Wall clock time and date at job start Tue Mar 31 2020 19:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47179 * 89.99957 * 5 4 3 7 7 O 1.21287 * 120.00120 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00242 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00240 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47317 * 180.02562 * 9 8 6 11 11 N 1.46896 * 109.47190 * 180.02562 * 10 9 8 12 12 C 1.46844 * 110.99926 * 45.79009 * 11 10 9 13 13 C 1.53041 * 109.52218 * 185.84036 * 12 11 10 14 14 C 1.53117 * 109.27808 * 300.81745 * 13 12 11 15 15 N 1.46501 * 109.57797 * 177.59126 * 14 13 12 16 16 C 1.36940 * 119.99964 * 85.28402 * 15 14 13 17 17 H 1.07994 * 119.99921 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99638 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99311 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47514 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46878 * 120.00178 * 20 18 16 23 23 H 1.48500 * 109.46610 * 239.99650 * 20 18 16 24 24 C 1.53119 * 109.15938 * 57.65650 * 14 13 12 25 25 C 1.46854 * 111.00188 * 169.99832 * 11 10 9 26 26 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 27 27 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 28 28 H 0.96998 * 126.82131 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 30 30 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 31 31 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 32 32 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 33 33 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 34 34 H 0.97002 * 120.00111 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.46776 * 300.00824 * 9 8 6 36 36 H 1.09005 * 109.46959 * 60.00318 * 9 8 6 37 37 H 1.09004 * 109.46766 * 300.00256 * 10 9 8 38 38 H 1.08999 * 109.46903 * 59.99876 * 10 9 8 39 39 H 1.09001 * 109.46539 * 305.85317 * 12 11 10 40 40 H 1.08996 * 109.46612 * 65.82323 * 12 11 10 41 41 H 1.09002 * 109.50542 * 180.88187 * 13 12 11 42 42 H 1.08996 * 109.50687 * 60.76040 * 13 12 11 43 43 H 1.09004 * 109.52504 * 297.75175 * 14 13 12 44 44 H 0.96999 * 119.99938 * 265.29476 * 15 14 13 45 45 H 0.97003 * 119.99337 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.50477 * 182.40244 * 24 14 13 47 47 H 1.09003 * 109.50536 * 62.28357 * 24 14 13 48 48 H 1.09003 * 109.45798 * 294.18164 * 25 11 10 49 49 H 1.09003 * 109.45605 * 54.15225 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 6 5.1318 1.9357 1.4193 7 8 4.5144 1.4465 2.3416 8 7 6.1714 2.7573 1.6650 9 6 6.5548 3.0610 3.0460 10 6 7.7548 4.0100 3.0453 11 7 8.1396 4.3140 4.4300 12 6 8.1802 3.0931 5.2449 13 6 8.4404 3.4626 6.7071 14 6 9.7718 4.2118 6.8099 15 7 9.9999 4.6191 8.1986 16 6 10.5802 3.7477 9.0812 17 1 10.8701 2.7603 8.7535 18 6 10.7958 4.1335 10.3971 19 7 10.4429 5.3370 10.7963 20 14 11.5882 2.9449 11.6009 21 1 11.8893 1.6663 10.9084 22 1 12.8474 3.5346 12.1223 23 1 10.6571 2.6891 12.7291 24 6 9.7206 5.4528 5.9145 25 6 9.4233 5.0257 4.4754 26 7 3.6194 -0.6167 -0.0004 27 7 2.2964 -1.0881 -0.0005 28 1 2.0093 -2.0146 -0.0006 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3635 0.8897 0.5142 32 1 5.5739 1.1510 -0.5154 33 1 4.4697 2.5470 -0.5151 34 1 6.6655 3.1483 0.9274 35 1 5.7179 3.5342 3.5596 36 1 6.8216 2.1377 3.5603 37 1 8.5918 3.5370 2.5314 38 1 7.4876 4.9332 2.5310 39 1 7.2260 2.5720 5.1663 40 1 8.9790 2.4437 4.8868 41 1 8.4860 2.5552 7.3092 42 1 7.6347 4.1008 7.0701 43 1 10.5825 3.5603 6.4836 44 1 9.7397 5.5060 8.4928 45 1 10.5933 5.6064 11.7159 46 1 10.6808 5.9673 5.9504 47 1 8.9350 6.1223 6.2650 48 1 10.2163 4.3672 4.1208 49 1 9.3719 5.9083 3.8379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325795169.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:19 Heat of formation + Delta-G solvation = 61.902486 kcal Electronic energy + Delta-G solvation = -27969.789664 eV Core-core repulsion = 23968.720158 eV Total energy + Delta-G solvation = -4001.069506 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.53093 -39.92945 -38.83042 -35.81107 -34.39874 -34.06638 -32.75263 -32.31137 -30.84826 -30.41487 -29.61708 -28.27711 -27.30595 -24.40203 -23.27762 -22.51013 -21.89854 -21.32066 -21.01289 -20.29770 -19.27502 -18.29444 -17.49886 -17.03908 -16.52233 -15.97403 -15.88760 -15.49501 -15.07208 -14.64276 -14.54788 -14.42155 -13.98355 -13.90489 -13.68676 -13.48993 -13.30226 -13.26593 -13.20849 -12.89733 -12.52724 -12.37279 -12.21087 -11.84988 -11.56886 -11.47503 -11.14621 -10.86284 -10.72435 -10.58541 -10.53543 -10.40824 -10.21374 -10.15004 -10.12131 -9.79505 -9.68356 -9.54748 -9.28764 -8.82994 -8.20432 -6.90040 -5.72427 -3.00594 1.19461 2.20418 2.34750 2.39465 2.97031 3.45726 3.51362 3.53523 3.53666 4.07720 4.08932 4.32547 4.52333 4.62380 4.71502 4.74331 4.87321 4.90876 4.92497 5.18875 5.23202 5.27337 5.28310 5.37905 5.46536 5.62214 5.65187 5.71738 5.77117 5.82057 5.84759 5.93128 6.00652 6.08454 6.13798 6.18970 6.32096 6.52399 6.55507 6.64521 6.70452 6.92436 7.12205 7.18815 7.26741 7.29932 7.70758 7.74372 7.96032 8.46498 9.57559 10.16640 10.51540 11.50412 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.001671 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.623265 B =16750.592360 C =17623.596865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.285 3.715 3 N -0.531 5.531 4 C 0.249 3.751 5 C -0.048 4.048 6 C 0.521 3.479 7 O -0.526 6.526 8 N -0.728 5.728 9 C 0.115 3.885 10 C 0.046 3.954 11 N -0.532 5.532 12 C 0.050 3.950 13 C -0.132 4.132 14 C 0.177 3.823 15 N -0.724 5.724 16 C -0.236 4.236 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.121 4.121 25 C 0.064 3.936 26 N -0.304 5.304 27 N -0.481 5.481 28 H 0.440 0.560 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.401 0.599 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.037 0.963 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.041 0.959 44 H 0.384 0.616 45 H 0.254 0.746 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.031 0.969 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.281 -7.966 -29.687 34.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.006 3.994 3 N -0.260 5.260 4 C -0.034 4.034 5 C -0.090 4.090 6 C 0.305 3.695 7 O -0.401 6.401 8 N -0.381 5.381 9 C -0.009 4.009 10 C -0.082 4.082 11 N -0.257 5.257 12 C -0.079 4.079 13 C -0.173 4.173 14 C 0.067 3.933 15 N -0.365 5.365 16 C -0.368 4.368 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.736 3.264 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.160 4.160 25 C -0.064 4.064 26 N -0.133 5.133 27 N -0.200 5.200 28 H 0.286 0.714 29 H 0.111 0.889 30 H 0.102 0.898 31 H 0.118 0.882 32 H 0.137 0.863 33 H 0.142 0.858 34 H 0.235 0.765 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.218 0.782 45 H 0.064 0.936 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.049 0.951 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.397 -8.172 -28.689 34.040 hybrid contribution 0.850 -1.377 0.202 1.631 sum -15.547 -9.550 -28.487 33.829 Atomic orbital electron populations 1.20410 0.83515 1.05265 1.04523 1.24381 0.96660 0.82710 0.95614 1.70297 1.01207 1.29589 1.24942 1.23218 0.92653 0.89744 0.97812 1.19876 0.93935 0.99078 0.96155 1.20148 0.79997 0.78748 0.90635 1.90771 1.52419 1.50866 1.46076 1.45842 1.33445 1.49501 1.09337 1.21566 0.97837 0.99422 0.82032 1.22218 0.95887 0.98800 0.91339 1.61985 1.31518 1.23933 1.08277 1.22315 1.00219 0.90184 0.95138 1.22312 1.00885 1.01462 0.92616 1.20239 0.93834 0.93189 0.86017 1.42427 1.72933 1.16415 1.04681 1.19294 1.31335 0.95591 0.90539 0.91247 1.24733 1.02173 0.96823 0.97339 1.69675 1.53365 1.18298 1.16794 0.86144 0.78668 0.80107 0.81454 1.20628 1.21930 1.21918 1.21858 1.01609 0.99328 0.93188 1.22057 0.88519 0.97459 0.98338 1.77973 0.96843 1.12167 1.26301 1.47928 1.04194 1.10087 1.57742 0.71413 0.88933 0.89779 0.88185 0.86344 0.85827 0.76536 0.90273 0.90821 0.94493 0.90209 0.90862 0.95282 0.91745 0.91645 0.94112 0.78246 0.93624 0.91481 0.91248 0.95056 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.26 10.51 36.00 0.38 0.12 16 2 C 0.28 2.36 8.24 -155.70 -1.28 1.07 16 3 N -0.53 -6.04 11.19 -8.16 -0.09 -6.13 16 4 C 0.25 2.82 6.63 -156.85 -1.04 1.78 16 5 C -0.05 -0.38 6.33 -29.03 -0.18 -0.56 16 6 C 0.52 5.72 7.82 -10.99 -0.09 5.63 16 7 O -0.53 -8.50 16.03 5.55 0.09 -8.42 16 8 N -0.73 -6.15 5.56 -60.29 -0.33 -6.49 16 9 C 0.11 1.24 4.92 -4.04 -0.02 1.22 16 10 C 0.05 0.46 5.39 -3.83 -0.02 0.44 16 11 N -0.53 -7.12 4.81 -234.67 -1.13 -8.25 16 12 C 0.05 0.74 4.85 -3.83 -0.02 0.72 16 13 C -0.13 -2.46 5.68 -26.65 -0.15 -2.61 16 14 C 0.18 3.59 2.84 -67.81 -0.19 3.40 16 15 N -0.72 -18.49 5.13 -53.30 -0.27 -18.76 16 16 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.60 13.06 55.49 0.72 -27.87 16 20 Si 0.90 22.77 29.55 -169.99 -5.02 17.74 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 24 C -0.12 -2.04 5.57 -26.65 -0.15 -2.19 16 25 C 0.06 0.87 5.42 -3.83 -0.02 0.84 16 26 N -0.30 -3.50 12.80 32.42 0.41 -3.08 16 27 N -0.48 -3.91 7.45 32.62 0.24 -3.66 16 28 H 0.44 1.87 8.96 -182.33 -1.63 0.23 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 30 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.12 0.65 8.14 -51.94 -0.42 0.23 16 34 H 0.40 1.92 8.47 -40.82 -0.35 1.57 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.92 6.21 -51.93 -0.32 0.59 16 37 H 0.04 0.34 8.08 -51.93 -0.42 -0.08 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.05 5.81 -51.93 -0.30 0.75 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.04 0.85 8.08 -51.93 -0.42 0.43 16 44 H 0.38 10.43 7.80 -40.82 -0.32 10.11 16 45 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 46 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.81 8.12 -51.93 -0.42 0.39 16 LS Contribution 400.04 15.07 6.03 6.03 Total: -1.00 -38.67 400.04 -11.61 -50.28 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: -9.23 Total: 6.10 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -3.03 Total: 2.52 kcal Atomic # 7 Polarization: -73.81 SS G_CDS: -0.44 Total: -74.25 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.09 Total: -8.42 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -38.67 -11.61 -50.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325795169.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.182 kcal (2) G-P(sol) polarization free energy of solvation -38.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds