Wall clock time and date at job start Tue Mar 31 2020 20:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47750 * 2 1 4 4 C 1.53008 * 109.46782 * 239.99922 * 2 1 3 5 5 N 1.46498 * 109.46910 * 120.00416 * 2 1 3 6 6 N 1.28727 * 125.31969 * 239.95004 * 5 2 1 7 7 N 1.28982 * 108.98613 * 179.79610 * 6 5 2 8 8 C 1.34191 * 107.25525 * 0.37929 * 7 6 5 9 9 C 1.47999 * 126.69819 * 179.89392 * 8 7 6 10 10 O 1.21530 * 119.99947 * 179.68600 * 9 8 7 11 11 N 1.34776 * 120.00194 * 359.68210 * 9 8 7 12 12 C 1.46503 * 120.00232 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.05628 * 326.42376 * 12 11 9 14 14 C 1.54224 * 110.08512 * 88.01258 * 12 11 9 15 15 C 1.54264 * 106.63737 * 119.19329 * 14 12 11 16 16 C 1.54892 * 104.19651 * 336.40572 * 15 14 12 17 17 C 1.54266 * 110.03412 * 205.00192 * 12 11 9 18 18 H 1.09002 * 110.48609 * 145.64847 * 17 12 11 19 19 C 1.53004 * 110.48402 * 23.13830 * 17 12 11 20 20 N 1.46500 * 109.46676 * 176.83794 * 19 17 12 21 21 C 1.36933 * 119.99926 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00029 * 359.97438 * 21 20 19 23 23 C 1.38811 * 120.00149 * 180.02562 * 21 20 19 24 24 N 1.31616 * 120.00304 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00113 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.46822 * 59.99974 * 25 23 21 27 27 H 1.48495 * 109.47149 * 179.97438 * 25 23 21 28 28 H 1.48502 * 109.47413 * 300.00081 * 25 23 21 29 29 N 1.28873 * 125.32432 * 59.99899 * 5 2 1 30 30 H 1.09008 * 109.46377 * 300.00559 * 1 2 3 31 31 H 1.08997 * 109.47024 * 59.99279 * 1 2 3 32 32 H 1.08992 * 109.47636 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47033 * 180.02562 * 3 2 1 34 34 H 1.09004 * 109.46874 * 300.00131 * 3 2 1 35 35 H 1.08999 * 109.46919 * 59.99920 * 3 2 1 36 36 H 1.09000 * 109.46735 * 300.00351 * 4 2 1 37 37 H 1.08997 * 109.46689 * 60.00594 * 4 2 1 38 38 H 1.08999 * 109.46590 * 180.02562 * 4 2 1 39 39 H 0.96998 * 119.99897 * 0.02562 * 11 9 8 40 40 H 1.09009 * 110.00234 * 359.90555 * 14 12 11 41 41 H 1.08999 * 110.02130 * 238.49976 * 14 12 11 42 42 H 1.08993 * 110.49070 * 217.72395 * 15 14 12 43 43 H 1.09006 * 110.48110 * 95.07788 * 15 14 12 44 44 H 1.09000 * 110.75513 * 279.62815 * 16 15 14 45 45 H 1.09002 * 110.91731 * 156.32611 * 16 15 14 46 46 H 1.08992 * 109.46942 * 296.83563 * 19 17 12 47 47 H 1.08994 * 109.47049 * 56.84187 * 19 17 12 48 48 H 0.97002 * 120.00161 * 0.02562 * 20 19 17 49 49 H 0.97001 * 120.00335 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 7 2.0183 -0.6907 1.1961 6 7 2.7622 -0.1666 2.1066 7 7 3.0000 -1.0511 3.0148 8 6 2.3783 -2.1806 2.6427 9 6 2.3702 -3.4676 3.3736 10 8 1.7584 -4.4171 2.9252 11 7 3.0414 -3.5866 4.5362 12 6 3.0329 -4.8603 5.2600 13 1 2.0754 -5.3625 5.1216 14 6 4.1816 -5.7605 4.7613 15 6 5.0921 -6.0289 5.9773 16 6 4.8132 -4.8402 6.9304 17 6 3.2898 -4.6168 6.7614 18 1 2.7301 -5.3313 7.3651 19 6 2.9131 -3.1839 7.1436 20 7 3.0941 -2.9996 8.5857 21 6 2.8167 -1.7885 9.1612 22 1 2.4650 -0.9690 8.5520 23 6 2.9887 -1.6137 10.5275 24 7 3.4188 -2.6118 11.2698 25 14 2.6109 0.0388 11.3126 26 1 1.1841 0.3808 11.0839 27 1 2.8740 -0.0350 12.7722 28 1 3.4739 1.0840 10.7058 29 7 1.7710 -1.9182 1.5009 30 1 -0.3632 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4423 -0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6769 1.9563 0.8900 36 1 1.6765 -1.7489 -1.2493 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7217 -1.2491 39 1 3.5294 -2.8286 4.8942 40 1 4.7436 -5.2491 3.9797 41 1 3.7811 -6.6998 4.3801 42 1 6.1393 -6.0380 5.6752 43 1 4.8234 -6.9715 6.4543 44 1 5.3701 -3.9565 6.6190 45 1 5.0531 -5.1030 7.9607 46 1 3.5521 -2.4843 6.6049 47 1 1.8712 -3.0001 6.8818 48 1 3.4104 -3.7355 9.1328 49 1 3.5393 -2.4896 12.2245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320131799.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:04 Heat of formation + Delta-G solvation = 72.846489 kcal Electronic energy + Delta-G solvation = -29543.457088 eV Core-core repulsion = 25542.862149 eV Total energy + Delta-G solvation = -4000.594939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -45.62266 -41.32474 -39.28783 -38.60572 -36.26967 -35.01064 -34.57275 -33.47853 -33.31606 -30.21509 -29.18931 -28.54789 -28.53064 -26.53039 -25.99132 -25.63953 -24.07844 -22.51495 -21.78332 -21.40723 -20.56708 -19.56061 -18.92424 -18.57527 -17.78111 -17.37624 -16.66714 -16.26488 -16.08368 -15.95854 -15.35413 -15.27278 -15.19676 -15.14132 -15.07638 -14.80367 -14.47692 -14.05543 -13.61064 -13.49038 -13.29773 -13.24189 -13.14659 -12.86238 -12.83253 -12.71403 -12.65135 -12.39220 -12.29998 -12.22911 -12.13285 -12.12576 -11.96549 -11.85005 -11.66568 -11.58561 -11.53371 -11.49563 -11.42043 -10.90464 -10.26092 -8.98713 -7.94266 -5.22508 -0.19208 0.22773 0.62962 1.46986 1.49746 1.55883 1.66216 1.84967 2.56002 2.77062 2.92232 3.38001 3.44141 3.47313 3.56210 3.62981 3.65984 3.87401 3.97509 4.18643 4.27485 4.39858 4.40234 4.49065 4.51588 4.52177 4.55991 4.58455 4.59441 4.67350 4.71214 4.71670 4.77903 4.82585 5.00800 5.03499 5.09744 5.09951 5.16380 5.19889 5.20593 5.26705 5.35831 5.44736 5.48916 5.53015 6.16890 6.28206 6.77333 7.01869 7.35092 8.09930 8.34947 9.28807 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010231 B = 0.003033 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2736.101251 B = 9229.920436 C =11416.783989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 C -0.151 4.151 4 C -0.156 4.156 5 N -0.109 5.109 6 N -0.060 5.060 7 N -0.272 5.272 8 C 0.111 3.889 9 C 0.619 3.381 10 O -0.539 6.539 11 N -0.687 5.687 12 C 0.152 3.848 13 H 0.091 0.909 14 C -0.124 4.124 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.099 4.099 18 H 0.089 0.911 19 C 0.164 3.836 20 N -0.738 5.738 21 C -0.247 4.247 22 H 0.070 0.930 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.970 3.030 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.278 1.278 29 N -0.254 5.254 30 H 0.058 0.942 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.130 0.870 38 H 0.062 0.938 39 H 0.415 0.585 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.061 0.939 45 H 0.060 0.940 46 H 0.023 0.977 47 H 0.008 0.992 48 H 0.377 0.623 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 2.470 -28.834 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.080 3.920 3 C -0.209 4.209 4 C -0.214 4.214 5 N -0.025 5.025 6 N -0.052 5.052 7 N -0.146 5.146 8 C -0.173 4.173 9 C 0.400 3.600 10 O -0.414 6.414 11 N -0.340 5.340 12 C 0.048 3.952 13 H 0.109 0.891 14 C -0.163 4.163 15 C -0.150 4.150 16 C -0.150 4.150 17 C -0.118 4.118 18 H 0.107 0.893 19 C 0.037 3.963 20 N -0.381 5.381 21 C -0.379 4.379 22 H 0.088 0.912 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.799 3.201 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.204 1.204 29 N -0.108 5.108 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.148 0.852 38 H 0.081 0.919 39 H 0.254 0.746 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.041 0.959 47 H 0.026 0.974 48 H 0.209 0.791 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.672 2.568 -29.277 29.437 hybrid contribution -0.046 0.504 1.495 1.578 sum -1.718 3.071 -27.782 28.004 Atomic orbital electron populations 1.22318 0.89393 1.04292 1.05624 1.22253 0.97406 0.94051 0.78325 1.22185 1.02877 0.89992 1.05821 1.22305 1.02127 1.01609 0.95351 1.51373 1.28109 1.04673 1.18394 1.78838 1.08938 1.21733 0.95681 1.76169 1.20289 0.98254 1.19891 1.25253 1.00793 0.97236 0.94012 1.16159 0.79617 0.83180 0.81065 1.90799 1.44292 1.38444 1.67828 1.46025 1.50637 1.16445 1.20893 1.21852 1.00823 0.82835 0.89687 0.89054 1.22600 0.95575 0.99647 0.98458 1.22323 0.99930 0.98065 0.94657 1.22465 0.93783 0.98813 0.99906 1.22380 0.98330 0.96949 0.94144 0.89277 1.20686 0.96577 0.94461 0.84550 1.42461 1.80175 1.11912 1.03559 1.19548 1.35931 0.90832 0.91549 0.91181 1.25501 1.02925 1.01021 0.96917 1.69791 1.54092 1.32425 1.05367 0.85268 0.78022 0.79820 0.77002 1.20709 1.21902 1.20387 1.74921 1.20784 1.00114 1.14967 0.92305 0.85091 0.91651 0.91111 0.85308 0.91505 0.91626 0.85160 0.91880 0.74627 0.91262 0.89704 0.90169 0.90268 0.92048 0.92128 0.95917 0.97362 0.79082 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.66 71.98 0.62 -0.88 16 2 C 0.16 1.92 1.30 3.61 0.00 1.92 16 3 C -0.15 -1.21 7.90 71.98 0.57 -0.64 16 4 C -0.16 -1.29 8.66 71.98 0.62 -0.67 16 5 N -0.11 -2.46 3.72 -152.25 -0.57 -3.03 16 6 N -0.06 -1.60 12.21 37.02 0.45 -1.15 16 7 N -0.27 -8.44 12.26 -52.37 -0.64 -9.09 16 8 C 0.11 3.44 8.14 137.15 1.12 4.56 16 9 C 0.62 19.86 7.83 86.83 0.68 20.54 16 10 O -0.54 -19.38 16.75 -3.81 -0.06 -19.44 16 11 N -0.69 -20.29 4.35 -441.26 -1.92 -22.21 16 12 C 0.15 4.24 3.13 45.83 0.14 4.38 16 13 H 0.09 2.64 7.57 -2.39 -0.02 2.62 16 14 C -0.12 -2.85 6.61 31.44 0.21 -2.64 16 15 C -0.11 -2.47 6.83 31.67 0.22 -2.25 16 16 C -0.11 -3.27 6.10 31.89 0.19 -3.07 16 17 C -0.10 -3.14 2.86 -9.72 -0.03 -3.16 16 18 H 0.09 2.88 8.14 -2.39 -0.02 2.87 16 19 C 0.16 6.65 4.80 86.38 0.41 7.07 16 20 N -0.74 -37.82 5.47 -343.46 -1.88 -39.70 16 21 C -0.25 -14.08 9.99 84.03 0.84 -13.24 16 22 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 23 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 24 N -0.97 -59.40 13.06 21.65 0.28 -59.12 16 25 Si 0.97 46.96 29.55 68.60 2.03 48.99 16 26 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 27 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 28 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 29 N -0.25 -7.10 11.85 -52.32 -0.62 -7.72 16 30 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 34 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 38 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.41 12.44 6.27 -92.71 -0.58 11.86 16 40 H 0.07 1.59 7.92 -2.38 -0.02 1.58 16 41 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.06 1.87 8.00 -2.39 -0.02 1.85 16 45 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.02 0.92 6.34 -2.39 -0.02 0.91 16 47 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 48 H 0.38 20.24 7.58 -92.71 -0.70 19.54 16 49 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -74.32 400.78 2.83 -71.49 By element: Atomic # 1 Polarization: 33.06 SS G_CDS: -0.32 Total: 32.74 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 6.07 Total: 8.23 kcal Atomic # 7 Polarization: -137.11 SS G_CDS: -4.89 Total: -142.00 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.06 Total: -19.44 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -74.32 2.83 -71.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320131799.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.336 kcal (2) G-P(sol) polarization free energy of solvation -74.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds