Wall clock time and date at job start Tue Mar 31 2020 19:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00144 * 2 1 4 4 C 1.53003 * 109.47496 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47176 * 179.97438 * 4 3 2 6 6 C 1.35033 * 124.88267 * 125.00496 * 5 4 3 7 7 C 1.35368 * 107.23042 * 180.02562 * 6 5 4 8 8 C 1.41511 * 105.50103 * 359.97438 * 7 6 5 9 9 C 1.47708 * 126.51591 * 180.02562 * 8 7 6 10 10 O 1.21569 * 120.00177 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99597 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99893 * 179.97438 * 11 9 8 13 13 H 1.09009 * 110.53523 * 327.60877 * 12 11 9 14 14 C 1.54892 * 110.49111 * 90.21954 * 12 11 9 15 15 C 1.54884 * 102.75057 * 156.62275 * 14 12 11 16 16 C 1.54270 * 104.19362 * 322.05925 * 15 14 12 17 17 C 1.53875 * 106.59905 * 23.61130 * 16 15 14 18 18 H 1.09002 * 110.02866 * 240.66413 * 17 16 15 19 19 C 1.53001 * 110.02758 * 119.28733 * 17 16 15 20 20 N 1.46496 * 109.47205 * 66.45429 * 19 17 16 21 21 C 1.36945 * 119.99718 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 N 1.28471 * 124.88929 * 305.33932 * 5 4 3 30 30 H 1.09009 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47381 * 299.99955 * 1 2 3 32 32 H 1.08992 * 109.47396 * 60.00137 * 1 2 3 33 33 H 1.09006 * 109.46984 * 59.99665 * 3 2 1 34 34 H 1.09001 * 109.47087 * 299.99832 * 3 2 1 35 35 H 1.09007 * 109.46679 * 60.00023 * 4 3 2 36 36 H 1.09001 * 109.46905 * 300.00054 * 4 3 2 37 37 H 1.07997 * 126.38686 * 0.03505 * 6 5 4 38 38 H 1.07993 * 127.25228 * 180.02562 * 7 6 5 39 39 H 0.96996 * 120.00067 * 359.97438 * 11 9 8 40 40 H 1.09004 * 110.75015 * 38.30285 * 14 12 11 41 41 H 1.09000 * 110.75351 * 274.93669 * 14 12 11 42 42 H 1.08998 * 110.48629 * 203.37970 * 15 14 12 43 43 H 1.08997 * 110.48525 * 80.73757 * 15 14 12 44 44 H 1.09003 * 110.02901 * 264.32349 * 16 15 14 45 45 H 1.09003 * 110.06841 * 142.92028 * 16 15 14 46 46 H 1.08997 * 109.46922 * 306.44471 * 19 17 16 47 47 H 1.09000 * 109.46483 * 186.45290 * 19 17 16 48 48 H 0.96996 * 120.00499 * 359.97438 * 20 19 17 49 49 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5230 0.0000 6 6 5.0255 2.9706 0.9074 7 6 5.3347 4.2448 0.5708 8 6 4.5726 4.5254 -0.5881 9 6 4.5584 5.7938 -1.3449 10 8 5.2501 6.7256 -0.9826 11 7 3.7777 5.9184 -2.4365 12 6 3.7632 7.1766 -3.1868 13 1 3.9216 8.0226 -2.5178 14 6 4.8400 7.1566 -4.2999 15 6 4.3035 8.1978 -5.3133 16 6 2.7758 7.9835 -5.3028 17 6 2.4323 7.3342 -3.9507 18 1 1.9749 6.3579 -4.1109 19 6 1.4795 8.2361 -3.1634 20 7 0.1907 8.3077 -3.8561 21 6 -0.8263 9.0617 -3.3340 22 1 -0.6782 9.6032 -2.4114 23 6 -2.0473 9.1300 -3.9905 24 7 -2.2279 8.4696 -5.1147 25 14 -3.4347 10.1580 -3.2780 26 1 -4.6239 10.0656 -4.1625 27 1 -3.7822 9.6514 -1.9260 28 1 -3.0008 11.5747 -3.1793 29 7 3.8736 3.4417 -0.8603 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6436 -0.8892 36 1 3.8567 0.6439 0.8909 37 1 5.4205 2.4155 1.7454 38 1 6.0194 4.9074 1.0791 39 1 3.2256 5.1751 -2.7253 40 1 4.9041 6.1693 -4.7576 41 1 5.8086 7.4645 -3.9059 42 1 4.7087 8.0068 -6.3070 43 1 4.5492 9.2086 -4.9879 44 1 2.4860 7.3218 -6.1192 45 1 2.2632 8.9407 -5.3984 46 1 1.9066 9.2359 -3.0860 47 1 1.3329 7.8253 -2.1645 48 1 0.0576 7.8210 -4.6845 49 1 -3.0814 8.5171 -5.5733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320154499.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:53 Heat of formation + Delta-G solvation = 2.149556 kcal Electronic energy + Delta-G solvation = -28818.842605 eV Core-core repulsion = 24782.889266 eV Total energy + Delta-G solvation = -4035.953339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.90277 -39.71008 -38.42966 -37.82096 -34.42677 -34.30135 -33.46872 -31.33560 -30.97659 -29.90806 -28.50187 -27.65352 -26.67042 -24.78050 -24.16125 -22.61015 -22.02972 -21.65646 -20.47126 -20.18558 -19.25666 -18.08118 -17.31157 -16.96146 -16.64439 -16.42624 -16.31253 -15.92204 -15.17768 -14.79980 -14.65478 -14.53630 -14.25784 -14.12468 -13.66199 -13.55273 -13.44218 -13.19465 -12.98714 -12.73322 -12.47431 -12.10839 -12.10393 -11.81204 -11.78474 -11.26193 -11.09888 -10.86797 -10.78010 -10.72222 -10.51833 -10.40190 -10.19930 -10.12003 -10.06362 -9.87911 -9.66651 -9.51654 -9.31264 -8.83485 -8.82237 -6.87770 -5.73287 -3.01310 1.42004 1.90613 1.99249 3.20175 3.37063 3.45440 3.46210 3.50264 3.51563 4.03497 4.35579 4.48820 4.52851 4.59388 4.67641 4.79559 4.90600 4.92624 4.95429 5.04527 5.13886 5.17792 5.25643 5.30476 5.44073 5.54858 5.56204 5.60998 5.67535 5.73167 5.79657 5.91110 6.00467 6.13883 6.16347 6.26925 6.34170 6.38111 6.42738 6.56620 6.57640 6.61426 6.72189 6.86425 6.98728 7.49045 7.73427 7.77122 8.29533 8.46029 9.57126 10.15528 10.50915 11.49598 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007765 B = 0.002999 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.973311 B = 9334.860222 C =11804.929969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.048 3.952 4 C 0.126 3.874 5 N -0.283 5.283 6 C -0.017 4.017 7 C -0.178 4.178 8 C -0.010 4.010 9 C 0.604 3.396 10 O -0.535 6.535 11 N -0.704 5.704 12 C 0.146 3.854 13 H 0.099 0.901 14 C -0.132 4.132 15 C -0.122 4.122 16 C -0.115 4.115 17 C -0.102 4.102 18 H 0.076 0.924 19 C 0.160 3.840 20 N -0.731 5.731 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.935 5.935 25 Si 0.906 3.094 26 H -0.291 1.291 27 H -0.287 1.287 28 H -0.286 1.286 29 N -0.260 5.260 30 H 0.091 0.909 31 H 0.045 0.955 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.103 0.897 36 H 0.112 0.888 37 H 0.183 0.817 38 H 0.164 0.836 39 H 0.406 0.594 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.022 0.978 47 H 0.017 0.983 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.302 -17.719 9.415 25.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.030 4.030 4 C 0.005 3.995 5 N -0.072 5.072 6 C -0.159 4.159 7 C -0.206 4.206 8 C -0.171 4.171 9 C 0.388 3.612 10 O -0.410 6.410 11 N -0.354 5.354 12 C 0.041 3.959 13 H 0.117 0.883 14 C -0.171 4.171 15 C -0.160 4.160 16 C -0.153 4.153 17 C -0.122 4.122 18 H 0.094 0.906 19 C 0.033 3.967 20 N -0.375 5.375 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.584 5.584 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.214 1.214 28 H -0.213 1.213 29 N -0.095 5.095 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.241 0.759 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.039 0.961 47 H 0.035 0.965 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.952 -17.659 9.024 24.836 hybrid contribution -0.883 0.426 0.634 1.168 sum 14.069 -17.234 9.658 24.253 Atomic orbital electron populations 1.22814 0.79530 1.03191 1.00816 1.87747 1.20909 1.26600 1.95681 1.22660 0.91941 0.85726 1.02649 1.21683 0.93252 0.78430 1.06140 1.45317 1.31158 1.11439 1.19310 1.22882 0.98017 0.96647 0.98310 1.21805 1.04615 0.95918 0.98227 1.22048 1.01309 0.94119 0.99583 1.16875 0.79822 0.84799 0.79715 1.90785 1.42547 1.39138 1.68547 1.45934 1.44873 1.16853 1.27782 1.21979 0.95094 0.86230 0.92604 0.88345 1.22861 0.98420 0.99680 0.96137 1.22316 0.96099 0.98932 0.98623 1.22129 0.94920 1.02078 0.96133 1.22183 0.94116 1.00451 0.95432 0.90608 1.20731 0.86412 0.95558 0.94011 1.42339 1.08658 1.58506 1.27999 1.19202 0.91348 1.21266 1.05057 0.91322 1.24716 0.97923 1.00880 0.97490 1.69652 1.24554 1.46288 1.17869 0.86276 0.81912 0.80110 0.77960 1.21714 1.21361 1.21270 1.73504 1.22296 0.97780 1.15961 0.89098 0.93680 0.93281 0.92377 0.91004 0.87869 0.86962 0.79982 0.81871 0.75895 0.91406 0.91381 0.91783 0.91504 0.91894 0.90194 0.96058 0.96528 0.78245 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.24 10.70 -35.23 -0.38 -3.62 16 3 C 0.05 0.37 6.04 37.16 0.22 0.60 16 4 C 0.13 0.79 6.77 -4.04 -0.03 0.77 16 5 N -0.28 -2.59 3.41 -61.33 -0.21 -2.80 16 6 C -0.02 -0.13 11.40 -17.17 -0.20 -0.33 16 7 C -0.18 -1.94 10.81 -39.36 -0.43 -2.36 16 8 C -0.01 -0.13 7.13 -82.77 -0.59 -0.72 16 9 C 0.60 9.27 7.82 -12.39 -0.10 9.17 16 10 O -0.54 -9.61 16.57 5.30 0.09 -9.52 16 11 N -0.70 -10.05 5.16 -53.18 -0.27 -10.32 16 12 C 0.15 2.17 2.75 -66.27 -0.18 1.99 16 13 H 0.10 1.63 7.27 -51.92 -0.38 1.26 16 14 C -0.13 -1.73 6.58 -24.74 -0.16 -1.89 16 15 C -0.12 -1.58 6.83 -25.07 -0.17 -1.75 16 16 C -0.11 -1.79 6.13 -25.61 -0.16 -1.94 16 17 C -0.10 -1.69 2.71 -89.50 -0.24 -1.93 16 18 H 0.08 1.26 7.73 -51.93 -0.40 0.86 16 19 C 0.16 3.35 5.29 -4.04 -0.02 3.33 16 20 N -0.73 -18.73 5.34 -59.91 -0.32 -19.05 16 21 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 25 Si 0.91 22.72 29.55 -169.99 -5.02 17.70 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 29 N -0.26 -3.13 11.35 33.42 0.38 -2.75 16 30 H 0.09 0.46 8.14 -51.92 -0.42 0.04 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.11 0.41 8.04 -51.93 -0.42 -0.01 16 37 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 38 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.41 5.36 8.09 -40.82 -0.33 5.03 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 10.22 7.50 -40.82 -0.31 9.92 16 49 H 0.25 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 407.47 15.07 6.14 6.14 Total: -1.00 -34.57 407.47 -8.16 -42.74 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.11 Total: 10.35 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -1.18 Total: -1.19 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.30 Total: -62.60 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.29 Total: -13.14 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.57 -8.16 -42.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320154499.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.888 kcal (2) G-P(sol) polarization free energy of solvation -34.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds