Wall clock time and date at job start Tue Mar 31 2020 20:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47455 * 2 1 4 4 C 1.52999 * 109.46827 * 240.00131 * 2 1 3 5 5 N 1.46497 * 109.47431 * 120.00249 * 2 1 3 6 6 N 1.28724 * 125.31588 * 0.02562 * 5 2 1 7 7 N 1.28983 * 108.98458 * 179.97438 * 6 5 2 8 8 C 1.34185 * 107.25725 * 359.97438 * 7 6 5 9 9 C 1.47999 * 126.70237 * 180.02562 * 8 7 6 10 10 O 1.21537 * 120.00000 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00263 * 359.97438 * 9 8 7 12 12 C 1.46499 * 120.00593 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.66826 * 31.76312 * 12 11 9 14 14 C 1.54885 * 110.75558 * 268.33049 * 12 11 9 15 15 C 1.54267 * 104.19439 * 203.74084 * 14 12 11 16 16 C 1.53875 * 106.59942 * 23.60803 * 15 14 12 17 17 C 1.54265 * 106.59688 * 359.97438 * 16 15 14 18 18 H 1.09010 * 110.59897 * 95.12741 * 17 16 15 19 19 C 1.53000 * 110.48933 * 217.70897 * 17 16 15 20 20 N 1.46498 * 109.47306 * 289.78281 * 19 17 16 21 21 C 1.36938 * 119.99993 * 179.97438 * 20 19 17 22 22 H 1.08003 * 119.99941 * 359.97438 * 21 20 19 23 23 C 1.38812 * 119.99975 * 179.97438 * 21 20 19 24 24 N 1.31616 * 120.00194 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99860 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47261 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47198 * 120.00246 * 25 23 21 28 28 H 1.48504 * 109.46998 * 240.00198 * 25 23 21 29 29 N 1.28864 * 125.32183 * 179.97438 * 5 2 1 30 30 H 1.09001 * 109.47075 * 300.00089 * 1 2 3 31 31 H 1.08999 * 109.47283 * 59.99291 * 1 2 3 32 32 H 1.08996 * 109.47699 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47462 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.46996 * 300.00330 * 3 2 1 35 35 H 1.09001 * 109.47051 * 59.99897 * 3 2 1 36 36 H 1.08998 * 109.47509 * 300.00328 * 4 2 1 37 37 H 1.09005 * 109.47384 * 60.00337 * 4 2 1 38 38 H 1.09003 * 109.47530 * 180.02562 * 4 2 1 39 39 H 0.97003 * 119.99444 * 359.97438 * 11 9 8 40 40 H 1.08999 * 110.48697 * 322.41364 * 14 12 11 41 41 H 1.08994 * 110.48911 * 85.06058 * 14 12 11 42 42 H 1.09000 * 110.03154 * 264.32606 * 15 14 12 43 43 H 1.09001 * 110.07265 * 142.91397 * 15 14 12 44 44 H 1.08999 * 110.03476 * 240.71775 * 16 15 14 45 45 H 1.08997 * 110.07781 * 119.30628 * 16 15 14 46 46 H 1.09004 * 109.46613 * 49.77608 * 19 17 16 47 47 H 1.09004 * 109.47583 * 169.77353 * 19 17 16 48 48 H 0.96997 * 120.00421 * 359.97438 * 20 19 17 49 49 H 0.96993 * 120.00353 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1961 6 7 1.2762 -1.2169 2.1067 7 7 2.0308 -1.7403 3.0124 8 6 3.3030 -1.5272 2.6425 9 6 4.5190 -1.9499 3.3726 10 8 5.6182 -1.6912 2.9233 11 7 4.4075 -2.6217 4.5356 12 6 5.6111 -3.0406 5.2580 13 1 6.4221 -2.3299 5.0991 14 6 6.0364 -4.4685 4.8345 15 6 6.8576 -4.9894 6.0320 16 6 6.3987 -4.1869 7.2621 17 6 5.3151 -3.2059 6.7691 18 1 4.3205 -3.6262 6.9186 19 6 5.4410 -1.8623 7.4901 20 7 5.0408 -2.0202 8.8905 21 6 5.0724 -0.9444 9.7371 22 1 5.3926 0.0205 9.3725 23 6 4.6927 -1.0939 11.0639 24 7 4.3019 -2.2696 11.5081 25 14 4.7364 0.3736 12.2189 26 1 5.2096 1.5715 11.4797 27 1 3.3729 0.6259 12.7504 28 1 5.6620 0.0898 13.3450 29 7 3.2581 -0.8670 1.5006 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7217 -1.2492 39 1 3.5301 -2.8278 4.8944 40 1 5.1596 -5.0952 4.6718 41 1 6.6526 -4.4323 3.9362 42 1 7.9207 -4.8261 5.8550 43 1 6.6636 -6.0510 6.1852 44 1 7.2390 -3.6341 7.6821 45 1 5.9814 -4.8583 8.0125 46 1 6.4752 -1.5208 7.4441 47 1 4.7945 -1.1291 7.0079 48 1 4.7536 -2.8868 9.2181 49 1 4.0370 -2.3741 12.4353 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320131801.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:08 Heat of formation + Delta-G solvation = 64.945572 kcal Electronic energy + Delta-G solvation = -29132.713664 eV Core-core repulsion = 25131.776116 eV Total energy + Delta-G solvation = -4000.937548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.62608 -41.18533 -39.29218 -38.60794 -36.33551 -35.12824 -34.61621 -33.51841 -33.29508 -30.21104 -29.18329 -28.54734 -28.52200 -26.59180 -25.91973 -25.63246 -23.90197 -22.41554 -21.79724 -21.62470 -20.77354 -19.44774 -18.79474 -18.57656 -17.82247 -17.69519 -16.68328 -16.19593 -16.11171 -15.97783 -15.28943 -15.21634 -15.16519 -15.11143 -14.95664 -14.80293 -14.31274 -14.06347 -13.58997 -13.49044 -13.30033 -13.24246 -13.23821 -13.11518 -12.85946 -12.84375 -12.65761 -12.40973 -12.36568 -12.13423 -12.13003 -12.11778 -12.04644 -11.92281 -11.67520 -11.61915 -11.58801 -11.49674 -11.23405 -10.94702 -10.22952 -8.99724 -7.95705 -5.23955 -0.19393 0.22348 0.62180 1.46281 1.46759 1.56962 1.63959 1.84210 2.54877 2.75855 2.92034 3.37225 3.44459 3.47359 3.56109 3.63041 3.65509 3.87695 3.96520 4.18787 4.27546 4.39648 4.43589 4.47015 4.47795 4.51595 4.51633 4.57967 4.59548 4.67120 4.71554 4.71906 4.72066 4.96500 5.01070 5.02613 5.06618 5.10068 5.16256 5.17357 5.20943 5.27649 5.32373 5.47429 5.49069 5.53437 6.17321 6.27090 6.78118 7.01325 7.33793 8.08665 8.34193 9.27768 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011759 B = 0.002562 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2380.495664 B =10926.484037 C =12613.385378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.158 3.842 3 C -0.159 4.159 4 C -0.156 4.156 5 N -0.109 5.109 6 N -0.059 5.059 7 N -0.269 5.269 8 C 0.112 3.888 9 C 0.620 3.380 10 O -0.541 6.541 11 N -0.684 5.684 12 C 0.151 3.849 13 H 0.090 0.910 14 C -0.123 4.123 15 C -0.111 4.111 16 C -0.110 4.110 17 C -0.092 4.092 18 H 0.084 0.916 19 C 0.161 3.839 20 N -0.739 5.739 21 C -0.246 4.246 22 H 0.069 0.931 23 C -0.072 4.072 24 N -0.966 5.966 25 Si 0.971 3.029 26 H -0.270 1.270 27 H -0.292 1.292 28 H -0.291 1.291 29 N -0.256 5.256 30 H 0.067 0.933 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.130 0.870 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.130 0.870 38 H 0.064 0.936 39 H 0.417 0.583 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.017 0.983 47 H 0.010 0.990 48 H 0.377 0.623 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.266 0.310 -30.030 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.080 3.920 3 C -0.217 4.217 4 C -0.214 4.214 5 N -0.025 5.025 6 N -0.051 5.051 7 N -0.143 5.143 8 C -0.172 4.172 9 C 0.401 3.599 10 O -0.415 6.415 11 N -0.335 5.335 12 C 0.046 3.954 13 H 0.108 0.892 14 C -0.162 4.162 15 C -0.149 4.149 16 C -0.148 4.148 17 C -0.112 4.112 18 H 0.102 0.898 19 C 0.035 3.965 20 N -0.382 5.382 21 C -0.377 4.377 22 H 0.087 0.913 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.800 3.200 26 H -0.195 1.195 27 H -0.219 1.219 28 H -0.218 1.218 29 N -0.110 5.110 30 H 0.086 0.914 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.077 0.923 36 H 0.082 0.918 37 H 0.148 0.852 38 H 0.083 0.917 39 H 0.254 0.746 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.035 0.965 47 H 0.028 0.972 48 H 0.209 0.791 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.049 0.758 -30.442 31.046 hybrid contribution -0.029 0.376 1.619 1.662 sum -6.078 1.134 -28.823 29.479 Atomic orbital electron populations 1.22184 0.87977 1.04828 1.05844 1.22241 0.98077 0.93354 0.78317 1.22321 1.02571 0.91166 1.05631 1.22305 1.02573 1.01170 0.95385 1.51350 1.00050 1.32763 1.18383 1.78824 1.21514 1.08998 0.95743 1.76131 0.99968 1.18270 1.19958 1.25197 0.94522 1.03417 0.94018 1.16163 0.84489 0.78203 0.81079 1.90816 1.26304 1.56527 1.67847 1.45676 1.11639 1.55207 1.20929 1.22115 0.86280 0.97364 0.89616 0.89178 1.22672 1.00833 0.93962 0.98737 1.22042 1.00046 1.00177 0.92631 1.22022 0.97421 0.97157 0.98187 1.22282 1.00770 0.95579 0.92550 0.89791 1.20795 0.96303 0.95188 0.84244 1.42474 1.79998 1.09631 1.06084 1.19615 1.35997 0.90690 0.91446 0.91285 1.25516 1.02707 0.99479 0.98785 1.69802 1.52619 1.23674 1.15557 0.85112 0.76879 0.79140 0.78863 1.19469 1.21878 1.21767 1.74939 1.04024 1.17008 1.15010 0.91435 0.85362 0.91025 0.91748 0.85136 0.92253 0.91806 0.85200 0.91711 0.74551 0.90015 0.90720 0.90769 0.89885 0.92552 0.91796 0.96489 0.97243 0.79070 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.90 71.98 0.57 -0.46 16 2 C 0.16 1.77 1.30 3.60 0.00 1.78 16 3 C -0.16 -1.41 8.66 71.98 0.62 -0.79 16 4 C -0.16 -1.19 8.66 71.98 0.62 -0.56 16 5 N -0.11 -2.32 3.72 -152.26 -0.57 -2.89 16 6 N -0.06 -1.46 12.21 37.02 0.45 -1.01 16 7 N -0.27 -7.71 12.26 -52.36 -0.64 -8.35 16 8 C 0.11 3.31 8.14 137.15 1.12 4.43 16 9 C 0.62 19.27 7.84 86.83 0.68 19.95 16 10 O -0.54 -19.46 16.74 -3.83 -0.06 -19.52 16 11 N -0.68 -18.96 5.18 -439.21 -2.27 -21.24 16 12 C 0.15 4.20 2.69 46.27 0.12 4.32 16 13 H 0.09 2.80 7.46 -2.39 -0.02 2.78 16 14 C -0.12 -2.79 6.51 31.67 0.21 -2.58 16 15 C -0.11 -2.45 6.80 31.32 0.21 -2.24 16 16 C -0.11 -3.22 6.23 31.32 0.20 -3.03 16 17 C -0.09 -2.94 2.51 -9.73 -0.02 -2.96 16 18 H 0.08 2.66 8.02 -2.38 -0.02 2.64 16 19 C 0.16 6.71 5.59 86.38 0.48 7.19 16 20 N -0.74 -38.25 5.49 -343.44 -1.89 -40.13 16 21 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 22 H 0.07 3.90 7.83 -2.91 -0.02 3.87 16 23 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 24 N -0.97 -59.54 13.06 21.65 0.28 -59.25 16 25 Si 0.97 47.14 29.55 68.60 2.03 49.17 16 26 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 27 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 28 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 29 N -0.26 -6.91 11.85 -52.32 -0.62 -7.53 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 35 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.13 0.01 8.14 -2.38 -0.02 -0.01 16 38 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.42 10.77 8.32 -92.71 -0.77 9.99 16 40 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.06 1.83 7.71 -2.39 -0.02 1.82 16 45 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 46 H 0.02 0.73 7.95 -2.39 -0.02 0.71 16 47 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 48 H 0.38 20.36 7.63 -92.71 -0.71 19.65 16 49 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -75.23 405.05 2.31 -72.92 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -0.52 Total: 29.85 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 6.12 Total: 7.99 kcal Atomic # 7 Polarization: -135.15 SS G_CDS: -5.25 Total: -140.40 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.06 Total: -19.52 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -75.23 2.31 -72.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320131801.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.863 kcal (2) G-P(sol) polarization free energy of solvation -75.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds