Wall clock time and date at job start Tue Mar 31 2020 19:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00144 * 2 1 4 4 C 1.53003 * 109.47496 * 179.97438 * 3 2 1 5 5 N 1.46495 * 109.47176 * 179.97438 * 4 3 2 6 6 C 1.35033 * 124.88267 * 125.00496 * 5 4 3 7 7 C 1.35368 * 107.23042 * 180.02562 * 6 5 4 8 8 C 1.41511 * 105.50103 * 359.97438 * 7 6 5 9 9 C 1.47708 * 126.51591 * 180.02562 * 8 7 6 10 10 O 1.21569 * 120.00177 * 359.97438 * 9 8 7 11 11 N 1.34780 * 119.99597 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99893 * 179.97438 * 11 9 8 13 13 H 1.09009 * 110.53523 * 327.60877 * 12 11 9 14 14 C 1.54892 * 110.49111 * 90.21954 * 12 11 9 15 15 C 1.54884 * 102.75057 * 156.62275 * 14 12 11 16 16 C 1.54270 * 104.19362 * 322.05925 * 15 14 12 17 17 C 1.53875 * 106.59905 * 23.61130 * 16 15 14 18 18 H 1.09002 * 110.02866 * 240.66413 * 17 16 15 19 19 C 1.53001 * 110.02758 * 119.28733 * 17 16 15 20 20 N 1.46496 * 109.47205 * 66.45429 * 19 17 16 21 21 C 1.36945 * 119.99718 * 179.97438 * 20 19 17 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 19 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 19 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 N 1.28471 * 124.88929 * 305.33932 * 5 4 3 30 30 H 1.09009 * 109.47090 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47381 * 299.99955 * 1 2 3 32 32 H 1.08992 * 109.47396 * 60.00137 * 1 2 3 33 33 H 1.09006 * 109.46984 * 59.99665 * 3 2 1 34 34 H 1.09001 * 109.47087 * 299.99832 * 3 2 1 35 35 H 1.09007 * 109.46679 * 60.00023 * 4 3 2 36 36 H 1.09001 * 109.46905 * 300.00054 * 4 3 2 37 37 H 1.07997 * 126.38686 * 0.03505 * 6 5 4 38 38 H 1.07993 * 127.25228 * 180.02562 * 7 6 5 39 39 H 0.96996 * 120.00067 * 359.97438 * 11 9 8 40 40 H 1.09004 * 110.75015 * 38.30285 * 14 12 11 41 41 H 1.09000 * 110.75351 * 274.93669 * 14 12 11 42 42 H 1.08998 * 110.48629 * 203.37970 * 15 14 12 43 43 H 1.08997 * 110.48525 * 80.73757 * 15 14 12 44 44 H 1.09003 * 110.02901 * 264.32349 * 16 15 14 45 45 H 1.09003 * 110.06841 * 142.92028 * 16 15 14 46 46 H 1.08997 * 109.46922 * 306.44471 * 19 17 16 47 47 H 1.09000 * 109.46483 * 186.45290 * 19 17 16 48 48 H 0.96996 * 120.00499 * 359.97438 * 20 19 17 49 49 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5230 0.0000 6 6 5.0255 2.9706 0.9074 7 6 5.3347 4.2448 0.5708 8 6 4.5726 4.5254 -0.5881 9 6 4.5584 5.7938 -1.3449 10 8 5.2501 6.7256 -0.9826 11 7 3.7777 5.9184 -2.4365 12 6 3.7632 7.1766 -3.1868 13 1 3.9216 8.0226 -2.5178 14 6 4.8400 7.1566 -4.2999 15 6 4.3035 8.1978 -5.3133 16 6 2.7758 7.9835 -5.3028 17 6 2.4323 7.3342 -3.9507 18 1 1.9749 6.3579 -4.1109 19 6 1.4795 8.2361 -3.1634 20 7 0.1907 8.3077 -3.8561 21 6 -0.8263 9.0617 -3.3340 22 1 -0.6782 9.6032 -2.4114 23 6 -2.0473 9.1300 -3.9905 24 7 -2.2279 8.4696 -5.1147 25 14 -3.4347 10.1580 -3.2780 26 1 -4.6239 10.0656 -4.1625 27 1 -3.7822 9.6514 -1.9260 28 1 -3.0008 11.5747 -3.1793 29 7 3.8736 3.4417 -0.8603 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8574 0.6436 -0.8892 36 1 3.8567 0.6439 0.8909 37 1 5.4205 2.4155 1.7454 38 1 6.0194 4.9074 1.0791 39 1 3.2256 5.1751 -2.7253 40 1 4.9041 6.1693 -4.7576 41 1 5.8086 7.4645 -3.9059 42 1 4.7087 8.0068 -6.3070 43 1 4.5492 9.2086 -4.9879 44 1 2.4860 7.3218 -6.1192 45 1 2.2632 8.9407 -5.3984 46 1 1.9066 9.2359 -3.0860 47 1 1.3329 7.8253 -2.1645 48 1 0.0576 7.8210 -4.6845 49 1 -3.0814 8.5171 -5.5733 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320154499.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:17:52 Heat of formation + Delta-G solvation = -22.300781 kcal Electronic energy + Delta-G solvation = -28819.902851 eV Core-core repulsion = 24782.889266 eV Total energy + Delta-G solvation = -4037.013585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.68279 -40.93484 -39.19259 -38.96718 -36.31751 -35.07555 -34.65767 -33.29370 -31.75726 -30.65743 -30.17538 -28.75183 -27.31477 -26.37668 -25.30069 -24.00652 -23.22023 -22.42689 -21.62007 -21.32489 -20.48557 -19.33221 -18.74535 -17.95922 -17.63469 -17.37197 -17.03949 -16.68770 -16.63326 -16.10442 -15.96243 -15.75949 -15.31298 -15.18189 -14.97839 -14.87538 -14.70611 -14.27712 -14.20601 -14.01280 -13.52354 -13.14395 -13.12985 -13.01499 -12.78870 -12.64675 -12.42306 -12.36073 -12.18139 -11.96155 -11.91969 -11.89177 -11.74654 -11.64936 -11.32282 -11.23714 -10.94503 -10.80807 -10.35873 -10.13458 -9.96507 -9.02162 -7.96784 -5.25754 0.48464 1.16217 1.33195 1.45202 1.48297 1.54598 2.13470 2.35437 2.54179 2.75653 3.35611 3.36528 3.46674 3.67648 3.74901 3.81236 3.86883 3.98359 4.11179 4.19192 4.22014 4.39886 4.42654 4.45472 4.47888 4.48811 4.51864 4.60379 4.65088 4.65888 4.72914 4.74768 4.77688 4.81905 4.95470 5.02291 5.14723 5.14854 5.26526 5.31960 5.34654 5.45123 5.47629 5.58543 5.80782 5.97876 6.25219 6.41679 6.86335 7.14531 7.32071 8.06155 8.32693 9.26201 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.007765 B = 0.002999 C = 0.002371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3604.973311 B = 9334.860222 C =11804.929969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.278 5.278 6 C 0.010 3.990 7 C -0.201 4.201 8 C -0.040 4.040 9 C 0.601 3.399 10 O -0.570 6.570 11 N -0.700 5.700 12 C 0.151 3.849 13 H 0.079 0.921 14 C -0.121 4.121 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.091 4.091 18 H 0.076 0.924 19 C 0.163 3.837 20 N -0.739 5.739 21 C -0.252 4.252 22 H 0.069 0.931 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.973 3.027 26 H -0.291 1.291 27 H -0.279 1.279 28 H -0.279 1.279 29 N -0.278 5.278 30 H 0.107 0.893 31 H 0.049 0.951 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.111 0.889 36 H 0.150 0.850 37 H 0.232 0.768 38 H 0.167 0.833 39 H 0.411 0.589 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.052 0.948 46 H 0.017 0.983 47 H 0.006 0.994 48 H 0.377 0.623 49 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.229 -19.398 10.483 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.317 6.317 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.067 5.067 6 C -0.133 4.133 7 C -0.229 4.229 8 C -0.200 4.200 9 C 0.387 3.613 10 O -0.447 6.447 11 N -0.350 5.350 12 C 0.045 3.955 13 H 0.097 0.903 14 C -0.160 4.160 15 C -0.150 4.150 16 C -0.150 4.150 17 C -0.110 4.110 18 H 0.094 0.906 19 C 0.036 3.964 20 N -0.382 5.382 21 C -0.383 4.383 22 H 0.087 0.913 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.801 3.199 26 H -0.217 1.217 27 H -0.206 1.206 28 H -0.205 1.205 29 N -0.115 5.115 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.168 0.832 37 H 0.248 0.752 38 H 0.185 0.815 39 H 0.247 0.753 40 H 0.099 0.901 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.024 0.976 48 H 0.209 0.791 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 15.890 -19.349 10.099 26.998 hybrid contribution -1.190 0.862 0.367 1.515 sum 14.700 -18.487 10.466 25.834 Atomic orbital electron populations 1.22957 0.78912 1.04324 1.00732 1.87729 1.21670 1.26647 1.95657 1.22602 0.93160 0.85494 1.01544 1.21964 0.91959 0.77177 1.08414 1.45648 1.30772 1.11675 1.18633 1.23537 0.95972 0.95596 0.98158 1.22037 1.05264 0.97559 0.98019 1.21886 1.03326 0.93853 1.00890 1.17213 0.79168 0.85357 0.79581 1.90749 1.44008 1.40546 1.69444 1.45890 1.44792 1.16633 1.27674 1.21831 0.94780 0.86088 0.92760 0.90260 1.22789 0.97607 1.00445 0.95148 1.22276 0.93778 0.99014 0.99912 1.22066 0.96821 1.00606 0.95501 1.22035 0.93900 0.99390 0.95717 0.90588 1.20795 0.85550 0.96237 0.93771 1.42471 1.09756 1.58029 1.27920 1.19567 0.92343 1.21317 1.05100 0.91287 1.25528 1.00317 1.02396 0.98034 1.69802 1.24956 1.47752 1.19104 0.85231 0.78637 0.78687 0.77322 1.21704 1.20559 1.20463 1.73449 1.22657 0.98123 1.17248 0.87425 0.93213 0.93956 0.92575 0.93129 0.87112 0.83219 0.75180 0.81547 0.75293 0.90111 0.91028 0.89416 0.91390 0.91207 0.92869 0.96494 0.97648 0.79078 0.93865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -6.01 10.70 -148.98 -1.59 -7.61 16 3 C 0.05 0.72 6.04 71.98 0.43 1.15 16 4 C 0.12 1.23 6.77 86.38 0.58 1.81 16 5 N -0.28 -4.47 3.41 -347.95 -1.19 -5.65 16 6 C 0.01 0.13 11.40 83.54 0.95 1.08 16 7 C -0.20 -4.16 10.81 22.41 0.24 -3.92 16 8 C -0.04 -1.08 7.13 42.46 0.30 -0.77 16 9 C 0.60 18.92 7.82 86.75 0.68 19.60 16 10 O -0.57 -21.12 16.57 -3.93 -0.07 -21.18 16 11 N -0.70 -20.37 5.16 -440.44 -2.27 -22.64 16 12 C 0.15 4.54 2.75 46.07 0.13 4.67 16 13 H 0.08 2.73 7.27 -2.38 -0.02 2.71 16 14 C -0.12 -3.03 6.58 31.88 0.21 -2.82 16 15 C -0.11 -2.75 6.83 31.67 0.22 -2.53 16 16 C -0.11 -3.48 6.13 31.32 0.19 -3.29 16 17 C -0.09 -3.06 2.71 -10.07 -0.03 -3.09 16 18 H 0.08 2.56 7.73 -2.39 -0.02 2.54 16 19 C 0.16 7.04 5.29 86.38 0.46 7.49 16 20 N -0.74 -38.88 5.34 -343.47 -1.83 -40.72 16 21 C -0.25 -14.59 9.99 84.03 0.84 -13.75 16 22 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 23 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 24 N -0.97 -59.50 13.06 21.65 0.28 -59.22 16 25 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 28 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 29 N -0.28 -6.54 11.35 -48.17 -0.55 -7.08 16 30 H 0.11 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.05 0.93 8.08 -2.39 -0.02 0.92 16 35 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.15 0.40 8.04 -2.39 -0.02 0.38 16 37 H 0.23 0.59 8.06 -2.91 -0.02 0.56 16 38 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 39 H 0.41 11.06 8.09 -92.71 -0.75 10.31 16 40 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 41 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.05 1.95 7.58 -2.39 -0.02 1.93 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 48 H 0.38 20.65 7.50 -92.71 -0.70 19.95 16 49 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -76.27 407.47 1.25 -75.02 By element: Atomic # 1 Polarization: 37.01 SS G_CDS: -0.49 Total: 36.52 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: 6.92 Total: 3.57 kcal Atomic # 7 Polarization: -129.76 SS G_CDS: -5.56 Total: -135.31 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -1.66 Total: -28.79 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -76.27 1.25 -75.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320154499.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.721 kcal (2) G-P(sol) polarization free energy of solvation -76.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds