Wall clock time and date at job start Tue Mar 31 2020 21:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 110.88916 * 2 1 4 4 C 1.55135 * 111.18992 * 236.06849 * 2 1 3 5 5 N 1.47421 * 104.72217 * 279.19547 * 4 2 1 6 6 C 1.34771 * 125.65109 * 155.82331 * 5 4 2 7 7 O 1.21538 * 120.00373 * 179.69011 * 6 5 4 8 8 C 1.48010 * 119.99748 * 359.68336 * 6 5 4 9 9 N 1.34183 * 126.69658 * 359.69086 * 8 6 5 10 10 N 1.28981 * 107.25265 * 180.26165 * 9 8 6 11 11 N 1.28721 * 108.98941 * 0.02562 * 10 9 8 12 12 C 1.46504 * 125.32284 * 180.02562 * 11 10 9 13 13 C 1.53005 * 109.46819 * 239.99572 * 12 11 10 14 14 C 1.52999 * 109.47180 * 359.97438 * 12 11 10 15 15 C 1.52996 * 109.47355 * 119.99919 * 12 11 10 16 16 N 1.28869 * 109.35851 * 359.97438 * 11 10 9 17 17 C 1.47028 * 108.70441 * 335.55080 * 5 4 2 18 18 C 1.54327 * 107.26748 * 1.28918 * 17 5 4 19 19 H 1.09001 * 110.72087 * 263.82806 * 18 17 5 20 20 C 1.52999 * 110.71606 * 140.73169 * 18 17 5 21 21 N 1.46507 * 109.47214 * 66.45524 * 20 18 17 22 22 C 1.36937 * 120.00291 * 179.97438 * 21 20 18 23 23 H 1.08007 * 119.99472 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00087 * 179.97438 * 22 21 20 25 25 N 1.31620 * 120.00144 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00050 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47011 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47289 * 120.00108 * 26 24 22 29 29 H 1.48506 * 109.47181 * 240.00218 * 26 24 22 30 30 H 1.08999 * 109.46959 * 296.12106 * 1 2 3 31 31 H 1.08999 * 109.47327 * 56.11370 * 1 2 3 32 32 H 1.08997 * 109.47388 * 176.11843 * 1 2 3 33 33 H 1.08997 * 110.49664 * 160.34980 * 4 2 1 34 34 H 1.09001 * 110.34205 * 37.96033 * 4 2 1 35 35 H 1.09004 * 109.46916 * 60.00213 * 13 12 11 36 36 H 1.08998 * 109.46737 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.47201 * 300.00401 * 13 12 11 38 38 H 1.09004 * 109.46721 * 60.00026 * 14 12 11 39 39 H 1.08995 * 109.47030 * 180.02562 * 14 12 11 40 40 H 1.09001 * 109.46928 * 300.00306 * 14 12 11 41 41 H 1.08998 * 109.47187 * 59.99923 * 15 12 11 42 42 H 1.08995 * 109.47333 * 179.97438 * 15 12 11 43 43 H 1.09004 * 109.46891 * 300.00185 * 15 12 11 44 44 H 1.09000 * 109.88070 * 120.70697 * 17 5 4 45 45 H 1.09001 * 109.88148 * 241.87797 * 17 5 4 46 46 H 1.09008 * 109.46952 * 186.44944 * 20 18 17 47 47 H 1.08991 * 109.47831 * 306.45547 * 20 18 17 48 48 H 0.96995 * 119.99592 * 0.02562 * 21 20 18 49 49 H 0.96999 * 120.00220 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0183 0.0000 4 6 2.0907 -0.8074 -1.2001 5 7 2.0137 -2.2162 -0.7726 6 6 1.9469 -3.2834 -1.5929 7 8 1.8922 -4.4050 -1.1277 8 6 1.9401 -3.0897 -3.0602 9 7 1.9892 -1.9194 -3.7148 10 7 1.9569 -2.1851 -4.9765 11 7 1.8897 -3.4608 -5.1343 12 6 1.8358 -4.1531 -6.4243 13 6 0.5422 -4.9653 -6.5136 14 6 1.8711 -3.1249 -7.5568 15 6 3.0371 -5.0921 -6.5499 16 7 1.8783 -4.0340 -3.9802 17 6 2.0284 -2.2645 0.6968 18 6 2.0861 -0.8075 1.2025 19 1 3.1133 -0.5156 1.4211 20 6 1.1999 -0.6275 2.4366 21 7 1.7528 -1.4001 3.5518 22 6 1.1247 -1.3917 4.7686 23 1 0.2214 -0.8157 4.9060 24 6 1.6482 -2.1242 5.8250 25 7 2.7487 -2.8265 5.6574 26 14 0.7910 -2.1132 7.4847 27 1 -0.4166 -1.2519 7.4124 28 1 0.3916 -3.4975 7.8447 29 1 1.7169 -1.5810 8.5166 30 1 -0.3633 0.4524 0.9227 31 1 -0.3634 0.5730 -0.8531 32 1 -0.3634 -1.0253 -0.0696 33 1 3.1252 -0.5272 -1.3987 34 1 1.4764 -0.6456 -2.0858 35 1 -0.3138 -4.2962 -6.4242 36 1 0.5018 -5.4799 -7.4735 37 1 0.5166 -5.6977 -5.7067 38 1 2.7925 -2.5460 -7.4933 39 1 1.8305 -3.6399 -8.5165 40 1 1.0149 -2.4562 -7.4671 41 1 3.0116 -5.8246 -5.7431 42 1 2.9968 -5.6075 -7.5094 43 1 3.9587 -4.5135 -6.4862 44 1 1.1217 -2.7476 1.0608 45 1 2.9062 -2.8113 1.0409 46 1 1.1647 0.4277 2.7078 47 1 0.1924 -0.9794 2.2150 48 1 2.5642 -1.9171 3.4284 49 1 3.1148 -3.3381 6.3957 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325508731.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:08 Heat of formation + Delta-G solvation = 86.095946 kcal Electronic energy + Delta-G solvation = -29559.677871 eV Core-core repulsion = 25559.657472 eV Total energy + Delta-G solvation = -4000.020399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.63398 -41.42730 -39.36111 -38.61895 -36.49174 -34.78983 -34.39547 -33.48031 -32.80632 -30.62768 -28.69624 -28.55093 -28.05600 -27.42480 -26.00874 -25.64344 -24.63577 -23.05313 -21.88844 -21.03749 -20.50790 -19.23130 -18.62954 -18.48391 -17.77241 -17.41798 -17.09859 -16.69197 -15.92713 -15.40858 -15.34061 -15.32357 -15.24046 -15.12318 -14.68441 -14.48530 -14.11898 -13.96230 -13.76446 -13.50231 -13.36601 -13.29158 -13.21012 -13.11298 -12.98165 -12.85467 -12.81853 -12.67910 -12.64823 -12.34943 -12.13796 -12.13138 -12.09239 -11.88958 -11.75234 -11.54966 -11.51379 -11.45489 -11.39075 -10.91765 -9.88742 -8.96731 -7.92982 -5.21456 -0.21071 0.22095 0.59484 1.47770 1.47996 1.49222 1.58821 1.78663 2.56958 2.63314 2.88419 3.38619 3.43332 3.47444 3.50347 3.57829 3.63890 3.79817 3.89724 4.15615 4.21699 4.28054 4.36310 4.39951 4.51428 4.52829 4.56089 4.59430 4.62396 4.71026 4.72854 4.72942 4.80811 4.84430 4.95284 5.01409 5.04722 5.09476 5.09949 5.16598 5.18466 5.22654 5.24587 5.32400 5.50973 5.52675 6.14415 6.29372 6.61761 7.01382 7.35561 8.12109 8.33840 9.30888 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.024491 B = 0.002244 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.020877 B =12475.236756 C =13102.581146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 H 0.126 0.874 4 C 0.101 3.899 5 N -0.588 5.588 6 C 0.620 3.380 7 O -0.555 6.555 8 C 0.120 3.880 9 N -0.257 5.257 10 N -0.055 5.055 11 N -0.108 5.108 12 C 0.159 3.841 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.158 4.158 16 N -0.260 5.260 17 C 0.126 3.874 18 C -0.091 4.091 19 H 0.092 0.908 20 C 0.164 3.836 21 N -0.748 5.748 22 C -0.239 4.239 23 H 0.078 0.922 24 C -0.080 4.080 25 N -0.971 5.971 26 Si 0.972 3.028 27 H -0.264 1.264 28 H -0.297 1.297 29 H -0.293 1.293 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.063 0.937 36 H 0.130 0.870 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.130 0.870 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.037 0.963 47 H 0.026 0.974 48 H 0.373 0.627 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.116 2.822 -33.995 34.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 H 0.144 0.856 4 C -0.020 4.020 5 N -0.320 5.320 6 C 0.403 3.597 7 O -0.431 6.431 8 C -0.163 4.163 9 N -0.131 5.131 10 N -0.047 5.047 11 N -0.025 5.025 12 C 0.081 3.919 13 C -0.216 4.216 14 C -0.206 4.206 15 C -0.216 4.216 16 N -0.114 5.114 17 C 0.004 3.996 18 C -0.111 4.111 19 H 0.110 0.890 20 C 0.038 3.962 21 N -0.390 5.390 22 C -0.371 4.371 23 H 0.096 0.904 24 C -0.272 4.272 25 N -0.622 5.622 26 Si 0.802 3.198 27 H -0.188 1.188 28 H -0.225 1.225 29 H -0.220 1.220 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.052 0.948 33 H 0.107 0.893 34 H 0.123 0.877 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.146 0.854 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.148 0.852 43 H 0.081 0.919 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.055 0.945 47 H 0.044 0.956 48 H 0.204 0.796 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.301 2.537 -34.253 34.424 hybrid contribution 0.122 -1.010 1.968 2.215 sum -2.179 1.527 -32.285 32.394 Atomic orbital electron populations 1.21775 0.93960 1.01171 1.03023 1.22441 0.96666 1.00063 0.91154 0.85566 1.22962 1.03066 0.77244 0.98754 1.48233 1.69474 1.07375 1.06895 1.15945 0.78015 0.83818 0.81932 1.90844 1.51767 1.24497 1.75972 1.24801 1.08174 0.86674 0.96632 1.76145 1.17093 1.22841 0.97012 1.78794 1.15218 0.98671 1.12018 1.51319 1.39909 1.03397 1.07836 1.22240 1.00773 0.94343 0.74570 1.22316 0.93253 0.99967 1.06113 1.22179 1.04339 0.97812 0.96317 1.22313 0.94672 0.98621 1.06044 1.74974 1.18368 1.26330 0.91761 1.21934 1.01287 0.98995 0.77395 1.22383 1.01143 0.92448 0.95088 0.88967 1.20862 0.94950 0.94798 0.85597 1.42637 1.30695 1.57366 1.08323 1.19674 1.05956 1.22654 0.88826 0.90379 1.25580 0.98915 1.00643 1.02021 1.69829 1.23908 1.36200 1.32242 0.85083 0.77939 0.76895 0.79918 1.18804 1.22455 1.22007 0.91597 0.90317 0.94789 0.89277 0.87716 0.91840 0.85182 0.92132 0.91002 0.85450 0.90985 0.92130 0.85181 0.91851 0.92781 0.92674 0.94530 0.95623 0.79555 0.94142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.16 71.98 0.59 -2.63 16 2 C -0.08 -1.89 3.54 -9.32 -0.03 -1.92 16 3 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.10 2.37 5.65 86.93 0.49 2.86 16 5 N -0.59 -18.60 3.31 -814.55 -2.70 -21.29 16 6 C 0.62 22.06 7.87 86.84 0.68 22.74 16 7 O -0.56 -24.15 17.42 -3.83 -0.07 -24.22 16 8 C 0.12 3.66 7.96 137.15 1.09 4.75 16 9 N -0.26 -6.70 9.67 -52.36 -0.51 -7.21 16 10 N -0.05 -1.23 12.21 37.02 0.45 -0.78 16 11 N -0.11 -2.21 3.72 -152.25 -0.57 -2.78 16 12 C 0.16 1.66 1.30 3.60 0.00 1.67 16 13 C -0.16 -1.29 8.66 71.98 0.62 -0.66 16 14 C -0.15 -0.75 7.90 71.98 0.57 -0.19 16 15 C -0.16 -1.29 8.66 71.98 0.62 -0.66 16 16 N -0.26 -7.25 11.85 -52.31 -0.62 -7.87 16 17 C 0.13 4.51 5.83 86.73 0.51 5.01 16 18 C -0.09 -2.82 2.86 -9.60 -0.03 -2.85 16 19 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 20 C 0.16 6.31 4.53 86.38 0.39 6.70 16 21 N -0.75 -38.13 5.45 -343.44 -1.87 -40.00 16 22 C -0.24 -13.49 9.99 84.03 0.84 -12.65 16 23 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 24 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 25 N -0.97 -61.04 13.06 21.65 0.28 -60.76 16 26 Si 0.97 47.19 29.55 68.60 2.03 49.22 16 27 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 28 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 29 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 30 H 0.07 1.54 6.77 -2.39 -0.02 1.52 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 0.91 7.91 -2.39 -0.02 0.89 16 33 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.10 2.34 6.08 -2.39 -0.01 2.32 16 35 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 40 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 41 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.05 2.22 7.77 -2.39 -0.02 2.20 16 45 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.03 1.01 6.69 -2.39 -0.02 1.00 16 48 H 0.37 20.43 7.52 -92.71 -0.70 19.73 16 49 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -78.42 396.98 3.51 -74.92 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.25 Total: 22.81 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: 6.82 Total: 17.97 kcal Atomic # 7 Polarization: -135.16 SS G_CDS: -5.52 Total: -140.69 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.07 Total: -24.22 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -78.42 3.51 -74.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325508731.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.013 kcal (2) G-P(sol) polarization free energy of solvation -78.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds