010 * 5 2 1 7 7 N 1.28988 * 108.98316 * 179.76361 * 6 5 2 8 8 C 1.34185 * 107.25530 * 0.42924 * 7 6 5 9 9 C 1.48000 * 126.70259 * 179.83753 * 8 7 6 10 10 O 1.21530 * 120.00363 * 179.68860 * 9 8 7 11 11 N 1.34778 * 119.99732 * 359.68978 * 9 8 7 12 12 C 1.46497 * 120.00095 * 179.97438 * 11 9 8 13 13 H 1.08995 * 110.01924 * 33.60925 * 12 11 9 14 14 C 1.53881 * 110.03329 * 272.16479 * 12 11 9 15 15 C 1.54259 * 106.60226 * 240.71679 * 14 12 11 16 16 C 1.55032 * 104.28073 * 23.51626 * 15 14 12 17 17 C 1.54268 * 110.03471 * 155.00116 * 12 11 9 18 18 H 1.08991 * 110.48892 * 214.48569 * 17 12 11 19 19 C 1.53002 * 110.48611 * 336.99958 * 17 12 11 20 20 N 1.46499 * 109.47337 * 183.15950 * 19 17 12 21 21 C 1.36935 * 119.99938 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00083 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99632 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99535 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00484 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47326 * 270.00576 * 25 23 21 27 27 H 1.48506 * 109.46545 * 30.00326 * 25 23 21 28 28 H 1.48498 * 109.47210 * 150.00037 * 25 23 21 29 29 N 1.28865 * 125.31920 * 60.00252 * 5 2 1 30 30 H 1.09005 * 109.47167 * 300.00627 * 1 2 3 31 31 H 1.09005 * 109.47232 * 60.00166 * 1 2 3 32 32 H 1.08993 * 109.47085 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47521 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47305 * 299.99679 * 3 2 1 35 35 H 1.08995 * 109.47429 * 59.99718 * 3 2 1 36 36 H 1.09001 * 109.46545 * 300.00312 * 4 2 1 37 37 H 1.09005 * 109.46680 * 59.99822 * 4 2 1 38 38 H 1.08993 * 109.47418 * 180.02562 * 4 2 1 39 39 H 0.97000 * 120.00179 * 0.02562 * 11 9 8 40 40 H 1.09001 * 110.02956 * 0.02562 * 14 12 11 41 41 H 1.09001 * 110.03016 * 121.38176 * 14 12 11 42 42 H 1.08997 * 110.49117 * 142.29135 * 15 14 12 43 43 H 1.09007 * 110.48609 * 264.93548 * 15 14 12 44 44 H 1.09004 * 110.87557 * 203.90283 * 16 15 14 45 45 H 1.08997 * 110.69582 * 80.49021 * 16 15 14 46 46 H 1.08993 * 109.47262 * 63.15267 * 19 17 12 47 47 H 1.09005 * 109.46767 * 303.15882 * 19 17 12 48 48 H 0.96999 * 119.99984 * 0.02562 * 20 19 17 49 49 H 0.97005 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 7 2.7621 -0.1662 2.1067 7 7 2.9993 -1.0504 3.0153 8 6 2.3784 -2.1802 2.6430 9 6 2.3709 -3.4674 3.3735 10 8 1.7597 -4.4172 2.9248 11 7 3.0420 -3.5862 4.5363 12 6 3.0341 -4.8601 5.2596 13 1 3.0018 -5.6899 4.5537 14 6 1.8209 -4.9226 6.2041 15 6 2.3821 -5.0692 7.6335 16 6 3.8171 -4.4895 7.5422 17 6 4.2903 -4.9710 6.1482 18 1 4.6327 -6.0046 6.1976 19 6 5.4030 -4.0645 5.6180 20 7 6.6080 -4.2432 6.4318 21 6 7.7411 -3.5307 6.1430 22 1 7.7467 -2.8373 5.3150 23 6 8.8830 -3.7005 6.9138 24 7 9.9720 -3.0152 6.6365 25 14 8.8737 -4.9003 8.3455 26 1 8.4461 -4.1946 9.5800 27 1 7.9286 -6.0087 8.0562 28 1 10.2390 -5.4517 8.5381 29 7 1.7710 -1.9179 1.5011 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 -1.7489 -1.2490 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 3.5295 -2.8280 4.8946 40 1 1.2377 -4.0052 6.1238 41 1 1.1988 -5.7827 5.9563 42 1 1.7822 -4.4952 8.3396 43 1 2.4149 -6.1192 7.9246 44 1 4.4519 -4.8986 8.3282 45 1 3.7963 -3.4007 7.5884 46 1 5.0803 -3.0247 5.6700 47 1 5.6219 -4.3255 4.5825 48 1 6.6034 -4.8668 7.1748 49 1 10.7699 -3.1336 7.1754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320131787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:56 Heat of formation + Delta-G solvation = 100.441967 kcal Electronic energy + Delta-G solvation = -29591.517025 eV Core-core repulsion = 25592.118717 eV Total energy + Delta-G solvation = -3999.398309 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.57850 -40.15591 -38.22595 -37.82355 -34.57170 -33.92911 -33.46323 -32.51111 -31.54297 -29.06118 -28.30030 -28.10524 -27.89584 -25.31225 -24.68273 -24.46235 -22.02345 -21.35037 -20.94450 -20.40308 -19.39241 -18.33835 -17.56599 -17.54608 -17.00243 -16.15986 -15.17645 -15.07056 -14.91517 -14.69778 -14.63848 -14.32680 -14.16451 -13.92889 -13.75708 -13.42834 -13.22403 -13.05003 -12.89869 -12.63883 -12.44797 -12.39850 -12.38549 -12.04932 -11.81723 -11.67023 -11.53728 -11.21065 -11.15164 -11.00548 -10.97021 -10.89858 -10.53955 -10.52741 -10.46587 -10.40161 -10.31858 -10.05013 -9.55853 -9.10863 -8.86910 -7.20778 -5.73712 -3.09303 0.87128 1.36820 1.44717 2.75617 3.04822 3.39180 3.41448 3.47068 3.67774 3.91526 3.97308 4.08372 4.39888 4.55332 4.61688 4.70104 4.87326 4.88274 4.90455 4.96052 5.05371 5.09917 5.12241 5.12606 5.30345 5.39190 5.46221 5.47541 5.54159 5.56135 5.58424 5.65759 5.68338 5.74291 5.80561 5.86587 5.91456 5.98002 5.98977 6.17006 6.36556 6.42434 6.49911 6.66345 6.71912 7.35951 7.95140 8.02836 8.11923 8.45137 9.24238 9.96245 10.16002 11.44770 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.002888 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.380992 B = 9692.584941 C =11376.418367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.176 3.824 3 C -0.154 4.154 4 C -0.161 4.161 5 N -0.127 5.127 6 N -0.053 5.053 7 N -0.250 5.250 8 C 0.126 3.874 9 C 0.618 3.382 10 O -0.515 6.515 11 N -0.694 5.694 12 C 0.150 3.850 13 H 0.096 0.904 14 C -0.132 4.132 15 C -0.124 4.124 16 C -0.117 4.117 17 C -0.112 4.112 18 H 0.090 0.910 19 C 0.166 3.834 20 N -0.752 5.752 21 C -0.243 4.243 22 H 0.090 0.910 23 C 0.004 3.996 24 N -0.934 5.934 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.277 1.277 28 H -0.292 1.292 29 N -0.247 5.247 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.416 0.584 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.070 0.930 45 H 0.072 0.928 46 H 0.027 0.973 47 H 0.028 0.972 48 H 0.361 0.639 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.227 5.152 -12.063 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.096 3.904 3 C -0.212 4.212 4 C -0.220 4.220 5 N -0.041 5.041 6 N -0.046 5.046 7 N -0.124 5.124 8 C -0.158 4.158 9 C 0.398 3.602 10 O -0.387 6.387 11 N -0.348 5.348 12 C 0.046 3.954 13 H 0.114 0.886 14 C -0.171 4.171 15 C -0.162 4.162 16 C -0.155 4.155 17 C -0.131 4.131 18 H 0.109 0.891 19 C 0.038 3.962 20 N -0.398 5.398 21 C -0.372 4.372 22 H 0.108 0.892 23 C -0.192 4.192 24 N -0.582 5.582 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.203 1.203 28 H -0.218 1.218 29 N -0.100 5.100 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.255 0.745 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.046 0.954 48 H 0.194 0.806 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.375 5.220 -12.632 27.078 hybrid contribution 0.365 -0.860 1.241 1.553 sum -23.010 4.361 -11.391 26.043 Atomic orbital electron populations 1.22256 0.90641 1.04734 1.04176 1.21518 0.96301 0.93178 0.79402 1.22119 1.03473 0.91207 1.04419 1.22269 1.02729 1.02066 0.94888 1.50763 1.29737 1.05413 1.18215 1.78931 1.08250 1.22003 0.95366 1.76218 1.18936 0.98077 1.19199 1.25323 0.99778 0.97277 0.93442 1.16102 0.80102 0.83252 0.80781 1.90824 1.43053 1.37436 1.67423 1.46028 1.51162 1.16149 1.21446 1.21734 0.95079 0.85193 0.93412 0.88638 1.22591 0.97225 1.02492 0.94795 1.22401 0.96665 1.01064 0.96074 1.22592 0.95085 1.01184 0.96609 1.22549 0.94061 1.01715 0.94758 0.89138 1.20587 0.85540 0.95676 0.94398 1.42664 1.09932 1.50994 1.36196 1.19066 0.88085 1.17367 1.12725 0.89214 1.24671 0.95788 0.99559 0.99161 1.69710 1.02297 1.44443 1.41799 0.86547 0.76786 0.81584 0.83623 1.21063 1.20321 1.21805 1.74950 1.21008 0.98917 1.15137 0.91292 0.88958 0.90256 0.90301 0.89085 0.90452 0.90235 0.88959 0.91108 0.74487 0.91279 0.91048 0.91672 0.91572 0.91107 0.90881 0.95500 0.95368 0.80608 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.84 8.66 37.15 0.32 -0.52 16 2 C 0.18 1.23 1.30 -131.82 -0.17 1.06 16 3 C -0.15 -0.81 7.90 37.16 0.29 -0.51 16 4 C -0.16 -0.93 8.66 37.16 0.32 -0.61 16 5 N -0.13 -1.47 3.72 0.52 0.00 -1.46 16 6 N -0.05 -0.72 12.21 60.35 0.74 0.02 16 7 N -0.25 -3.82 12.26 32.10 0.39 -3.43 16 8 C 0.13 1.91 8.14 -156.25 -1.27 0.64 16 9 C 0.62 9.59 7.83 -12.26 -0.10 9.49 16 10 O -0.52 -9.01 16.75 5.34 0.09 -8.92 16 11 N -0.69 -9.83 4.34 -53.61 -0.23 -10.06 16 12 C 0.15 2.01 3.12 -66.81 -0.21 1.80 16 13 H 0.10 1.32 7.56 -51.93 -0.39 0.93 16 14 C -0.13 -1.52 6.59 -25.61 -0.17 -1.69 16 15 C -0.12 -1.36 6.83 -25.00 -0.17 -1.53 16 16 C -0.12 -1.58 6.11 -24.66 -0.15 -1.73 16 17 C -0.11 -1.65 2.86 -88.96 -0.25 -1.90 16 18 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 19 C 0.17 3.14 4.80 -4.04 -0.02 3.12 16 20 N -0.75 -17.72 5.27 -59.91 -0.32 -18.04 16 21 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 22 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 23 C 0.00 0.11 5.50 -17.43 -0.10 0.02 16 24 N -0.93 -29.67 13.97 55.49 0.78 -28.89 16 25 Si 0.88 22.17 27.74 -169.99 -4.71 17.45 16 26 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 28 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 29 N -0.25 -3.43 11.85 32.11 0.38 -3.05 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.42 5.93 6.27 -40.82 -0.26 5.68 16 40 H 0.07 0.81 7.92 -51.93 -0.41 0.40 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.07 1.03 8.00 -51.93 -0.42 0.61 16 46 H 0.03 0.51 6.34 -51.93 -0.33 0.18 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.36 8.25 5.44 -40.82 -0.22 8.02 16 49 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 397.63 15.07 5.99 5.99 Total: -1.00 -35.09 397.63 -6.68 -41.77 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -7.96 Total: 8.07 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.83 Total: 0.55 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: 1.74 Total: -64.91 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.09 -6.68 -41.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320131787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.212 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds