Wall clock time and date at job start Tue Mar 31 2020 20:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47455 * 2 1 4 4 C 1.52999 * 109.46827 * 240.00131 * 2 1 3 5 5 N 1.46497 * 109.47431 * 120.00249 * 2 1 3 6 6 N 1.28724 * 125.31588 * 0.02562 * 5 2 1 7 7 N 1.28983 * 108.98458 * 179.97438 * 6 5 2 8 8 C 1.34185 * 107.25725 * 359.97438 * 7 6 5 9 9 C 1.47999 * 126.70237 * 180.02562 * 8 7 6 10 10 O 1.21537 * 120.00000 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00263 * 359.97438 * 9 8 7 12 12 C 1.46499 * 120.00593 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.66826 * 31.76312 * 12 11 9 14 14 C 1.54885 * 110.75558 * 268.33049 * 12 11 9 15 15 C 1.54267 * 104.19439 * 203.74084 * 14 12 11 16 16 C 1.53875 * 106.59942 * 23.60803 * 15 14 12 17 17 C 1.54265 * 106.59688 * 359.97438 * 16 15 14 18 18 H 1.09010 * 110.59897 * 95.12741 * 17 16 15 19 19 C 1.53000 * 110.48933 * 217.70897 * 17 16 15 20 20 N 1.46498 * 109.47306 * 289.78281 * 19 17 16 21 21 C 1.36938 * 119.99993 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99941 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99975 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00194 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99860 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47261 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47198 * 120.00246 * 25 23 21 28 28 H 1.48504 * 109.46998 * 240.00198 * 25 23 21 29 29 N 1.28864 * 125.32183 * 179.97438 * 5 2 1 30 30 H 1.09001 * 109.47075 * 300.00089 * 1 2 3 31 31 H 1.08999 * 109.47283 * 59.99291 * 1 2 3 32 32 H 1.08996 * 109.47699 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47462 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46996 * 300.00330 * 3 2 1 35 35 H 1.09001 * 109.47051 * 59.99897 * 3 2 1 36 36 H 1.08998 * 109.47509 * 300.00328 * 4 2 1 37 37 H 1.09005 * 109.47384 * 60.00337 * 4 2 1 38 38 H 1.09003 * 109.47530 * 180.02562 * 4 2 1 39 39 H 0.97003 * 119.99444 * 359.97438 * 11 9 8 40 40 H 1.08999 * 110.48697 * 322.41364 * 14 12 11 41 41 H 1.08994 * 110.48911 * 85.06058 * 14 12 11 42 42 H 1.09000 * 110.03154 * 264.32606 * 15 14 12 43 43 H 1.09001 * 110.07265 * 142.91397 * 15 14 12 44 44 H 1.08999 * 110.03476 * 240.71775 * 16 15 14 45 45 H 1.08997 * 110.07781 * 119.30628 * 16 15 14 46 46 H 1.09004 * 109.46613 * 49.77608 * 19 17 16 47 47 H 1.09004 * 109.47583 * 169.77353 * 19 17 16 48 48 H 0.96997 * 120.00421 * 359.97438 * 20 19 17 49 49 H 0.96993 * 120.00353 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2762 -1.2169 2.1067 7 7 2.0308 -1.7403 3.0124 8 6 3.3030 -1.5272 2.6425 9 6 4.5190 -1.9499 3.3726 10 8 5.6182 -1.6912 2.9233 11 7 4.4075 -2.6217 4.5356 12 6 5.6111 -3.0406 5.2580 13 1 6.4221 -2.3299 5.0991 14 6 6.0364 -4.4685 4.8345 15 6 6.8576 -4.9894 6.0320 16 6 6.3987 -4.1869 7.2621 17 6 5.3151 -3.2059 6.7691 18 1 4.3205 -3.6262 6.9186 19 6 5.4410 -1.8623 7.4901 20 7 5.0408 -2.0202 8.8905 21 6 5.0724 -0.9444 9.7371 22 1 5.3926 0.0205 9.3725 23 6 4.6927 -1.0939 11.0639 24 7 4.3019 -2.2696 11.5081 25 14 4.7364 0.3736 12.2189 26 1 5.2096 1.5715 11.4797 27 1 3.3729 0.6259 12.7504 28 1 5.6620 0.0898 13.3450 29 7 3.2581 -0.8670 1.5006 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7217 -1.2492 39 1 3.5301 -2.8278 4.8944 40 1 5.1596 -5.0952 4.6718 41 1 6.6526 -4.4323 3.9362 42 1 7.9207 -4.8261 5.8550 43 1 6.6636 -6.0510 6.1852 44 1 7.2390 -3.6341 7.6821 45 1 5.9814 -4.8583 8.0125 46 1 6.4752 -1.5208 7.4441 47 1 4.7945 -1.1291 7.0079 48 1 4.7536 -2.8868 9.2181 49 1 4.0370 -2.3741 12.4353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320131801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:09 Heat of formation + Delta-G solvation = 89.099367 kcal Electronic energy + Delta-G solvation = -29131.666277 eV Core-core repulsion = 25131.776116 eV Total energy + Delta-G solvation = -3999.890161 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.64398 -39.97166 -38.19755 -37.81995 -34.49492 -33.96012 -33.53829 -32.58265 -31.36993 -28.58304 -28.30154 -28.14976 -27.83604 -25.32681 -24.73236 -24.26157 -22.12869 -21.32403 -20.97085 -20.42653 -19.57045 -18.08278 -17.62779 -17.20290 -16.80110 -16.55355 -15.14238 -15.02369 -14.83738 -14.69536 -14.48467 -14.47051 -14.19460 -13.56290 -13.49433 -13.33216 -13.11720 -13.09485 -12.95661 -12.87962 -12.46344 -12.43845 -12.16708 -12.12620 -11.99696 -11.72656 -11.28607 -11.23988 -11.22043 -10.93959 -10.90864 -10.74901 -10.58761 -10.50716 -10.39415 -10.34634 -10.10673 -9.91359 -9.67732 -9.03110 -8.83535 -6.87205 -5.72763 -3.00732 0.81600 1.30321 1.38812 2.71872 3.01746 3.46154 3.52003 3.54139 3.62156 3.86557 3.92025 4.03188 4.35664 4.58253 4.74847 4.82367 4.83314 4.84003 4.85658 5.00671 5.04541 5.06417 5.06736 5.07296 5.32765 5.42029 5.46713 5.49614 5.58352 5.60132 5.63739 5.67346 5.73364 5.84275 5.85290 5.94346 6.09811 6.17513 6.24954 6.34207 6.45357 6.57804 6.63064 6.82902 6.93415 7.33808 7.74978 7.91860 8.06658 8.46425 9.57820 10.15806 10.50957 11.50276 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.002562 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.495664 B =10926.484037 C =12613.385378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.176 3.824 3 C -0.161 4.161 4 C -0.160 4.160 5 N -0.126 5.126 6 N -0.055 5.055 7 N -0.253 5.253 8 C 0.128 3.872 9 C 0.618 3.382 10 O -0.512 6.512 11 N -0.692 5.692 12 C 0.146 3.854 13 H 0.103 0.897 14 C -0.133 4.133 15 C -0.121 4.121 16 C -0.112 4.112 17 C -0.102 4.102 18 H 0.082 0.918 19 C 0.160 3.840 20 N -0.730 5.730 21 C -0.236 4.236 22 H 0.070 0.930 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 N -0.246 5.246 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.412 0.588 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.021 0.979 47 H 0.018 0.982 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 -0.059 -28.018 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.096 3.904 3 C -0.220 4.220 4 C -0.218 4.218 5 N -0.041 5.041 6 N -0.047 5.047 7 N -0.128 5.128 8 C -0.156 4.156 9 C 0.397 3.603 10 O -0.384 6.384 11 N -0.343 5.343 12 C 0.041 3.959 13 H 0.121 0.879 14 C -0.172 4.172 15 C -0.160 4.160 16 C -0.150 4.150 17 C -0.122 4.122 18 H 0.100 0.900 19 C 0.033 3.967 20 N -0.375 5.375 21 C -0.367 4.367 22 H 0.088 0.912 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 N -0.099 5.099 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.248 0.752 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.218 0.782 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -5.399 0.386 -28.408 28.919 hybrid contribution -0.177 0.407 1.117 1.202 sum -5.577 0.793 -27.291 27.866 Atomic orbital electron populations 1.22115 0.89739 1.04773 1.04544 1.21527 0.96664 0.92904 0.79316 1.22271 1.03569 0.91825 1.04298 1.22261 1.03532 1.01101 0.94949 1.50757 1.00948 1.34249 1.18122 1.78899 1.21574 1.08755 0.95506 1.76172 1.00079 1.17458 1.19086 1.25357 0.94626 1.02286 0.93370 1.16092 0.84569 0.78603 0.81008 1.90841 1.25250 1.55248 1.67019 1.45721 1.11408 1.55771 1.21380 1.22206 0.86622 0.96089 0.90935 0.87888 1.22722 1.00242 0.95671 0.98537 1.22095 0.99581 0.99705 0.94575 1.22074 0.98533 0.97414 0.96939 1.22430 1.00123 0.97861 0.91761 0.89988 1.20701 0.97202 0.92620 0.86224 1.42328 1.80017 1.10630 1.04480 1.19275 1.36810 0.89937 0.90700 0.91246 1.24721 1.02334 0.96799 0.97212 1.69662 1.51388 1.21804 1.15408 0.86134 0.77151 0.81946 0.81092 1.20603 1.21913 1.21900 1.74974 1.02697 1.16965 1.15263 0.90381 0.89055 0.90465 0.90175 0.88930 0.91150 0.91287 0.88928 0.90204 0.75175 0.91267 0.91347 0.91789 0.91794 0.90885 0.91122 0.96093 0.96417 0.78234 0.93625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 7.90 37.16 0.29 -0.40 16 2 C 0.18 1.13 1.30 -131.82 -0.17 0.96 16 3 C -0.16 -0.86 8.66 37.16 0.32 -0.54 16 4 C -0.16 -0.77 8.66 37.16 0.32 -0.45 16 5 N -0.13 -1.38 3.72 0.52 0.00 -1.37 16 6 N -0.05 -0.69 12.21 60.35 0.74 0.05 16 7 N -0.25 -3.60 12.26 32.10 0.39 -3.21 16 8 C 0.13 1.86 8.14 -156.24 -1.27 0.59 16 9 C 0.62 9.48 7.84 -12.26 -0.10 9.38 16 10 O -0.51 -9.08 16.74 5.33 0.09 -8.99 16 11 N -0.69 -9.59 5.18 -52.79 -0.27 -9.87 16 12 C 0.15 2.06 2.69 -65.96 -0.18 1.88 16 13 H 0.10 1.59 7.46 -51.93 -0.39 1.20 16 14 C -0.13 -1.62 6.51 -25.07 -0.16 -1.78 16 15 C -0.12 -1.46 6.80 -25.61 -0.17 -1.63 16 16 C -0.11 -1.66 6.23 -25.61 -0.16 -1.82 16 17 C -0.10 -1.62 2.51 -88.98 -0.22 -1.85 16 18 H 0.08 1.31 8.02 -51.92 -0.42 0.89 16 19 C 0.16 3.27 5.59 -4.04 -0.02 3.24 16 20 N -0.73 -18.56 5.49 -59.91 -0.33 -18.89 16 21 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 22 H 0.07 1.95 7.83 -52.48 -0.41 1.53 16 23 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 24 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 25 Si 0.91 22.80 29.55 -169.99 -5.02 17.78 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 N -0.25 -3.31 11.85 32.11 0.38 -2.93 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.41 5.32 8.32 -40.82 -0.34 4.98 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.18 7.71 -51.93 -0.40 0.78 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.02 0.44 7.95 -51.93 -0.41 0.03 16 47 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.38 10.15 7.63 -40.82 -0.31 9.84 16 49 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -34.40 405.05 -7.12 -41.52 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.15 Total: 7.33 kcal Atomic # 6 Polarization: 1.95 SS G_CDS: -1.77 Total: 0.19 kcal Atomic # 7 Polarization: -65.56 SS G_CDS: 1.64 Total: -63.92 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.40 -7.12 -41.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320131801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.616 kcal (2) G-P(sol) polarization free energy of solvation -34.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds