Wall clock time and date at job start Tue Mar 31 2020 21:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.88916 * 2 1 4 4 C 1.55135 * 111.18992 * 236.06849 * 2 1 3 5 5 N 1.47421 * 104.72217 * 279.19547 * 4 2 1 6 6 C 1.34771 * 125.65109 * 155.82331 * 5 4 2 7 7 O 1.21538 * 120.00373 * 179.69011 * 6 5 4 8 8 C 1.48010 * 119.99748 * 359.68336 * 6 5 4 9 9 N 1.34183 * 126.69658 * 359.69086 * 8 6 5 10 10 N 1.28981 * 107.25265 * 180.26165 * 9 8 6 11 11 N 1.28721 * 108.98941 * 0.02562 * 10 9 8 12 12 C 1.46504 * 125.32284 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46819 * 239.99572 * 12 11 10 14 14 C 1.52999 * 109.47180 * 359.97438 * 12 11 10 15 15 C 1.52996 * 109.47355 * 119.99919 * 12 11 10 16 16 N 1.28869 * 109.35851 * 359.97438 * 11 10 9 17 17 C 1.47028 * 108.70441 * 335.55080 * 5 4 2 18 18 C 1.54327 * 107.26748 * 1.28918 * 17 5 4 19 19 H 1.09001 * 110.72087 * 263.82806 * 18 17 5 20 20 C 1.52999 * 110.71606 * 140.73169 * 18 17 5 21 21 N 1.46507 * 109.47214 * 66.45524 * 20 18 17 22 22 C 1.36937 * 120.00291 * 179.97438 * 21 20 18 23 23 H 1.08007 * 119.99472 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00087 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00144 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00050 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47011 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47289 * 120.00108 * 26 24 22 29 29 H 1.48506 * 109.47181 * 240.00218 * 26 24 22 30 30 H 1.08999 * 109.46959 * 296.12106 * 1 2 3 31 31 H 1.08999 * 109.47327 * 56.11370 * 1 2 3 32 32 H 1.08997 * 109.47388 * 176.11843 * 1 2 3 33 33 H 1.08997 * 110.49664 * 160.34980 * 4 2 1 34 34 H 1.09001 * 110.34205 * 37.96033 * 4 2 1 35 35 H 1.09004 * 109.46916 * 60.00213 * 13 12 11 36 36 H 1.08998 * 109.46737 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.47201 * 300.00401 * 13 12 11 38 38 H 1.09004 * 109.46721 * 60.00026 * 14 12 11 39 39 H 1.08995 * 109.47030 * 180.02562 * 14 12 11 40 40 H 1.09001 * 109.46928 * 300.00306 * 14 12 11 41 41 H 1.08998 * 109.47187 * 59.99923 * 15 12 11 42 42 H 1.08995 * 109.47333 * 179.97438 * 15 12 11 43 43 H 1.09004 * 109.46891 * 300.00185 * 15 12 11 44 44 H 1.09000 * 109.88070 * 120.70697 * 17 5 4 45 45 H 1.09001 * 109.88148 * 241.87797 * 17 5 4 46 46 H 1.09008 * 109.46952 * 186.44944 * 20 18 17 47 47 H 1.08991 * 109.47831 * 306.45547 * 20 18 17 48 48 H 0.96995 * 119.99592 * 0.02562 * 21 20 18 49 49 H 0.96999 * 120.00220 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0907 -0.8074 -1.2001 5 7 2.0137 -2.2162 -0.7726 6 6 1.9469 -3.2834 -1.5929 7 8 1.8922 -4.4050 -1.1277 8 6 1.9401 -3.0897 -3.0602 9 7 1.9892 -1.9194 -3.7148 10 7 1.9569 -2.1851 -4.9765 11 7 1.8897 -3.4608 -5.1343 12 6 1.8358 -4.1531 -6.4243 13 6 0.5422 -4.9653 -6.5136 14 6 1.8711 -3.1249 -7.5568 15 6 3.0371 -5.0921 -6.5499 16 7 1.8783 -4.0340 -3.9802 17 6 2.0284 -2.2645 0.6968 18 6 2.0861 -0.8075 1.2025 19 1 3.1133 -0.5156 1.4211 20 6 1.1999 -0.6275 2.4366 21 7 1.7528 -1.4001 3.5518 22 6 1.1247 -1.3917 4.7686 23 1 0.2214 -0.8157 4.9060 24 6 1.6482 -2.1242 5.8250 25 7 2.7487 -2.8265 5.6574 26 14 0.7910 -2.1132 7.4847 27 1 -0.4166 -1.2519 7.4124 28 1 0.3916 -3.4975 7.8447 29 1 1.7169 -1.5810 8.5166 30 1 -0.3633 0.4524 0.9227 31 1 -0.3634 0.5730 -0.8531 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1252 -0.5272 -1.3987 34 1 1.4764 -0.6456 -2.0858 35 1 -0.3138 -4.2962 -6.4242 36 1 0.5018 -5.4799 -7.4735 37 1 0.5166 -5.6977 -5.7067 38 1 2.7925 -2.5460 -7.4933 39 1 1.8305 -3.6399 -8.5165 40 1 1.0149 -2.4562 -7.4671 41 1 3.0116 -5.8246 -5.7431 42 1 2.9968 -5.6075 -7.5094 43 1 3.9587 -4.5135 -6.4862 44 1 1.1217 -2.7476 1.0608 45 1 2.9062 -2.8113 1.0409 46 1 1.1647 0.4277 2.7078 47 1 0.1924 -0.9794 2.2150 48 1 2.5642 -1.9171 3.4284 49 1 3.1148 -3.3381 6.3957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325508731.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:10 Heat of formation + Delta-G solvation = 110.100607 kcal Electronic energy + Delta-G solvation = -29558.636951 eV Core-core repulsion = 25559.657472 eV Total energy + Delta-G solvation = -3998.979479 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.65154 -40.13352 -38.20362 -37.82184 -34.70459 -33.77522 -33.01367 -32.39263 -31.10155 -29.10037 -28.21911 -28.15951 -26.86058 -26.13148 -24.76438 -24.49194 -22.98494 -21.65282 -21.05678 -19.92627 -19.14905 -17.77272 -17.65706 -17.11286 -16.72464 -16.09639 -15.83055 -14.95963 -14.79707 -14.74752 -14.39154 -14.26078 -13.83658 -13.63140 -13.45748 -13.18511 -13.10943 -13.06830 -12.96900 -12.60842 -12.47156 -12.45528 -12.23234 -12.16126 -12.07151 -11.79621 -11.72127 -11.52307 -11.24220 -11.22081 -10.96619 -10.81916 -10.59196 -10.44241 -10.38834 -10.25011 -10.22928 -9.90711 -9.63911 -8.84067 -8.56738 -6.88169 -5.72171 -3.01101 0.82042 1.31266 1.38066 2.64728 3.06883 3.46918 3.52205 3.54685 3.60205 3.78691 3.90538 4.01349 4.30462 4.57919 4.65056 4.74539 4.81604 4.83118 4.85021 4.99461 5.00269 5.03642 5.04752 5.07576 5.27517 5.37711 5.41861 5.48441 5.54022 5.58189 5.62760 5.65964 5.73770 5.84694 5.90932 5.96347 6.06432 6.09332 6.23149 6.30535 6.38361 6.41847 6.50703 6.73238 6.88382 7.41148 7.74402 7.86482 8.10227 8.46303 9.57606 10.14857 10.49102 11.50665 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002244 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.020877 B =12475.236756 C =13102.581146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.093 0.907 4 C 0.100 3.900 5 N -0.593 5.593 6 C 0.623 3.377 7 O -0.508 6.508 8 C 0.136 3.864 9 N -0.255 5.255 10 N -0.060 5.060 11 N -0.126 5.126 12 C 0.176 3.824 13 C -0.161 4.161 14 C -0.153 4.153 15 C -0.161 4.161 16 N -0.246 5.246 17 C 0.120 3.880 18 C -0.101 4.101 19 H 0.087 0.913 20 C 0.163 3.837 21 N -0.734 5.734 22 C -0.238 4.238 23 H 0.071 0.929 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.906 3.094 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.068 0.932 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.025 0.975 47 H 0.027 0.973 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.435 1.092 -31.236 31.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.111 0.889 4 C -0.023 4.023 5 N -0.326 5.326 6 C 0.404 3.596 7 O -0.380 6.380 8 C -0.147 4.147 9 N -0.129 5.129 10 N -0.052 5.052 11 N -0.040 5.040 12 C 0.096 3.904 13 C -0.219 4.219 14 C -0.211 4.211 15 C -0.219 4.219 16 N -0.099 5.099 17 C -0.001 4.001 18 C -0.121 4.121 19 H 0.105 0.895 20 C 0.035 3.965 21 N -0.378 5.378 22 C -0.370 4.370 23 H 0.089 0.911 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.042 0.958 47 H 0.045 0.955 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.590 0.730 -31.447 31.495 hybrid contribution -0.052 -0.455 1.309 1.386 sum -1.642 0.275 -30.138 30.184 Atomic orbital electron populations 1.21777 0.94153 1.02110 1.01988 1.22393 0.96608 0.99090 0.93636 0.88915 1.22751 1.01772 0.79354 0.98434 1.48201 1.70479 1.06191 1.07746 1.15660 0.78819 0.84229 0.80874 1.90883 1.49520 1.22743 1.74868 1.25284 1.06165 0.85718 0.97580 1.76203 1.16823 1.23351 0.96561 1.78870 1.15385 0.98106 1.12849 1.50739 1.42207 1.03674 1.07413 1.21523 0.99600 0.93371 0.75913 1.22267 0.94273 1.00580 1.04799 1.22105 1.04876 0.98232 0.95854 1.22264 0.95606 0.99302 1.04745 1.75007 1.18136 1.25937 0.90836 1.22165 1.03629 0.98206 0.76091 1.22515 1.01352 0.92892 0.95294 0.89456 1.20719 0.94617 0.95270 0.85851 1.42395 1.31041 1.56842 1.07537 1.19247 1.06118 1.23797 0.87793 0.91130 1.24745 0.97858 1.00138 0.98286 1.69667 1.22123 1.34773 1.31485 0.86129 0.78555 0.77194 0.84376 1.20582 1.21891 1.21935 0.91318 0.92904 0.92600 0.90938 0.88702 0.91263 0.88933 0.90145 0.90479 0.89074 0.90479 0.90148 0.88931 0.91263 0.90038 0.90611 0.95774 0.95525 0.78267 0.93563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.16 37.16 0.30 -1.46 16 2 C -0.10 -1.21 3.54 -88.35 -0.31 -1.52 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 4 C 0.10 1.25 5.65 -2.41 -0.01 1.24 16 5 N -0.59 -9.20 3.31 -171.42 -0.57 -9.77 16 6 C 0.62 10.64 7.87 -12.26 -0.10 10.54 16 7 O -0.51 -10.38 17.42 5.33 0.09 -10.29 16 8 C 0.14 2.05 7.96 -156.24 -1.24 0.80 16 9 N -0.25 -3.44 9.67 32.10 0.31 -3.13 16 10 N -0.06 -0.70 12.21 60.35 0.74 0.03 16 11 N -0.13 -1.34 3.72 0.53 0.00 -1.34 16 12 C 0.18 1.09 1.30 -131.82 -0.17 0.92 16 13 C -0.16 -0.81 8.66 37.16 0.32 -0.48 16 14 C -0.15 -0.61 7.90 37.16 0.29 -0.32 16 15 C -0.16 -0.81 8.66 37.16 0.32 -0.48 16 16 N -0.25 -3.39 11.85 32.11 0.38 -3.01 16 17 C 0.12 2.06 5.83 -3.06 -0.02 2.04 16 18 C -0.10 -1.59 2.86 -88.78 -0.25 -1.84 16 19 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 20 C 0.16 3.16 4.53 -4.04 -0.02 3.15 16 21 N -0.73 -18.42 5.45 -59.91 -0.33 -18.75 16 22 C -0.24 -6.69 9.99 -15.06 -0.15 -6.84 16 23 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 24 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 26 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 29 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 30 H 0.07 0.87 6.77 -51.93 -0.35 0.52 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.77 7.91 -51.93 -0.41 0.36 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.16 6.08 -51.93 -0.32 0.84 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 1.56 7.77 -51.93 -0.40 1.16 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 47 H 0.03 0.53 6.69 -51.93 -0.35 0.18 16 48 H 0.38 10.17 7.52 -40.82 -0.31 9.86 16 49 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 396.98 15.07 5.98 5.98 Total: -1.00 -34.70 396.98 -6.84 -41.54 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -8.02 Total: 3.63 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -1.13 Total: 5.23 kcal Atomic # 7 Polarization: -65.05 SS G_CDS: 1.26 Total: -63.79 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.70 -6.84 -41.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325508731.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.643 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds