Wall clock time and date at job start Tue Mar 31 2020 21:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.63932 * 2 1 4 4 C 1.54325 * 110.72031 * 123.13990 * 2 1 3 5 5 N 1.47022 * 107.26808 * 140.55789 * 4 2 1 6 6 C 1.34777 * 125.64649 * 181.01926 * 5 4 2 7 7 O 1.21543 * 119.99917 * 180.02562 * 6 5 4 8 8 C 1.48007 * 120.00113 * 0.30106 * 6 5 4 9 9 N 1.34187 * 126.69428 * 359.41365 * 8 6 5 10 10 N 1.28983 * 107.24774 * 179.83087 * 9 8 6 11 11 N 1.28714 * 108.98952 * 0.43302 * 10 9 8 12 12 C 1.46510 * 125.32116 * 179.72157 * 11 10 9 13 13 C 1.53002 * 109.47164 * 239.99846 * 12 11 10 14 14 C 1.52998 * 109.46984 * 359.97438 * 12 11 10 15 15 C 1.53000 * 109.46947 * 120.00180 * 12 11 10 16 16 N 1.28875 * 109.36162 * 359.72189 * 11 10 9 17 17 C 1.47427 * 108.70606 * 1.28821 * 5 4 2 18 18 C 1.55122 * 104.71913 * 335.55290 * 17 5 4 19 19 H 1.09001 * 111.22820 * 279.17858 * 18 17 5 20 20 C 1.53004 * 110.90775 * 155.27691 * 18 17 5 21 21 N 1.46498 * 109.47095 * 72.97497 * 20 18 17 22 22 C 1.36935 * 120.00025 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00088 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00338 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99799 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00196 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46945 * 90.00040 * 26 24 22 28 28 H 1.48505 * 109.46937 * 209.99736 * 26 24 22 29 29 H 1.48489 * 109.47107 * 329.99969 * 26 24 22 30 30 H 1.08993 * 109.47001 * 298.31298 * 1 2 3 31 31 H 1.08994 * 109.47220 * 58.31557 * 1 2 3 32 32 H 1.09000 * 109.46731 * 178.31073 * 1 2 3 33 33 H 1.08992 * 109.88157 * 21.13997 * 4 2 1 34 34 H 1.09001 * 110.01111 * 260.04280 * 4 2 1 35 35 H 1.09005 * 109.46377 * 59.99906 * 13 12 11 36 36 H 1.08993 * 109.47169 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.47138 * 300.00268 * 13 12 11 38 38 H 1.09002 * 109.46997 * 59.99977 * 14 12 11 39 39 H 1.09004 * 109.46837 * 179.97438 * 14 12 11 40 40 H 1.08997 * 109.47349 * 300.00001 * 14 12 11 41 41 H 1.08998 * 109.47255 * 59.99792 * 15 12 11 42 42 H 1.09004 * 109.46855 * 179.97438 * 15 12 11 43 43 H 1.09002 * 109.47008 * 300.00007 * 15 12 11 44 44 H 1.09001 * 110.36625 * 94.47869 * 17 5 4 45 45 H 1.08998 * 110.36643 * 216.80556 * 17 5 4 46 46 H 1.09002 * 109.47013 * 192.97377 * 20 18 17 47 47 H 1.09002 * 109.47092 * 312.97260 * 20 18 17 48 48 H 0.97004 * 120.00319 * 359.97438 * 21 20 18 49 49 H 0.96992 * 120.00112 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 3.2445 -1.5494 0.7416 6 6 3.9924 -2.3809 1.4938 7 8 4.9405 -2.9596 1.0003 8 6 3.6555 -2.5941 2.9192 9 7 2.6487 -2.0241 3.5991 10 7 2.6987 -2.4756 4.8063 11 7 3.6911 -3.2888 4.9086 12 6 4.0795 -4.0021 6.1280 13 6 5.5066 -3.6098 6.5158 14 6 3.1228 -3.6307 7.2627 15 6 4.0151 -5.5103 5.8789 16 7 4.2899 -3.3774 3.7708 17 6 3.4666 -1.2466 -0.6840 18 6 2.0790 -0.7975 -1.2124 19 1 1.4448 -1.6556 -1.4350 20 6 2.2277 0.1039 -2.4398 21 7 2.6328 -0.7041 -3.5928 22 6 2.8289 -0.1094 -4.8105 23 1 2.6846 0.9552 -4.9211 24 6 3.2132 -0.8748 -5.9029 25 7 3.3896 -2.1722 -5.7681 26 14 3.4801 -0.0636 -7.5643 27 1 4.8962 0.3677 -7.6828 28 1 3.1658 -1.0329 -8.6446 29 1 2.5906 1.1191 -7.6862 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5397 -0.8744 32 1 -0.3633 -1.0272 -0.0303 33 1 1.3130 -1.4731 1.5801 34 1 2.3736 -0.1009 1.9998 35 1 5.5524 -2.5352 6.6931 36 1 5.7954 -4.1401 7.4231 37 1 6.1884 -3.8740 5.7074 38 1 2.1059 -3.9099 6.9866 39 1 3.4115 -4.1618 8.1698 40 1 3.1691 -2.5562 7.4400 41 1 4.6969 -5.7745 5.0706 42 1 4.3045 -6.0410 6.7860 43 1 2.9984 -5.7898 5.6026 44 1 4.1947 -0.4427 -0.7921 45 1 3.8032 -2.1381 -1.2132 46 1 1.2747 0.5883 -2.6524 47 1 2.9853 0.8627 -2.2437 48 1 2.7628 -1.6602 -3.4934 49 1 3.6585 -2.7070 -6.5313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325508733.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:14 Heat of formation + Delta-G solvation = 105.473013 kcal Electronic energy + Delta-G solvation = -29353.877062 eV Core-core repulsion = 25354.696916 eV Total energy + Delta-G solvation = -3999.180146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.64704 -40.05619 -38.16415 -37.77882 -34.69384 -33.77828 -33.06982 -32.47685 -31.33776 -29.22840 -28.21825 -28.15758 -26.65120 -26.03964 -24.75805 -24.43519 -22.93008 -21.28347 -20.97069 -20.00678 -19.84046 -17.76182 -17.65044 -17.09417 -16.82212 -16.20047 -15.54948 -14.92384 -14.77358 -14.58090 -14.41690 -14.20663 -13.99266 -13.58014 -13.49604 -13.13454 -13.11797 -13.03228 -12.94270 -12.85155 -12.49303 -12.45345 -12.26327 -12.18013 -12.08763 -11.94624 -11.72900 -11.33897 -11.23551 -11.16902 -11.02156 -10.82839 -10.60252 -10.53092 -10.40508 -10.32218 -10.23996 -9.97050 -9.62626 -8.84075 -8.60670 -6.88788 -5.72071 -3.01286 0.81909 1.31744 1.38277 2.63736 3.05558 3.47159 3.51882 3.53791 3.60188 3.77885 3.90736 4.01519 4.30171 4.58432 4.62580 4.77034 4.82288 4.83290 4.85642 4.95012 4.99616 5.03332 5.04958 5.06051 5.28966 5.39682 5.43086 5.48650 5.55219 5.57325 5.60773 5.62928 5.69893 5.82383 5.84853 5.94491 6.05879 6.09550 6.16384 6.23434 6.30198 6.41851 6.47105 6.74641 6.87093 7.39592 7.73732 7.85650 8.09254 8.46219 9.57432 10.14640 10.48908 11.50626 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.002224 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.895436 B =12586.270207 C =13437.446372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.109 3.891 5 N -0.596 5.596 6 C 0.624 3.376 7 O -0.508 6.508 8 C 0.135 3.865 9 N -0.253 5.253 10 N -0.060 5.060 11 N -0.126 5.126 12 C 0.176 3.824 13 C -0.161 4.161 14 C -0.153 4.153 15 C -0.161 4.161 16 N -0.246 5.246 17 C 0.118 3.882 18 C -0.101 4.101 19 H 0.088 0.912 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.026 0.974 47 H 0.022 0.978 48 H 0.384 0.616 49 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.199 -2.541 30.843 31.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.013 4.013 5 N -0.329 5.329 6 C 0.406 3.594 7 O -0.380 6.380 8 C -0.149 4.149 9 N -0.128 5.128 10 N -0.052 5.052 11 N -0.041 5.041 12 C 0.096 3.904 13 C -0.219 4.219 14 C -0.211 4.211 15 C -0.219 4.219 16 N -0.099 5.099 17 C -0.003 4.003 18 C -0.120 4.120 19 H 0.107 0.893 20 C 0.038 3.962 21 N -0.377 5.377 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.044 0.956 47 H 0.040 0.960 48 H 0.218 0.782 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.924 -2.736 31.033 31.213 hybrid contribution 0.458 0.015 -1.261 1.342 sum -1.466 -2.721 29.772 29.932 Atomic orbital electron populations 1.21727 0.93654 1.02240 1.02012 1.22255 0.96537 0.99519 0.93519 0.89408 1.22285 0.87251 0.94928 0.96875 1.48213 1.29619 1.42914 1.12178 1.15658 0.82697 0.80128 0.80953 1.90884 1.27963 1.47979 1.71168 1.25276 0.93802 0.97550 0.98295 1.76238 1.18888 1.20380 0.97274 1.78869 1.07643 1.04506 1.14205 1.50746 1.16441 1.27561 1.09314 1.21524 0.97852 0.92583 0.78447 1.22264 0.92694 1.03147 1.03794 1.22105 0.99159 1.03905 0.95898 1.22267 1.04233 0.90820 1.04614 1.75005 1.21787 1.20792 0.92313 1.22539 0.98089 1.02126 0.77543 1.22733 0.94970 0.99449 0.94850 0.89344 1.20587 0.97377 0.92705 0.85542 1.42375 1.82620 1.07537 1.05208 1.19203 1.38656 0.92688 0.86550 0.91162 1.24754 1.02518 0.95593 0.98134 1.69661 1.53747 1.04331 1.30293 0.86192 0.77866 0.78051 0.84087 1.21740 1.21828 1.20795 0.92550 0.91665 0.92454 0.90536 0.90823 0.91287 0.88928 0.90153 0.90473 0.89072 0.90490 0.90140 0.88931 0.91243 0.90401 0.89337 0.95618 0.95996 0.78210 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.13 37.16 0.34 -1.16 16 2 C -0.10 -1.22 3.01 -88.79 -0.27 -1.49 16 3 H 0.09 1.03 8.04 -51.93 -0.42 0.61 16 4 C 0.11 1.39 5.14 -3.06 -0.02 1.37 16 5 N -0.60 -9.24 3.32 -171.43 -0.57 -9.81 16 6 C 0.62 10.65 7.87 -12.26 -0.10 10.55 16 7 O -0.51 -10.31 17.35 5.33 0.09 -10.21 16 8 C 0.13 2.03 7.97 -156.25 -1.24 0.79 16 9 N -0.25 -3.45 10.09 32.10 0.32 -3.13 16 10 N -0.06 -0.71 12.21 60.35 0.74 0.03 16 11 N -0.13 -1.35 3.72 0.53 0.00 -1.35 16 12 C 0.18 1.10 1.30 -131.81 -0.17 0.93 16 13 C -0.16 -0.80 8.66 37.16 0.32 -0.48 16 14 C -0.15 -0.62 7.90 37.16 0.29 -0.33 16 15 C -0.16 -0.82 8.66 37.16 0.32 -0.50 16 16 N -0.25 -3.40 11.85 32.11 0.38 -3.02 16 17 C 0.12 1.98 6.33 -2.41 -0.02 1.97 16 18 C -0.10 -1.59 2.51 -88.35 -0.22 -1.82 16 19 H 0.09 1.48 8.04 -51.93 -0.42 1.06 16 20 C 0.17 3.21 5.72 -4.04 -0.02 3.19 16 21 N -0.73 -18.41 5.55 -59.91 -0.33 -18.74 16 22 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 25 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 26 Si 0.91 22.65 29.55 -169.99 -5.02 17.63 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 33 H 0.08 0.95 7.34 -51.93 -0.38 0.57 16 34 H 0.07 0.88 7.77 -51.93 -0.40 0.48 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 40 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 1.32 7.91 -51.93 -0.41 0.91 16 45 H 0.09 1.69 8.03 -51.93 -0.42 1.28 16 46 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.02 0.43 7.96 -51.93 -0.41 0.02 16 48 H 0.38 10.24 7.67 -40.82 -0.31 9.93 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 402.43 15.07 6.06 6.06 Total: -1.00 -34.60 402.43 -6.84 -41.44 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -8.21 Total: 3.31 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.03 Total: 5.65 kcal Atomic # 7 Polarization: -65.15 SS G_CDS: 1.27 Total: -63.89 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.60 -6.84 -41.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325508733.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.917 kcal (2) G-P(sol) polarization free energy of solvation -34.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds