Wall clock time and date at job start Tue Mar 31 2020 19:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99818 * 2 1 4 4 C 1.52996 * 109.46830 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47194 * 180.02562 * 4 3 2 6 6 C 1.35034 * 124.88698 * 124.97532 * 5 4 3 7 7 C 1.35359 * 107.23143 * 179.72700 * 6 5 4 8 8 C 1.41499 * 105.50282 * 0.41864 * 7 6 5 9 9 C 1.47714 * 126.52092 * 179.84273 * 8 7 6 10 10 O 1.21568 * 119.99750 * 359.71108 * 9 8 7 11 11 N 1.34777 * 120.00105 * 179.70674 * 9 8 7 12 12 C 1.46495 * 120.00046 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.05580 * 326.42239 * 12 11 9 14 14 C 1.54267 * 110.03255 * 87.83418 * 12 11 9 15 15 C 1.54888 * 104.19920 * 142.89573 * 14 12 11 16 16 C 1.54968 * 102.77357 * 322.08618 * 15 14 12 17 17 C 1.53869 * 110.03665 * 205.00436 * 12 11 9 18 18 H 1.08998 * 110.03508 * 121.38160 * 17 12 11 19 19 C 1.52997 * 110.02968 * 359.97438 * 17 12 11 20 20 N 1.46506 * 109.47289 * 175.69121 * 19 17 12 21 21 C 1.36930 * 120.00258 * 180.02562 * 20 19 17 22 22 H 1.08004 * 119.99823 * 0.02562 * 21 20 19 23 23 C 1.38815 * 120.00439 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99225 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00268 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.46935 * 90.00259 * 25 23 21 27 27 H 1.48507 * 109.47218 * 210.00042 * 25 23 21 28 28 H 1.48492 * 109.47204 * 330.00019 * 25 23 21 29 29 N 1.28474 * 124.88415 * 304.98123 * 5 4 3 30 30 H 1.09006 * 109.47137 * 59.99447 * 1 2 3 31 31 H 1.08997 * 109.46984 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46643 * 300.00056 * 1 2 3 33 33 H 1.09001 * 109.47069 * 60.00474 * 3 2 1 34 34 H 1.09002 * 109.47232 * 300.00346 * 3 2 1 35 35 H 1.09001 * 109.46909 * 60.00375 * 4 3 2 36 36 H 1.09002 * 109.47494 * 300.00184 * 4 3 2 37 37 H 1.08007 * 126.38007 * 0.02562 * 6 5 4 38 38 H 1.07999 * 127.25100 * 180.25798 * 7 6 5 39 39 H 0.97003 * 119.99815 * 0.02562 * 11 9 8 40 40 H 1.08998 * 110.49229 * 261.57936 * 14 12 11 41 41 H 1.09003 * 110.48328 * 24.08671 * 14 12 11 42 42 H 1.08994 * 110.75686 * 80.37227 * 15 14 12 43 43 H 1.09003 * 110.75837 * 203.56186 * 15 14 12 44 44 H 1.08998 * 110.48058 * 279.23277 * 16 15 14 45 45 H 1.09000 * 110.52806 * 156.56325 * 16 15 14 46 46 H 1.09001 * 109.47289 * 55.68992 * 19 17 12 47 47 H 1.09004 * 109.47261 * 295.69248 * 19 17 12 48 48 H 0.97001 * 119.99251 * 0.02562 * 20 19 17 49 49 H 0.97000 * 119.99950 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0259 2.9697 0.9075 7 6 5.3401 4.2419 0.5683 8 6 4.5728 4.5259 -0.5862 9 6 4.5582 5.7952 -1.3417 10 8 5.2509 6.7262 -0.9793 11 7 3.7771 5.9211 -2.4328 12 6 3.7622 7.1801 -3.1816 13 1 3.9006 8.0209 -2.5020 14 6 4.8768 7.1737 -4.2482 15 6 4.2480 7.9065 -5.4592 16 6 2.7814 7.4064 -5.4386 17 6 2.4306 7.3276 -3.9384 18 1 1.9223 8.2396 -3.6254 19 6 1.5393 6.1129 -3.6722 20 7 0.2373 6.3127 -4.3136 21 6 -0.7316 5.3505 -4.2105 22 1 -0.5360 4.4445 -3.6561 23 6 -1.9654 5.5400 -4.8177 24 7 -2.2038 6.6444 -5.4929 25 14 -3.2868 4.2271 -4.6777 26 1 -4.1174 4.4872 -3.4746 27 1 -4.1460 4.2584 -5.8886 28 1 -2.6475 2.8921 -4.5588 29 7 3.8780 3.4406 -0.8628 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8465 -0.8900 35 1 3.8567 0.6440 -0.8909 36 1 3.8575 0.6436 0.8891 37 1 5.4210 2.4137 1.7449 38 1 6.0290 4.9022 1.0740 39 1 3.2242 5.1783 -2.7217 40 1 5.7525 7.7138 -3.8881 41 1 5.1436 6.1511 -4.5150 42 1 4.2890 8.9869 -5.3208 43 1 4.7447 7.6181 -6.3857 44 1 2.7078 6.4215 -5.8998 45 1 2.1283 8.1162 -5.9462 46 1 1.4004 5.9925 -2.5978 47 1 2.0118 5.2192 -4.0799 48 1 0.0616 7.1266 -4.8112 49 1 -3.0658 6.7767 -5.9175 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320154501.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:01 Heat of formation + Delta-G solvation = -12.859301 kcal Electronic energy + Delta-G solvation = -29515.567213 eV Core-core repulsion = 25478.963041 eV Total energy + Delta-G solvation = -4036.604172 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.68103 -41.09481 -39.18357 -38.96508 -36.24671 -35.06826 -34.62625 -33.32278 -31.75384 -30.66373 -30.18157 -28.72128 -27.30715 -26.38966 -25.28469 -24.24508 -23.35383 -22.41842 -21.64606 -21.09397 -20.34364 -19.34958 -18.79608 -18.08823 -17.51400 -17.16314 -17.02938 -16.68150 -16.60159 -16.33267 -15.98474 -15.69089 -15.35304 -15.24609 -15.08322 -14.84381 -14.73151 -14.39807 -14.27565 -13.98862 -13.49671 -13.16137 -13.04523 -12.86747 -12.79521 -12.65404 -12.39775 -12.36433 -12.19229 -11.94914 -11.88628 -11.80185 -11.73606 -11.54701 -11.46660 -11.23985 -10.95493 -10.82427 -10.36326 -10.13376 -9.96917 -9.02070 -7.96171 -5.25120 0.49252 1.17537 1.33419 1.44521 1.46502 1.54830 2.16158 2.35913 2.53977 2.74526 3.35380 3.37640 3.47553 3.67196 3.75361 3.80181 3.84466 3.98585 4.12015 4.16520 4.20371 4.37886 4.40563 4.44608 4.47633 4.49626 4.53219 4.59048 4.64418 4.65054 4.74098 4.75703 4.77836 4.80046 4.90742 4.97299 5.07790 5.21747 5.24714 5.32471 5.34161 5.45809 5.49016 5.53722 5.81494 5.96121 6.25302 6.40584 6.86324 7.13998 7.32324 8.06537 8.31996 9.27322 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.006385 B = 0.004599 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4384.427514 B = 6086.957382 C =10077.931272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.278 5.278 6 C 0.010 3.990 7 C -0.198 4.198 8 C -0.043 4.043 9 C 0.600 3.400 10 O -0.568 6.568 11 N -0.707 5.707 12 C 0.151 3.849 13 H 0.086 0.914 14 C -0.124 4.124 15 C -0.111 4.111 16 C -0.109 4.109 17 C -0.101 4.101 18 H 0.076 0.924 19 C 0.164 3.836 20 N -0.739 5.739 21 C -0.245 4.245 22 H 0.072 0.928 23 C -0.072 4.072 24 N -0.967 5.967 25 Si 0.970 3.030 26 H -0.287 1.287 27 H -0.294 1.294 28 H -0.269 1.269 29 N -0.284 5.284 30 H 0.036 0.964 31 H 0.109 0.891 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.044 0.956 35 H 0.108 0.892 36 H 0.154 0.846 37 H 0.234 0.766 38 H 0.170 0.830 39 H 0.410 0.590 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.056 0.944 45 H 0.062 0.938 46 H 0.013 0.987 47 H 0.021 0.979 48 H 0.376 0.624 49 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.192 -11.004 12.567 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.029 4.029 4 C 0.005 3.995 5 N -0.068 5.068 6 C -0.132 4.132 7 C -0.226 4.226 8 C -0.202 4.202 9 C 0.386 3.614 10 O -0.446 6.446 11 N -0.359 5.359 12 C 0.046 3.954 13 H 0.104 0.896 14 C -0.163 4.163 15 C -0.148 4.148 16 C -0.147 4.147 17 C -0.120 4.120 18 H 0.094 0.906 19 C 0.037 3.963 20 N -0.382 5.382 21 C -0.377 4.377 22 H 0.090 0.910 23 C -0.264 4.264 24 N -0.618 5.618 25 Si 0.799 3.201 26 H -0.214 1.214 27 H -0.220 1.220 28 H -0.194 1.194 29 N -0.120 5.120 30 H 0.055 0.945 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.126 0.874 36 H 0.171 0.829 37 H 0.250 0.750 38 H 0.188 0.812 39 H 0.249 0.751 40 H 0.095 0.905 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.031 0.969 47 H 0.039 0.961 48 H 0.208 0.792 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 15.874 -11.251 12.107 22.916 hybrid contribution -1.240 0.150 0.092 1.252 sum 14.635 -11.101 12.199 22.050 Atomic orbital electron populations 1.22960 0.79000 1.04354 1.00639 1.87721 1.21572 1.26601 1.95649 1.22605 0.93348 0.85505 1.01419 1.21953 0.91779 0.77309 1.08412 1.45649 1.30953 1.11704 1.18496 1.23574 0.95717 0.95755 0.98182 1.22030 1.05030 0.97528 0.98017 1.21963 1.03334 0.93831 1.01052 1.17222 0.79163 0.85399 0.79657 1.90725 1.43852 1.40447 1.69542 1.46291 1.44712 1.17169 1.27733 1.21676 0.94684 0.86096 0.92938 0.89610 1.22714 0.97330 1.01356 0.94901 1.22449 0.93914 1.00492 0.97993 1.22304 0.97148 1.01239 0.94003 1.22126 0.94288 0.98730 0.96838 0.90590 1.20719 0.85499 0.95464 0.94588 1.42494 1.10986 1.21575 1.63132 1.19572 0.93233 0.98443 1.26445 0.91018 1.25528 1.00117 0.99812 1.00942 1.69811 1.23737 1.27840 1.40368 0.85187 0.79151 0.79063 0.76673 1.21446 1.22019 1.19374 1.73521 1.23000 0.98291 1.17232 0.94526 0.87246 0.92928 0.92307 0.93730 0.87363 0.82868 0.75014 0.81220 0.75080 0.90499 0.91414 0.90105 0.89835 0.92476 0.91929 0.96925 0.96130 0.79194 0.93961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.40 -7.51 10.70 -148.98 -1.59 -9.10 16 3 C 0.05 0.90 6.04 71.98 0.44 1.34 16 4 C 0.12 1.63 6.77 86.38 0.58 2.22 16 5 N -0.28 -5.25 3.41 -347.95 -1.19 -6.44 16 6 C 0.01 0.15 11.40 83.54 0.95 1.10 16 7 C -0.20 -4.33 10.81 22.41 0.24 -4.09 16 8 C -0.04 -1.23 7.13 42.46 0.30 -0.92 16 9 C 0.60 19.77 7.82 86.75 0.68 20.45 16 10 O -0.57 -20.97 16.58 -3.93 -0.07 -21.04 16 11 N -0.71 -22.46 4.40 -442.11 -1.94 -24.40 16 12 C 0.15 4.59 3.22 45.72 0.15 4.73 16 13 H 0.09 2.71 7.57 -2.39 -0.02 2.69 16 14 C -0.12 -3.21 6.53 31.67 0.21 -3.00 16 15 C -0.11 -2.64 6.91 31.91 0.22 -2.42 16 16 C -0.11 -3.38 6.05 31.70 0.19 -3.19 16 17 C -0.10 -3.40 2.97 -10.07 -0.03 -3.43 16 18 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 19 C 0.16 6.76 4.18 86.38 0.36 7.12 16 20 N -0.74 -38.04 5.44 -343.44 -1.87 -39.91 16 21 C -0.25 -13.81 9.99 84.04 0.84 -12.97 16 22 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 23 C -0.07 -4.12 5.50 84.86 0.47 -3.65 16 24 N -0.97 -59.23 13.06 21.65 0.28 -58.94 16 25 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 26 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 29 N -0.28 -7.67 11.36 -48.17 -0.55 -8.21 16 30 H 0.04 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.04 1.07 8.08 -2.39 -0.02 1.06 16 35 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.15 0.77 8.04 -2.39 -0.02 0.75 16 37 H 0.23 0.86 8.06 -2.91 -0.02 0.84 16 38 H 0.17 3.31 8.06 -2.91 -0.02 3.29 16 39 H 0.41 13.42 5.61 -92.71 -0.52 12.90 16 40 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 42 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 44 H 0.06 1.93 7.77 -2.39 -0.02 1.91 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.01 0.55 7.46 -2.39 -0.02 0.54 16 47 H 0.02 0.86 7.08 -2.38 -0.02 0.84 16 48 H 0.38 20.45 7.53 -92.71 -0.70 19.75 16 49 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -74.51 403.03 1.69 -72.82 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -0.26 Total: 42.25 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 6.85 Total: 4.96 kcal Atomic # 7 Polarization: -132.64 SS G_CDS: -5.26 Total: -137.91 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -1.66 Total: -30.14 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -74.51 1.69 -72.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320154501.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.962 kcal (2) G-P(sol) polarization free energy of solvation -74.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds