Wall clock time and date at job start Tue Mar 31 2020 20:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 109.47175 * 2 1 4 4 C 1.52998 * 109.47634 * 239.99674 * 2 1 3 5 5 N 1.46502 * 109.47068 * 119.99449 * 2 1 3 6 6 N 1.28725 * 125.32067 * 239.96010 * 5 2 1 7 7 N 1.28988 * 108.98316 * 179.76361 * 6 5 2 8 8 C 1.34185 * 107.25530 * 0.42924 * 7 6 5 9 9 C 1.48000 * 126.70259 * 179.83753 * 8 7 6 10 10 O 1.21530 * 120.00363 * 179.68860 * 9 8 7 11 11 N 1.34778 * 119.99732 * 359.68978 * 9 8 7 12 12 C 1.46497 * 120.00095 * 179.97438 * 11 9 8 13 13 H 1.08995 * 110.01924 * 33.60925 * 12 11 9 14 14 C 1.53881 * 110.03329 * 272.16479 * 12 11 9 15 15 C 1.54259 * 106.60226 * 240.71679 * 14 12 11 16 16 C 1.55032 * 104.28073 * 23.51626 * 15 14 12 17 17 C 1.54268 * 110.03471 * 155.00116 * 12 11 9 18 18 H 1.08991 * 110.48892 * 214.48569 * 17 12 11 19 19 C 1.53002 * 110.48611 * 336.99958 * 17 12 11 20 20 N 1.46499 * 109.47337 * 183.15950 * 19 17 12 21 21 C 1.36935 * 119.99938 * 179.97438 * 20 19 17 22 22 H 1.07999 * 120.00083 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99632 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99535 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00484 * 359.97438 * 23 21 20 26 26 H 1.48493 * 109.47326 * 270.00576 * 25 23 21 27 27 H 1.48506 * 109.46545 * 30.00326 * 25 23 21 28 28 H 1.48498 * 109.47210 * 150.00037 * 25 23 21 29 29 N 1.28865 * 125.31920 * 60.00252 * 5 2 1 30 30 H 1.09005 * 109.47167 * 300.00627 * 1 2 3 31 31 H 1.09005 * 109.47232 * 60.00166 * 1 2 3 32 32 H 1.08993 * 109.47085 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47521 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.47305 * 299.99679 * 3 2 1 35 35 H 1.08995 * 109.47429 * 59.99718 * 3 2 1 36 36 H 1.09001 * 109.46545 * 300.00312 * 4 2 1 37 37 H 1.09005 * 109.46680 * 59.99822 * 4 2 1 38 38 H 1.08993 * 109.47418 * 180.02562 * 4 2 1 39 39 H 0.97000 * 120.00179 * 0.02562 * 11 9 8 40 40 H 1.09001 * 110.02956 * 0.02562 * 14 12 11 41 41 H 1.09001 * 110.03016 * 121.38176 * 14 12 11 42 42 H 1.08997 * 110.49117 * 142.29135 * 15 14 12 43 43 H 1.09007 * 110.48609 * 264.93548 * 15 14 12 44 44 H 1.09004 * 110.87557 * 203.90283 * 16 15 14 45 45 H 1.08997 * 110.69582 * 80.49021 * 16 15 14 46 46 H 1.08993 * 109.47262 * 63.15267 * 19 17 12 47 47 H 1.09005 * 109.46767 * 303.15882 * 19 17 12 48 48 H 0.96999 * 119.99984 * 0.02562 * 20 19 17 49 49 H 0.97005 * 119.99717 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0183 -0.6905 1.1963 6 7 2.7621 -0.1662 2.1067 7 7 2.9993 -1.0504 3.0153 8 6 2.3784 -2.1802 2.6430 9 6 2.3709 -3.4674 3.3735 10 8 1.7597 -4.4172 2.9248 11 7 3.0420 -3.5862 4.5363 12 6 3.0341 -4.8601 5.2596 13 1 3.0018 -5.6899 4.5537 14 6 1.8209 -4.9226 6.2041 15 6 2.3821 -5.0692 7.6335 16 6 3.8171 -4.4895 7.5422 17 6 4.2903 -4.9710 6.1482 18 1 4.6327 -6.0046 6.1976 19 6 5.4030 -4.0645 5.6180 20 7 6.6080 -4.2432 6.4318 21 6 7.7411 -3.5307 6.1430 22 1 7.7467 -2.8373 5.3150 23 6 8.8830 -3.7005 6.9138 24 7 9.9720 -3.0152 6.6365 25 14 8.8737 -4.9003 8.3455 26 1 8.4461 -4.1946 9.5800 27 1 7.9286 -6.0087 8.0562 28 1 10.2390 -5.4517 8.5381 29 7 1.7710 -1.9179 1.5011 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 3.1300 1.4426 0.0005 34 1 1.6767 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 -1.7489 -1.2490 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7217 -1.2489 39 1 3.5295 -2.8280 4.8946 40 1 1.2377 -4.0052 6.1238 41 1 1.1988 -5.7827 5.9563 42 1 1.7822 -4.4952 8.3396 43 1 2.4149 -6.1192 7.9246 44 1 4.4519 -4.8986 8.3282 45 1 3.7963 -3.4007 7.5884 46 1 5.0803 -3.0247 5.6700 47 1 5.6219 -4.3255 4.5825 48 1 6.6034 -4.8668 7.1748 49 1 10.7699 -3.1336 7.1754 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320131787.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:55 Heat of formation + Delta-G solvation = 75.441327 kcal Electronic energy + Delta-G solvation = -29592.601135 eV Core-core repulsion = 25592.118717 eV Total energy + Delta-G solvation = -4000.482418 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.62743 -41.34827 -39.32708 -38.61243 -36.42389 -35.01507 -34.57688 -33.58525 -33.47807 -30.61337 -29.20725 -28.55113 -28.53658 -26.56827 -25.95970 -25.64720 -23.84815 -22.51808 -21.79005 -21.41536 -20.75440 -19.75156 -19.16849 -18.58063 -17.79477 -17.38153 -16.64001 -16.34156 -16.02816 -16.01830 -15.57925 -15.28363 -15.20198 -15.14972 -15.01462 -14.74589 -14.56501 -14.05806 -13.75215 -13.54902 -13.49564 -13.29154 -13.24402 -12.90732 -12.86490 -12.74164 -12.65619 -12.39172 -12.31112 -12.13774 -12.12852 -12.09099 -11.99135 -11.84614 -11.74513 -11.59768 -11.55736 -11.50145 -11.41968 -10.95407 -10.27220 -9.29960 -8.01909 -5.36057 -0.19680 0.22273 0.62723 1.38655 1.43327 1.50435 1.65738 1.84333 2.49690 2.76383 2.91433 3.29116 3.32730 3.47077 3.55269 3.62396 3.63636 3.79103 3.96874 4.00356 4.26860 4.36968 4.39593 4.45141 4.50004 4.51267 4.52871 4.57889 4.59136 4.61489 4.70822 4.71402 4.77489 4.81058 5.00434 5.02018 5.09130 5.09646 5.15973 5.16658 5.20254 5.25790 5.31252 5.43012 5.51370 5.75813 6.15412 6.21590 6.76322 7.01395 7.08597 7.83122 8.04603 9.19863 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.002888 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.380992 B = 9692.584941 C =11376.418367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.158 3.842 3 C -0.151 4.151 4 C -0.158 4.158 5 N -0.108 5.108 6 N -0.061 5.061 7 N -0.273 5.273 8 C 0.110 3.890 9 C 0.620 3.380 10 O -0.538 6.538 11 N -0.689 5.689 12 C 0.151 3.849 13 H 0.092 0.908 14 C -0.126 4.126 15 C -0.112 4.112 16 C -0.119 4.119 17 C -0.103 4.103 18 H 0.099 0.901 19 C 0.165 3.835 20 N -0.751 5.751 21 C -0.236 4.236 22 H 0.051 0.949 23 C -0.065 4.065 24 N -0.986 5.986 25 Si 0.958 3.042 26 H -0.274 1.274 27 H -0.248 1.248 28 H -0.297 1.297 29 N -0.254 5.254 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.131 0.869 38 H 0.057 0.943 39 H 0.415 0.585 40 H 0.067 0.933 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.027 0.973 47 H 0.013 0.987 48 H 0.369 0.631 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.656 4.470 -11.791 28.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.080 3.920 3 C -0.209 4.209 4 C -0.216 4.216 5 N -0.025 5.025 6 N -0.053 5.053 7 N -0.147 5.147 8 C -0.174 4.174 9 C 0.400 3.600 10 O -0.413 6.413 11 N -0.342 5.342 12 C 0.047 3.953 13 H 0.111 0.889 14 C -0.164 4.164 15 C -0.149 4.149 16 C -0.156 4.156 17 C -0.122 4.122 18 H 0.117 0.883 19 C 0.038 3.962 20 N -0.397 5.397 21 C -0.367 4.367 22 H 0.069 0.931 23 C -0.257 4.257 24 N -0.636 5.636 25 Si 0.785 3.215 26 H -0.200 1.200 27 H -0.172 1.172 28 H -0.224 1.224 29 N -0.108 5.108 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.147 0.853 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.149 0.851 38 H 0.076 0.924 39 H 0.254 0.746 40 H 0.086 0.914 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.045 0.955 47 H 0.031 0.969 48 H 0.202 0.798 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -25.851 4.538 -12.358 29.010 hybrid contribution 1.087 -0.501 0.946 1.526 sum -24.763 4.037 -11.412 27.563 Atomic orbital electron populations 1.22300 0.88884 1.04366 1.05781 1.22254 0.97703 0.93930 0.78163 1.22188 1.02668 0.90074 1.05984 1.22320 1.01920 1.01708 0.95693 1.51375 1.28006 1.04703 1.18432 1.78851 1.08860 1.21848 0.95734 1.76173 1.19815 0.98415 1.20287 1.25298 1.00679 0.97313 0.94122 1.16141 0.79832 0.83153 0.80831 1.90798 1.44243 1.38179 1.68047 1.46049 1.50578 1.16420 1.21132 1.21817 0.95399 0.84627 0.93445 0.88945 1.22548 0.96233 1.03039 0.94611 1.22347 0.94701 1.02088 0.95809 1.22595 0.96896 1.00822 0.95307 1.22459 0.92858 1.00968 0.95899 0.88327 1.20689 0.85429 0.96858 0.93196 1.42600 1.09788 1.50446 1.36887 1.19007 0.89896 1.16589 1.11191 0.93124 1.25562 0.95242 1.02117 1.02734 1.69908 1.03227 1.46851 1.43626 0.85360 0.77019 0.79633 0.79504 1.20040 1.17191 1.22430 1.74913 1.21084 1.00020 1.14772 0.91871 0.85130 0.91581 0.91613 0.85256 0.91110 0.91602 0.85054 0.92397 0.74640 0.91443 0.89732 0.90192 0.89977 0.91203 0.91750 0.95513 0.96923 0.79760 0.93332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.66 71.98 0.62 -0.71 16 2 C 0.16 2.01 1.30 3.60 0.00 2.02 16 3 C -0.15 -1.33 7.90 71.98 0.57 -0.76 16 4 C -0.16 -1.60 8.66 71.98 0.62 -0.98 16 5 N -0.11 -2.52 3.72 -152.26 -0.57 -3.09 16 6 N -0.06 -1.69 12.21 37.02 0.45 -1.24 16 7 N -0.27 -8.68 12.26 -52.37 -0.64 -9.32 16 8 C 0.11 3.43 8.14 137.15 1.12 4.55 16 9 C 0.62 19.63 7.83 86.83 0.68 20.31 16 10 O -0.54 -19.00 16.75 -3.81 -0.06 -19.07 16 11 N -0.69 -19.67 4.34 -441.82 -1.92 -21.59 16 12 C 0.15 3.89 3.12 45.72 0.14 4.03 16 13 H 0.09 2.47 7.56 -2.39 -0.02 2.46 16 14 C -0.13 -2.61 6.59 31.32 0.21 -2.40 16 15 C -0.11 -2.09 6.83 31.72 0.22 -1.87 16 16 C -0.12 -2.94 6.11 31.94 0.20 -2.75 16 17 C -0.10 -2.89 2.86 -9.72 -0.03 -2.92 16 18 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 19 C 0.16 6.29 4.80 86.38 0.41 6.71 16 20 N -0.75 -35.16 5.27 -343.45 -1.81 -36.97 16 21 C -0.24 -13.77 10.47 84.03 0.88 -12.89 16 22 H 0.05 3.29 8.06 -2.91 -0.02 3.26 16 23 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 24 N -0.99 -64.37 13.97 21.65 0.30 -64.06 16 25 Si 0.96 45.51 27.74 68.60 1.90 47.41 16 26 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 27 H -0.25 -10.44 6.52 99.48 0.65 -9.79 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 29 N -0.25 -7.19 11.85 -52.32 -0.62 -7.81 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.13 0.13 8.14 -2.38 -0.02 0.11 16 32 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.13 0.15 8.14 -2.38 -0.02 0.13 16 35 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.13 0.29 8.14 -2.38 -0.02 0.27 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.41 12.14 6.27 -92.71 -0.58 11.55 16 40 H 0.07 1.45 7.92 -2.39 -0.02 1.43 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.08 1.31 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 45 H 0.06 1.71 8.00 -2.39 -0.02 1.69 16 46 H 0.03 1.04 6.34 -2.39 -0.02 1.03 16 47 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 48 H 0.37 16.12 5.44 -92.71 -0.50 15.61 16 49 H 0.26 15.98 8.31 -92.70 -0.77 15.21 16 Total: -1.00 -78.91 397.63 2.97 -75.94 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: -0.18 Total: 30.91 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 6.11 Total: 8.87 kcal Atomic # 7 Polarization: -139.27 SS G_CDS: -4.80 Total: -144.07 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.06 Total: -19.07 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Total: -78.91 2.97 -75.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320131787.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.383 kcal (2) G-P(sol) polarization free energy of solvation -78.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.942 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds