Wall clock time and date at job start Tue Mar 31 2020 21:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.63932 * 2 1 4 4 C 1.54325 * 110.72031 * 123.13990 * 2 1 3 5 5 N 1.47022 * 107.26808 * 140.55789 * 4 2 1 6 6 C 1.34777 * 125.64649 * 181.01926 * 5 4 2 7 7 O 1.21543 * 119.99917 * 180.02562 * 6 5 4 8 8 C 1.48007 * 120.00113 * 0.30106 * 6 5 4 9 9 N 1.34187 * 126.69428 * 359.41365 * 8 6 5 10 10 N 1.28983 * 107.24774 * 179.83087 * 9 8 6 11 11 N 1.28714 * 108.98952 * 0.43302 * 10 9 8 12 12 C 1.46510 * 125.32116 * 179.72157 * 11 10 9 13 13 C 1.53002 * 109.47164 * 239.99846 * 12 11 10 14 14 C 1.52998 * 109.46984 * 359.97438 * 12 11 10 15 15 C 1.53000 * 109.46947 * 120.00180 * 12 11 10 16 16 N 1.28875 * 109.36162 * 359.72189 * 11 10 9 17 17 C 1.47427 * 108.70606 * 1.28821 * 5 4 2 18 18 C 1.55122 * 104.71913 * 335.55290 * 17 5 4 19 19 H 1.09001 * 111.22820 * 279.17858 * 18 17 5 20 20 C 1.53004 * 110.90775 * 155.27691 * 18 17 5 21 21 N 1.46498 * 109.47095 * 72.97497 * 20 18 17 22 22 C 1.36935 * 120.00025 * 180.02562 * 21 20 18 23 23 H 1.07997 * 120.00088 * 359.97438 * 22 21 20 24 24 C 1.38813 * 120.00338 * 179.97438 * 22 21 20 25 25 N 1.31626 * 119.99799 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00196 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46945 * 90.00040 * 26 24 22 28 28 H 1.48505 * 109.46937 * 209.99736 * 26 24 22 29 29 H 1.48489 * 109.47107 * 329.99969 * 26 24 22 30 30 H 1.08993 * 109.47001 * 298.31298 * 1 2 3 31 31 H 1.08994 * 109.47220 * 58.31557 * 1 2 3 32 32 H 1.09000 * 109.46731 * 178.31073 * 1 2 3 33 33 H 1.08992 * 109.88157 * 21.13997 * 4 2 1 34 34 H 1.09001 * 110.01111 * 260.04280 * 4 2 1 35 35 H 1.09005 * 109.46377 * 59.99906 * 13 12 11 36 36 H 1.08993 * 109.47169 * 179.97438 * 13 12 11 37 37 H 1.08998 * 109.47138 * 300.00268 * 13 12 11 38 38 H 1.09002 * 109.46997 * 59.99977 * 14 12 11 39 39 H 1.09004 * 109.46837 * 179.97438 * 14 12 11 40 40 H 1.08997 * 109.47349 * 300.00001 * 14 12 11 41 41 H 1.08998 * 109.47255 * 59.99792 * 15 12 11 42 42 H 1.09004 * 109.46855 * 179.97438 * 15 12 11 43 43 H 1.09002 * 109.47008 * 300.00007 * 15 12 11 44 44 H 1.09001 * 110.36625 * 94.47869 * 17 5 4 45 45 H 1.08998 * 110.36643 * 216.80556 * 17 5 4 46 46 H 1.09002 * 109.47013 * 192.97377 * 20 18 17 47 47 H 1.09002 * 109.47092 * 312.97260 * 20 18 17 48 48 H 0.97004 * 120.00319 * 359.97438 * 21 20 18 49 49 H 0.96992 * 120.00112 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0760 -0.7891 1.2086 5 7 3.2445 -1.5494 0.7416 6 6 3.9924 -2.3809 1.4938 7 8 4.9405 -2.9596 1.0003 8 6 3.6555 -2.5941 2.9192 9 7 2.6487 -2.0241 3.5991 10 7 2.6987 -2.4756 4.8063 11 7 3.6911 -3.2888 4.9086 12 6 4.0795 -4.0021 6.1280 13 6 5.5066 -3.6098 6.5158 14 6 3.1228 -3.6307 7.2627 15 6 4.0151 -5.5103 5.8789 16 7 4.2899 -3.3774 3.7708 17 6 3.4666 -1.2466 -0.6840 18 6 2.0790 -0.7975 -1.2124 19 1 1.4448 -1.6556 -1.4350 20 6 2.2277 0.1039 -2.4398 21 7 2.6328 -0.7041 -3.5928 22 6 2.8289 -0.1094 -4.8105 23 1 2.6846 0.9552 -4.9211 24 6 3.2132 -0.8748 -5.9029 25 7 3.3896 -2.1722 -5.7681 26 14 3.4801 -0.0636 -7.5643 27 1 4.8962 0.3677 -7.6828 28 1 3.1658 -1.0329 -8.6446 29 1 2.5906 1.1191 -7.6862 30 1 -0.3633 0.4874 0.9047 31 1 -0.3633 0.5397 -0.8744 32 1 -0.3633 -1.0272 -0.0303 33 1 1.3130 -1.4731 1.5801 34 1 2.3736 -0.1009 1.9998 35 1 5.5524 -2.5352 6.6931 36 1 5.7954 -4.1401 7.4231 37 1 6.1884 -3.8740 5.7074 38 1 2.1059 -3.9099 6.9866 39 1 3.4115 -4.1618 8.1698 40 1 3.1691 -2.5562 7.4400 41 1 4.6969 -5.7745 5.0706 42 1 4.3045 -6.0410 6.7860 43 1 2.9984 -5.7898 5.6026 44 1 4.1947 -0.4427 -0.7921 45 1 3.8032 -2.1381 -1.2132 46 1 1.2747 0.5883 -2.6524 47 1 2.9853 0.8627 -2.2437 48 1 2.7628 -1.6602 -3.4934 49 1 3.6585 -2.7070 -6.5313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325508733.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:13 Heat of formation + Delta-G solvation = 81.733157 kcal Electronic energy + Delta-G solvation = -29354.906500 eV Core-core repulsion = 25354.696916 eV Total energy + Delta-G solvation = -4000.209584 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.63409 -41.34993 -39.27069 -38.61787 -36.49346 -34.79391 -34.41400 -33.48726 -33.05115 -30.79588 -28.68912 -28.55236 -27.90203 -27.26069 -25.93896 -25.61932 -24.61370 -22.59162 -21.87471 -21.22707 -21.01560 -19.21156 -18.66398 -18.54589 -17.73210 -17.58838 -16.85007 -16.55509 -15.88975 -15.42364 -15.32906 -15.23675 -15.17151 -15.09756 -14.91407 -14.34744 -14.21506 -14.07630 -13.52795 -13.49928 -13.45742 -13.33775 -13.26326 -13.22716 -12.91910 -12.85717 -12.76575 -12.65123 -12.47527 -12.35726 -12.14057 -12.13923 -12.11103 -11.91513 -11.81470 -11.66909 -11.54021 -11.47995 -11.34732 -10.91411 -9.90650 -8.97163 -7.92302 -5.21247 -0.21734 0.22255 0.59301 1.47286 1.48517 1.50732 1.58893 1.77748 2.57217 2.62254 2.88080 3.37997 3.42759 3.47239 3.51915 3.56907 3.63316 3.77487 3.89973 4.16550 4.24411 4.27806 4.39678 4.41057 4.51276 4.52930 4.53564 4.57544 4.59235 4.70139 4.72581 4.72596 4.82312 4.84481 4.87303 5.01132 5.05285 5.08003 5.09772 5.16276 5.20131 5.22316 5.25685 5.38195 5.51554 5.54871 6.12921 6.29396 6.60371 7.00999 7.35601 8.11924 8.33608 9.31412 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.022779 B = 0.002224 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.895436 B =12586.270207 C =13437.446372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.085 4.085 3 H 0.103 0.897 4 C 0.112 3.888 5 N -0.592 5.592 6 C 0.621 3.379 7 O -0.553 6.553 8 C 0.118 3.882 9 N -0.256 5.256 10 N -0.055 5.055 11 N -0.108 5.108 12 C 0.159 3.841 13 C -0.158 4.158 14 C -0.149 4.149 15 C -0.159 4.159 16 N -0.260 5.260 17 C 0.121 3.879 18 C -0.090 4.090 19 H 0.079 0.921 20 C 0.166 3.834 21 N -0.748 5.748 22 C -0.240 4.240 23 H 0.080 0.920 24 C -0.080 4.080 25 N -0.972 5.972 26 Si 0.974 3.026 27 H -0.289 1.289 28 H -0.298 1.298 29 H -0.266 1.266 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.130 0.870 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.130 0.870 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.038 0.962 47 H 0.028 0.972 48 H 0.372 0.628 49 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 -1.314 33.559 33.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.105 4.105 3 H 0.121 0.879 4 C -0.010 4.010 5 N -0.324 5.324 6 C 0.404 3.596 7 O -0.429 6.429 8 C -0.165 4.165 9 N -0.131 5.131 10 N -0.048 5.048 11 N -0.025 5.025 12 C 0.081 3.919 13 C -0.216 4.216 14 C -0.206 4.206 15 C -0.217 4.217 16 N -0.114 5.114 17 C -0.001 4.001 18 C -0.110 4.110 19 H 0.097 0.903 20 C 0.040 3.960 21 N -0.390 5.390 22 C -0.372 4.372 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.803 3.197 27 H -0.216 1.216 28 H -0.225 1.225 29 H -0.191 1.191 30 H 0.100 0.900 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.148 0.852 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.146 0.854 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.148 0.852 43 H 0.081 0.919 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.046 0.954 48 H 0.204 0.796 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.086 -1.443 33.798 33.970 hybrid contribution 0.805 -0.388 -1.913 2.111 sum -2.281 -1.831 31.886 32.020 Atomic orbital electron populations 1.21722 0.91944 1.02412 1.03224 1.22255 0.97813 0.99470 0.90924 0.87888 1.22455 0.86217 0.95000 0.97293 1.48245 1.30048 1.42605 1.11470 1.15924 0.82172 0.79648 0.81835 1.90846 1.29919 1.49762 1.72334 1.24824 0.95036 0.99039 0.97590 1.76186 1.18545 1.20658 0.97662 1.78792 1.07913 1.04642 1.13421 1.51330 1.15206 1.26469 1.09481 1.22243 0.99313 0.92970 0.77410 1.22313 0.91262 1.03327 1.04699 1.22179 0.98221 1.04116 0.96134 1.22317 1.03389 0.90189 1.05786 1.74971 1.22330 1.20831 0.93255 1.22367 0.98735 1.00579 0.78402 1.22550 0.94341 0.99125 0.94964 0.90307 1.20740 0.97561 0.92750 0.84951 1.42627 1.82712 1.07475 1.06194 1.19655 1.36791 0.93167 0.87580 0.90194 1.25607 1.03491 0.96194 1.01932 1.69834 1.55708 1.05841 1.30916 0.85127 0.77775 0.77343 0.79450 1.21649 1.22453 1.19050 0.90036 0.91822 0.92781 0.89856 0.89292 0.91803 0.85176 0.92095 0.91072 0.85430 0.90959 0.92119 0.85157 0.91927 0.90621 0.92575 0.94455 0.95399 0.79649 0.94164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.13 71.98 0.66 -1.92 16 2 C -0.09 -1.94 3.01 -9.61 -0.03 -1.97 16 3 H 0.10 2.10 8.04 -2.39 -0.02 2.08 16 4 C 0.11 2.68 5.14 86.73 0.45 3.12 16 5 N -0.59 -18.67 3.32 -814.57 -2.71 -21.38 16 6 C 0.62 22.03 7.87 86.83 0.68 22.71 16 7 O -0.55 -23.82 17.35 -3.85 -0.07 -23.89 16 8 C 0.12 3.61 7.97 137.15 1.09 4.71 16 9 N -0.26 -6.79 10.09 -52.37 -0.53 -7.32 16 10 N -0.06 -1.26 12.21 37.02 0.45 -0.81 16 11 N -0.11 -2.24 3.72 -152.24 -0.57 -2.81 16 12 C 0.16 1.69 1.30 3.60 0.00 1.69 16 13 C -0.16 -1.27 8.66 71.98 0.62 -0.64 16 14 C -0.15 -0.78 7.90 71.98 0.57 -0.21 16 15 C -0.16 -1.34 8.66 71.98 0.62 -0.71 16 16 N -0.26 -7.27 11.85 -52.32 -0.62 -7.89 16 17 C 0.12 4.22 6.33 86.93 0.55 4.77 16 18 C -0.09 -2.85 2.51 -9.33 -0.02 -2.87 16 19 H 0.08 2.67 8.04 -2.39 -0.02 2.65 16 20 C 0.17 6.35 5.72 86.38 0.49 6.84 16 21 N -0.75 -38.10 5.55 -343.45 -1.91 -40.01 16 22 C -0.24 -13.47 9.99 84.03 0.84 -12.63 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 24 C -0.08 -4.71 5.50 84.86 0.47 -4.24 16 25 N -0.97 -61.27 13.06 21.65 0.28 -60.98 16 26 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 27 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 28 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 29 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 33 H 0.08 1.93 7.34 -2.39 -0.02 1.92 16 34 H 0.09 1.93 7.77 -2.39 -0.02 1.91 16 35 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.13 -0.23 8.14 -2.38 -0.02 -0.25 16 40 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.13 0.10 8.14 -2.38 -0.02 0.08 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.08 2.65 7.91 -2.39 -0.02 2.63 16 45 H 0.06 2.31 8.03 -2.39 -0.02 2.30 16 46 H 0.04 1.37 8.14 -2.39 -0.02 1.36 16 47 H 0.03 1.06 7.96 -2.39 -0.02 1.04 16 48 H 0.37 20.58 7.67 -92.71 -0.71 19.87 16 49 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -77.75 402.43 3.60 -74.15 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: 0.23 Total: 23.28 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 7.00 Total: 18.65 kcal Atomic # 7 Polarization: -135.61 SS G_CDS: -5.59 Total: -141.20 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.07 Total: -23.89 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -77.75 3.60 -74.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325508733.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.885 kcal (2) G-P(sol) polarization free energy of solvation -77.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds