Wall clock time and date at job start Tue Mar 31 2020 20:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47750 * 2 1 4 4 C 1.53008 * 109.46782 * 239.99922 * 2 1 3 5 5 N 1.46498 * 109.46910 * 120.00416 * 2 1 3 6 6 N 1.28727 * 125.31969 * 239.95004 * 5 2 1 7 7 N 1.28982 * 108.98613 * 179.79610 * 6 5 2 8 8 C 1.34191 * 107.25525 * 0.37929 * 7 6 5 9 9 C 1.47999 * 126.69819 * 179.89392 * 8 7 6 10 10 O 1.21530 * 119.99947 * 179.68600 * 9 8 7 11 11 N 1.34776 * 120.00194 * 359.68210 * 9 8 7 12 12 C 1.46503 * 120.00232 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.05628 * 326.42376 * 12 11 9 14 14 C 1.54224 * 110.08512 * 88.01258 * 12 11 9 15 15 C 1.54264 * 106.63737 * 119.19329 * 14 12 11 16 16 C 1.54892 * 104.19651 * 336.40572 * 15 14 12 17 17 C 1.54266 * 110.03412 * 205.00192 * 12 11 9 18 18 H 1.09002 * 110.48609 * 145.64847 * 17 12 11 19 19 C 1.53004 * 110.48402 * 23.13830 * 17 12 11 20 20 N 1.46500 * 109.46676 * 176.83794 * 19 17 12 21 21 C 1.36933 * 119.99926 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00029 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00149 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00304 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00113 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46822 * 59.99974 * 25 23 21 27 27 H 1.48495 * 109.47149 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47413 * 300.00081 * 25 23 21 29 29 N 1.28873 * 125.32432 * 59.99899 * 5 2 1 30 30 H 1.09008 * 109.46377 * 300.00559 * 1 2 3 31 31 H 1.08997 * 109.47024 * 59.99279 * 1 2 3 32 32 H 1.08992 * 109.47636 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47033 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46874 * 300.00131 * 3 2 1 35 35 H 1.08999 * 109.46919 * 59.99920 * 3 2 1 36 36 H 1.09000 * 109.46735 * 300.00351 * 4 2 1 37 37 H 1.08997 * 109.46689 * 60.00594 * 4 2 1 38 38 H 1.08999 * 109.46590 * 180.02562 * 4 2 1 39 39 H 0.96998 * 119.99897 * 0.02562 * 11 9 8 40 40 H 1.09009 * 110.00234 * 359.90555 * 14 12 11 41 41 H 1.08999 * 110.02130 * 238.49976 * 14 12 11 42 42 H 1.08993 * 110.49070 * 217.72395 * 15 14 12 43 43 H 1.09006 * 110.48110 * 95.07788 * 15 14 12 44 44 H 1.09000 * 110.75513 * 279.62815 * 16 15 14 45 45 H 1.09002 * 110.91731 * 156.32611 * 16 15 14 46 46 H 1.08992 * 109.46942 * 296.83563 * 19 17 12 47 47 H 1.08994 * 109.47049 * 56.84187 * 19 17 12 48 48 H 0.97002 * 120.00161 * 0.02562 * 20 19 17 49 49 H 0.97001 * 120.00335 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 2.7622 -0.1666 2.1066 7 7 3.0000 -1.0511 3.0148 8 6 2.3783 -2.1806 2.6427 9 6 2.3702 -3.4676 3.3736 10 8 1.7584 -4.4171 2.9252 11 7 3.0414 -3.5866 4.5362 12 6 3.0329 -4.8603 5.2600 13 1 2.0754 -5.3625 5.1216 14 6 4.1816 -5.7605 4.7613 15 6 5.0921 -6.0289 5.9773 16 6 4.8132 -4.8402 6.9304 17 6 3.2898 -4.6168 6.7614 18 1 2.7301 -5.3313 7.3651 19 6 2.9131 -3.1839 7.1436 20 7 3.0941 -2.9996 8.5857 21 6 2.8167 -1.7885 9.1612 22 1 2.4650 -0.9690 8.5520 23 6 2.9887 -1.6137 10.5275 24 7 3.4188 -2.6118 11.2698 25 14 2.6109 0.0388 11.3126 26 1 1.1841 0.3808 11.0839 27 1 2.8740 -0.0350 12.7722 28 1 3.4739 1.0840 10.7058 29 7 1.7710 -1.9182 1.5009 30 1 -0.3632 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6769 1.9563 0.8900 36 1 1.6765 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2491 39 1 3.5294 -2.8286 4.8942 40 1 4.7436 -5.2491 3.9797 41 1 3.7811 -6.6998 4.3801 42 1 6.1393 -6.0380 5.6752 43 1 4.8234 -6.9715 6.4543 44 1 5.3701 -3.9565 6.6190 45 1 5.0531 -5.1030 7.9607 46 1 3.5521 -2.4843 6.6049 47 1 1.8712 -3.0001 6.8818 48 1 3.4104 -3.7355 9.1328 49 1 3.5393 -2.4896 12.2245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320131799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:05 Heat of formation + Delta-G solvation = 96.159254 kcal Electronic energy + Delta-G solvation = -29542.446170 eV Core-core repulsion = 25542.862149 eV Total energy + Delta-G solvation = -3999.584021 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.58278 -40.07864 -38.17626 -37.77843 -34.37956 -33.89973 -33.43648 -32.50191 -31.38549 -28.59438 -28.26718 -28.11708 -27.83118 -25.24827 -24.67295 -24.36637 -22.30109 -21.34325 -20.94235 -20.29683 -19.20764 -18.30155 -17.57082 -17.19821 -16.87713 -16.09271 -15.15135 -14.91911 -14.88174 -14.72245 -14.60468 -14.36878 -14.15802 -13.76764 -13.58159 -13.43696 -13.06951 -13.04314 -12.91358 -12.80158 -12.40663 -12.40023 -12.29855 -12.05835 -11.68163 -11.56962 -11.26271 -11.19435 -11.16204 -10.85766 -10.83820 -10.76294 -10.53451 -10.49884 -10.34203 -10.30462 -10.26435 -9.96221 -9.64331 -9.04310 -8.82925 -6.88566 -5.72885 -3.01157 0.86998 1.36993 1.44202 2.78666 3.07232 3.47587 3.51606 3.52841 3.66938 3.93669 3.95923 4.07104 4.40914 4.58683 4.73883 4.81893 4.86541 4.87053 4.88999 5.04200 5.07935 5.09392 5.10746 5.13075 5.37858 5.45598 5.47803 5.52742 5.56764 5.65135 5.67502 5.68301 5.78923 5.87228 5.90714 5.94449 6.06695 6.09691 6.25156 6.30134 6.55015 6.57944 6.59179 6.78829 6.85495 7.40987 7.74273 7.98103 8.12827 8.46121 9.57553 10.14748 10.49918 11.49932 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.003033 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.101251 B = 9229.920436 C =11416.783989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.176 3.824 3 C -0.154 4.154 4 C -0.160 4.160 5 N -0.127 5.127 6 N -0.054 5.054 7 N -0.251 5.251 8 C 0.127 3.873 9 C 0.616 3.384 10 O -0.516 6.516 11 N -0.692 5.692 12 C 0.149 3.851 13 H 0.094 0.906 14 C -0.132 4.132 15 C -0.125 4.125 16 C -0.114 4.114 17 C -0.107 4.107 18 H 0.091 0.909 19 C 0.162 3.838 20 N -0.728 5.728 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.286 1.286 29 N -0.247 5.247 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.415 0.585 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.018 0.982 47 H 0.020 0.980 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.210 1.643 -26.575 26.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 C -0.212 4.212 4 C -0.218 4.218 5 N -0.042 5.042 6 N -0.047 5.047 7 N -0.125 5.125 8 C -0.157 4.157 9 C 0.396 3.604 10 O -0.388 6.388 11 N -0.346 5.346 12 C 0.044 3.956 13 H 0.112 0.888 14 C -0.171 4.171 15 C -0.162 4.162 16 C -0.151 4.151 17 C -0.126 4.126 18 H 0.109 0.891 19 C 0.034 3.966 20 N -0.373 5.373 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 N -0.100 5.100 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.255 0.745 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.094 0.906 46 H 0.036 0.964 47 H 0.038 0.962 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.571 1.723 -26.986 27.087 hybrid contribution -0.017 0.686 0.936 1.161 sum -1.589 2.410 -26.051 26.210 Atomic orbital electron populations 1.22267 0.90570 1.04822 1.04275 1.21516 0.96416 0.93127 0.79343 1.22115 1.03269 0.91281 1.04524 1.22259 1.02498 1.02111 0.94954 1.50760 1.29824 1.05426 1.18165 1.78918 1.08383 1.21988 0.95397 1.76213 1.19437 0.98007 1.18854 1.25362 0.99741 0.97281 0.93315 1.16117 0.80071 0.83168 0.81053 1.90823 1.43203 1.37610 1.67155 1.46040 1.51090 1.16285 1.21170 1.21841 0.99932 0.82728 0.91080 0.88750 1.22648 0.96457 0.99587 0.98374 1.22381 0.98994 0.99064 0.95791 1.22522 0.94984 0.97667 0.99938 1.22497 0.97382 0.99825 0.92910 0.89097 1.20601 0.97260 0.91549 0.87203 1.42305 1.80354 1.12994 1.01602 1.19187 1.36869 0.89785 0.91119 0.91277 1.24716 1.02276 0.97598 0.96315 1.69644 1.52609 1.30560 1.05461 0.86280 0.78051 0.83689 0.78262 1.21341 1.21727 1.21230 1.74956 1.20766 0.98942 1.15341 0.91158 0.88963 0.90209 0.90449 0.89097 0.90355 0.90233 0.88968 0.91282 0.74546 0.91447 0.91155 0.91816 0.91536 0.91293 0.90630 0.96405 0.96247 0.78179 0.93512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 8.66 37.16 0.32 -0.60 16 2 C 0.18 1.22 1.30 -131.82 -0.17 1.05 16 3 C -0.15 -0.79 7.90 37.16 0.29 -0.49 16 4 C -0.16 -0.84 8.66 37.16 0.32 -0.52 16 5 N -0.13 -1.47 3.72 0.53 0.00 -1.46 16 6 N -0.05 -0.73 12.21 60.35 0.74 0.01 16 7 N -0.25 -3.83 12.26 32.10 0.39 -3.44 16 8 C 0.13 1.95 8.14 -156.25 -1.27 0.68 16 9 C 0.62 9.78 7.83 -12.26 -0.10 9.69 16 10 O -0.52 -9.22 16.75 5.34 0.09 -9.13 16 11 N -0.69 -10.18 4.35 -53.44 -0.23 -10.41 16 12 C 0.15 2.11 3.13 -66.63 -0.21 1.90 16 13 H 0.09 1.39 7.57 -51.93 -0.39 0.99 16 14 C -0.13 -1.63 6.61 -25.43 -0.17 -1.80 16 15 C -0.12 -1.49 6.83 -25.07 -0.17 -1.67 16 16 C -0.11 -1.68 6.10 -24.74 -0.15 -1.83 16 17 C -0.11 -1.70 2.86 -88.96 -0.25 -1.95 16 18 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 19 C 0.16 3.23 4.80 -4.04 -0.02 3.21 16 20 N -0.73 -18.32 5.47 -59.91 -0.33 -18.65 16 21 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 25 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 N -0.25 -3.45 11.85 32.11 0.38 -3.06 16 30 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 38 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.42 6.15 6.27 -40.82 -0.26 5.89 16 40 H 0.07 0.84 7.92 -51.92 -0.41 0.43 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 1.06 8.00 -51.93 -0.42 0.65 16 45 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.02 0.36 6.34 -51.93 -0.33 0.03 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.38 10.08 7.58 -40.82 -0.31 9.77 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -33.99 400.78 -7.04 -41.02 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -8.00 Total: 8.67 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.82 Total: 0.31 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: 1.68 Total: -64.60 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.99 -7.04 -41.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320131799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.182 kcal (2) G-P(sol) polarization free energy of solvation -33.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds