Wall clock time and date at job start Tue Mar 31 2020 19:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99818 * 2 1 4 4 C 1.52996 * 109.46830 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47194 * 180.02562 * 4 3 2 6 6 C 1.35034 * 124.88698 * 124.97532 * 5 4 3 7 7 C 1.35359 * 107.23143 * 179.72700 * 6 5 4 8 8 C 1.41499 * 105.50282 * 0.41864 * 7 6 5 9 9 C 1.47714 * 126.52092 * 179.84273 * 8 7 6 10 10 O 1.21568 * 119.99750 * 359.71108 * 9 8 7 11 11 N 1.34777 * 120.00105 * 179.70674 * 9 8 7 12 12 C 1.46495 * 120.00046 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.05580 * 326.42239 * 12 11 9 14 14 C 1.54267 * 110.03255 * 87.83418 * 12 11 9 15 15 C 1.54888 * 104.19920 * 142.89573 * 14 12 11 16 16 C 1.54968 * 102.77357 * 322.08618 * 15 14 12 17 17 C 1.53869 * 110.03665 * 205.00436 * 12 11 9 18 18 H 1.08998 * 110.03508 * 121.38160 * 17 12 11 19 19 C 1.52997 * 110.02968 * 359.97438 * 17 12 11 20 20 N 1.46506 * 109.47289 * 175.69121 * 19 17 12 21 21 C 1.36930 * 120.00258 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99823 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00439 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99225 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00268 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46935 * 90.00259 * 25 23 21 27 27 H 1.48507 * 109.47218 * 210.00042 * 25 23 21 28 28 H 1.48492 * 109.47204 * 330.00019 * 25 23 21 29 29 N 1.28474 * 124.88415 * 304.98123 * 5 4 3 30 30 H 1.09006 * 109.47137 * 59.99447 * 1 2 3 31 31 H 1.08997 * 109.46984 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46643 * 300.00056 * 1 2 3 33 33 H 1.09001 * 109.47069 * 60.00474 * 3 2 1 34 34 H 1.09002 * 109.47232 * 300.00346 * 3 2 1 35 35 H 1.09001 * 109.46909 * 60.00375 * 4 3 2 36 36 H 1.09002 * 109.47494 * 300.00184 * 4 3 2 37 37 H 1.08007 * 126.38007 * 0.02562 * 6 5 4 38 38 H 1.07999 * 127.25100 * 180.25798 * 7 6 5 39 39 H 0.97003 * 119.99815 * 0.02562 * 11 9 8 40 40 H 1.08998 * 110.49229 * 261.57936 * 14 12 11 41 41 H 1.09003 * 110.48328 * 24.08671 * 14 12 11 42 42 H 1.08994 * 110.75686 * 80.37227 * 15 14 12 43 43 H 1.09003 * 110.75837 * 203.56186 * 15 14 12 44 44 H 1.08998 * 110.48058 * 279.23277 * 16 15 14 45 45 H 1.09000 * 110.52806 * 156.56325 * 16 15 14 46 46 H 1.09001 * 109.47289 * 55.68992 * 19 17 12 47 47 H 1.09004 * 109.47261 * 295.69248 * 19 17 12 48 48 H 0.97001 * 119.99251 * 0.02562 * 20 19 17 49 49 H 0.97000 * 119.99950 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0259 2.9697 0.9075 7 6 5.3401 4.2419 0.5683 8 6 4.5728 4.5259 -0.5862 9 6 4.5582 5.7952 -1.3417 10 8 5.2509 6.7262 -0.9793 11 7 3.7771 5.9211 -2.4328 12 6 3.7622 7.1801 -3.1816 13 1 3.9006 8.0209 -2.5020 14 6 4.8768 7.1737 -4.2482 15 6 4.2480 7.9065 -5.4592 16 6 2.7814 7.4064 -5.4386 17 6 2.4306 7.3276 -3.9384 18 1 1.9223 8.2396 -3.6254 19 6 1.5393 6.1129 -3.6722 20 7 0.2373 6.3127 -4.3136 21 6 -0.7316 5.3505 -4.2105 22 1 -0.5360 4.4445 -3.6561 23 6 -1.9654 5.5400 -4.8177 24 7 -2.2038 6.6444 -5.4929 25 14 -3.2868 4.2271 -4.6777 26 1 -4.1174 4.4872 -3.4746 27 1 -4.1460 4.2584 -5.8886 28 1 -2.6475 2.8921 -4.5588 29 7 3.8780 3.4406 -0.8628 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8465 -0.8900 35 1 3.8567 0.6440 -0.8909 36 1 3.8575 0.6436 0.8891 37 1 5.4210 2.4137 1.7449 38 1 6.0290 4.9022 1.0740 39 1 3.2242 5.1783 -2.7217 40 1 5.7525 7.7138 -3.8881 41 1 5.1436 6.1511 -4.5150 42 1 4.2890 8.9869 -5.3208 43 1 4.7447 7.6181 -6.3857 44 1 2.7078 6.4215 -5.8998 45 1 2.1283 8.1162 -5.9462 46 1 1.4004 5.9925 -2.5978 47 1 2.0118 5.2192 -4.0799 48 1 0.0616 7.1266 -4.8112 49 1 -3.0658 6.7767 -5.9175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320154501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:02 Heat of formation + Delta-G solvation = 10.391204 kcal Electronic energy + Delta-G solvation = -29514.558995 eV Core-core repulsion = 25478.963041 eV Total energy + Delta-G solvation = -4035.595954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.81468 -39.82209 -38.28815 -37.78411 -34.34446 -34.19540 -33.46059 -31.38869 -30.89018 -29.80274 -28.53243 -27.59020 -26.52774 -24.65440 -24.26177 -22.48070 -22.42138 -21.56831 -20.49872 -19.99224 -18.92197 -18.12323 -17.28909 -16.97854 -16.61520 -16.29472 -15.97363 -15.65912 -15.12202 -15.07188 -14.68740 -14.47429 -14.16863 -14.06011 -13.70298 -13.53651 -13.49064 -13.17774 -12.95708 -12.85141 -12.35166 -12.11294 -11.96609 -11.65497 -11.57330 -11.29109 -10.98737 -10.88144 -10.80789 -10.74914 -10.44795 -10.34239 -10.26913 -10.04884 -10.00201 -9.91577 -9.68088 -9.43320 -9.23450 -8.91811 -8.75848 -6.92523 -5.77255 -3.05498 1.51503 1.99425 2.08124 3.30460 3.40792 3.45113 3.47675 3.48180 3.53862 4.14400 4.48463 4.53962 4.60693 4.61342 4.77198 4.81243 4.89505 5.06572 5.08407 5.16840 5.20613 5.26952 5.40126 5.46712 5.50826 5.52126 5.55960 5.61316 5.70264 5.72941 5.82899 5.91576 5.99596 6.11492 6.23804 6.24963 6.26620 6.36377 6.51434 6.52473 6.63862 6.68717 6.71130 6.79768 6.87937 7.58160 7.67979 7.86600 8.36447 8.41725 9.52834 10.11020 10.46345 11.45715 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.006385 B = 0.004599 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4384.427514 B = 6086.957382 C =10077.931272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.047 3.953 4 C 0.126 3.874 5 N -0.282 5.282 6 C -0.018 4.018 7 C -0.179 4.179 8 C -0.012 4.012 9 C 0.602 3.398 10 O -0.541 6.541 11 N -0.706 5.706 12 C 0.148 3.852 13 H 0.091 0.909 14 C -0.132 4.132 15 C -0.124 4.124 16 C -0.111 4.111 17 C -0.108 4.108 18 H 0.082 0.918 19 C 0.158 3.842 20 N -0.728 5.728 21 C -0.238 4.238 22 H 0.068 0.932 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.291 1.291 28 H -0.283 1.283 29 N -0.255 5.255 30 H 0.051 0.949 31 H 0.090 0.910 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.074 0.926 35 H 0.104 0.896 36 H 0.112 0.888 37 H 0.183 0.817 38 H 0.163 0.837 39 H 0.413 0.587 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.021 0.979 47 H 0.018 0.982 48 H 0.385 0.615 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.915 -9.081 11.208 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.031 4.031 4 C 0.005 3.995 5 N -0.071 5.071 6 C -0.160 4.160 7 C -0.207 4.207 8 C -0.173 4.173 9 C 0.387 3.613 10 O -0.417 6.417 11 N -0.360 5.360 12 C 0.043 3.957 13 H 0.109 0.891 14 C -0.170 4.170 15 C -0.162 4.162 16 C -0.149 4.149 17 C -0.127 4.127 18 H 0.101 0.899 19 C 0.030 3.970 20 N -0.373 5.373 21 C -0.369 4.369 22 H 0.086 0.914 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.217 1.217 28 H -0.208 1.208 29 N -0.091 5.091 30 H 0.069 0.931 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.130 0.870 37 H 0.200 0.800 38 H 0.181 0.819 39 H 0.252 0.748 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.039 0.961 47 H 0.036 0.964 48 H 0.219 0.781 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.574 -9.309 10.739 20.357 hybrid contribution -0.845 -0.377 0.444 1.026 sum 13.729 -9.687 11.184 20.184 Atomic orbital electron populations 1.22824 0.79494 1.03143 1.00954 1.87736 1.20940 1.26578 1.95703 1.22667 0.91838 0.85789 1.02775 1.21690 0.93354 0.78367 1.06098 1.45342 1.31179 1.11556 1.19048 1.22874 0.97929 0.96744 0.98414 1.21772 1.04513 0.95951 0.98419 1.22042 1.01452 0.94122 0.99667 1.16916 0.79770 0.84820 0.79840 1.90760 1.42731 1.39307 1.68853 1.46281 1.44794 1.17301 1.27602 1.21693 0.95032 0.86230 0.92730 0.89119 1.22768 0.97802 1.01102 0.95377 1.22496 0.96378 0.99802 0.97521 1.22369 0.95045 1.02085 0.95390 1.22220 0.94204 1.00797 0.95498 0.89919 1.20678 0.86874 0.93703 0.95756 1.42321 1.09618 1.22373 1.62939 1.19198 0.92517 0.97995 1.27185 0.91362 1.24717 0.97886 0.97601 1.00698 1.69655 1.23418 1.25915 1.39103 0.86222 0.82069 0.81047 0.77047 1.21803 1.21735 1.20846 1.73575 1.22206 0.97687 1.15639 0.93062 0.89150 0.93737 0.92440 0.90781 0.87818 0.87016 0.80032 0.81950 0.74759 0.91414 0.91316 0.91553 0.91659 0.91009 0.91175 0.96098 0.96439 0.78148 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.40 16 2 O -0.39 -3.99 10.70 -35.23 -0.38 -4.36 16 3 C 0.05 0.46 6.04 37.16 0.22 0.68 16 4 C 0.13 0.99 6.77 -4.04 -0.03 0.96 16 5 N -0.28 -2.95 3.41 -61.33 -0.21 -3.16 16 6 C -0.02 -0.16 11.40 -17.17 -0.20 -0.35 16 7 C -0.18 -2.08 10.81 -39.37 -0.43 -2.50 16 8 C -0.01 -0.17 7.13 -82.76 -0.59 -0.76 16 9 C 0.60 9.72 7.82 -12.39 -0.10 9.63 16 10 O -0.54 -9.82 16.58 5.31 0.09 -9.74 16 11 N -0.71 -10.96 4.40 -53.71 -0.24 -11.19 16 12 C 0.15 2.23 3.22 -66.82 -0.22 2.02 16 13 H 0.09 1.42 7.57 -51.93 -0.39 1.03 16 14 C -0.13 -1.76 6.53 -25.07 -0.16 -1.93 16 15 C -0.12 -1.57 6.91 -24.70 -0.17 -1.74 16 16 C -0.11 -1.72 6.05 -25.03 -0.15 -1.87 16 17 C -0.11 -1.79 2.97 -89.50 -0.27 -2.05 16 18 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 19 C 0.16 3.16 4.18 -4.04 -0.02 3.14 16 20 N -0.73 -18.27 5.44 -59.90 -0.33 -18.59 16 21 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 22 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.03 13.06 55.49 0.72 -27.30 16 25 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 N -0.26 -3.49 11.36 33.42 0.38 -3.11 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.11 0.54 8.04 -51.93 -0.42 0.13 16 37 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 38 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 39 H 0.41 6.52 5.61 -40.82 -0.23 6.29 16 40 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.20 7.77 -51.93 -0.40 0.80 16 45 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 46 H 0.02 0.44 7.46 -51.93 -0.39 0.05 16 47 H 0.02 0.36 7.08 -51.93 -0.37 -0.01 16 48 H 0.38 10.14 7.53 -40.82 -0.31 9.83 16 49 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 403.03 15.07 6.07 6.07 Total: -1.00 -33.72 403.03 -8.10 -41.82 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -7.96 Total: 13.00 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -1.23 Total: -0.61 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 0.33 Total: -63.36 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.29 Total: -14.10 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.72 -8.10 -41.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320154501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.210 kcal (2) G-P(sol) polarization free energy of solvation -33.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds