Wall clock time and date at job start Tue Mar 31 2020 19:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30834 * 125.95694 * 2 1 4 4 C 1.33241 * 109.82716 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52704 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47179 * 89.99957 * 5 4 3 7 7 O 1.21287 * 120.00120 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00242 * 179.97438 * 6 5 4 9 9 C 1.46505 * 120.00240 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47317 * 180.02562 * 9 8 6 11 11 N 1.46896 * 109.47190 * 180.02562 * 10 9 8 12 12 C 1.46844 * 110.99926 * 45.79009 * 11 10 9 13 13 C 1.53041 * 109.52218 * 185.84036 * 12 11 10 14 14 C 1.53117 * 109.27808 * 300.81745 * 13 12 11 15 15 N 1.46501 * 109.57797 * 177.59126 * 14 13 12 16 16 C 1.36940 * 119.99964 * 85.28402 * 15 14 13 17 17 H 1.07994 * 119.99921 * 0.02562 * 16 15 14 18 18 C 1.38816 * 119.99638 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00012 * 359.97438 * 18 16 15 20 20 Si 1.86802 * 119.99311 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47514 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.46878 * 120.00178 * 20 18 16 23 23 H 1.48500 * 109.46610 * 239.99650 * 20 18 16 24 24 C 1.53119 * 109.15938 * 57.65650 * 14 13 12 25 25 C 1.46854 * 111.00188 * 169.99832 * 11 10 9 26 26 N 1.30718 * 108.94820 * 359.97438 * 4 3 2 27 27 N 1.34428 * 125.96273 * 180.02562 * 2 1 3 28 28 H 0.96998 * 126.82131 * 359.97438 * 27 2 1 29 29 H 1.09003 * 109.47179 * 89.97785 * 1 2 3 30 30 H 1.09004 * 109.47263 * 209.97548 * 1 2 3 31 31 H 1.09001 * 109.47979 * 329.97713 * 1 2 3 32 32 H 1.08999 * 109.46976 * 209.99632 * 5 4 3 33 33 H 1.08988 * 109.47287 * 330.00039 * 5 4 3 34 34 H 0.97002 * 120.00111 * 0.02562 * 8 6 5 35 35 H 1.09000 * 109.46776 * 300.00824 * 9 8 6 36 36 H 1.09005 * 109.46959 * 60.00318 * 9 8 6 37 37 H 1.09004 * 109.46766 * 300.00256 * 10 9 8 38 38 H 1.08999 * 109.46903 * 59.99876 * 10 9 8 39 39 H 1.09001 * 109.46539 * 305.85317 * 12 11 10 40 40 H 1.08996 * 109.46612 * 65.82323 * 12 11 10 41 41 H 1.09002 * 109.50542 * 180.88187 * 13 12 11 42 42 H 1.08996 * 109.50687 * 60.76040 * 13 12 11 43 43 H 1.09004 * 109.52504 * 297.75175 * 14 13 12 44 44 H 0.96999 * 119.99938 * 265.29476 * 15 14 13 45 45 H 0.97003 * 119.99337 * 179.97438 * 19 18 16 46 46 H 1.08996 * 109.50477 * 182.40244 * 24 14 13 47 47 H 1.09003 * 109.50536 * 62.28357 * 24 14 13 48 48 H 1.09003 * 109.45798 * 294.18164 * 25 11 10 49 49 H 1.09003 * 109.45605 * 54.15225 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2752 1.0590 0.0000 4 6 3.5551 0.6889 -0.0006 5 6 4.7371 1.6238 -0.0013 6 6 5.1318 1.9357 1.4193 7 8 4.5144 1.4465 2.3416 8 7 6.1714 2.7573 1.6650 9 6 6.5548 3.0610 3.0460 10 6 7.7548 4.0100 3.0453 11 7 8.1396 4.3140 4.4300 12 6 8.1802 3.0931 5.2449 13 6 8.4404 3.4626 6.7071 14 6 9.7718 4.2118 6.8099 15 7 9.9999 4.6191 8.1986 16 6 10.5802 3.7477 9.0812 17 1 10.8701 2.7603 8.7535 18 6 10.7958 4.1335 10.3971 19 7 10.4429 5.3370 10.7963 20 14 11.5882 2.9449 11.6009 21 1 11.8893 1.6663 10.9084 22 1 12.8474 3.5346 12.1223 23 1 10.6571 2.6891 12.7291 24 6 9.7206 5.4528 5.9145 25 6 9.4233 5.0257 4.4754 26 7 3.6194 -0.6167 -0.0004 27 7 2.2964 -1.0881 -0.0005 28 1 2.0093 -2.0146 -0.0006 29 1 -0.3634 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5135 31 1 -0.3635 0.8897 0.5142 32 1 5.5739 1.1510 -0.5154 33 1 4.4697 2.5470 -0.5151 34 1 6.6655 3.1483 0.9274 35 1 5.7179 3.5342 3.5596 36 1 6.8216 2.1377 3.5603 37 1 8.5918 3.5370 2.5314 38 1 7.4876 4.9332 2.5310 39 1 7.2260 2.5720 5.1663 40 1 8.9790 2.4437 4.8868 41 1 8.4860 2.5552 7.3092 42 1 7.6347 4.1008 7.0701 43 1 10.5825 3.5603 6.4836 44 1 9.7397 5.5060 8.4928 45 1 10.5933 5.6064 11.7159 46 1 10.6808 5.9673 5.9504 47 1 8.9350 6.1223 6.2650 48 1 10.2163 4.3672 4.1208 49 1 9.3719 5.9083 3.8379 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325795169.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:46:18 Heat of formation + Delta-G solvation = 30.548389 kcal Electronic energy + Delta-G solvation = -27971.149280 eV Core-core repulsion = 23968.720158 eV Total energy + Delta-G solvation = -4002.429122 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.18779 -40.82974 -40.03221 -37.14136 -35.74098 -34.71486 -34.00682 -33.37435 -32.02130 -31.61896 -30.90449 -29.02338 -28.29310 -26.09400 -24.68675 -23.64687 -22.87372 -22.17210 -22.01038 -21.08430 -20.71745 -19.10204 -18.92839 -18.28638 -17.50767 -16.85281 -16.80946 -16.54415 -16.27798 -15.90687 -15.59794 -15.39110 -15.30778 -15.22754 -14.77082 -14.55384 -14.51790 -14.16049 -13.98134 -13.65425 -13.62948 -13.17274 -13.10768 -13.00162 -12.89367 -12.76468 -12.65348 -12.48037 -12.21492 -12.13094 -12.03366 -11.76500 -11.51983 -11.35072 -11.16665 -11.13234 -10.97136 -10.85959 -10.48610 -10.13703 -9.24199 -8.99541 -7.94698 -5.22837 0.54263 1.45280 1.46329 1.56118 1.58052 1.59869 1.72149 2.22853 2.55165 2.97699 3.08685 3.38134 3.52047 3.76910 3.80784 3.82943 3.96214 4.03721 4.09687 4.20797 4.34064 4.37475 4.40027 4.42169 4.51716 4.56069 4.69469 4.70778 4.74693 4.75650 4.88817 4.94829 4.97940 4.99099 5.04516 5.12698 5.19966 5.21973 5.34466 5.38473 5.44298 5.49404 5.60593 6.10907 6.17979 6.18196 6.28366 6.51801 7.04265 7.22445 7.33487 8.10866 8.34156 9.29117 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.019526 B = 0.001671 C = 0.001588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.623265 B =16750.592360 C =17623.596865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.285 3.715 3 N -0.569 5.569 4 C 0.232 3.768 5 C -0.043 4.043 6 C 0.519 3.481 7 O -0.586 6.586 8 N -0.708 5.708 9 C 0.121 3.879 10 C 0.055 3.945 11 N -0.545 5.545 12 C 0.062 3.938 13 C -0.124 4.124 14 C 0.171 3.829 15 N -0.738 5.738 16 C -0.238 4.238 17 H 0.073 0.927 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.971 3.029 21 H -0.267 1.267 22 H -0.291 1.291 23 H -0.295 1.295 24 C -0.114 4.114 25 C 0.072 3.928 26 N -0.340 5.340 27 N -0.476 5.476 28 H 0.454 0.546 29 H 0.115 0.885 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.422 0.578 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.042 0.958 42 H 0.046 0.954 43 H 0.036 0.964 44 H 0.372 0.628 45 H 0.250 0.750 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.041 0.959 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.343 -8.474 -32.595 37.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.007 3.993 3 N -0.299 5.299 4 C -0.051 4.051 5 C -0.084 4.084 6 C 0.305 3.695 7 O -0.466 6.466 8 N -0.362 5.362 9 C -0.003 4.003 10 C -0.073 4.073 11 N -0.271 5.271 12 C -0.066 4.066 13 C -0.164 4.164 14 C 0.063 3.937 15 N -0.377 5.377 16 C -0.370 4.370 17 H 0.091 0.909 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.800 3.200 21 H -0.192 1.192 22 H -0.219 1.219 23 H -0.222 1.222 24 C -0.152 4.152 25 C -0.056 4.056 26 N -0.169 5.169 27 N -0.196 5.196 28 H 0.303 0.697 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.166 0.834 33 H 0.170 0.830 34 H 0.261 0.739 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.054 0.946 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.204 0.796 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.076 0.924 48 H 0.060 0.940 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.443 -8.705 -31.691 36.749 hybrid contribution 0.788 -1.240 1.037 1.799 sum -15.655 -9.945 -30.654 35.828 Atomic orbital electron populations 1.20644 0.80216 1.06292 1.06255 1.25232 0.98308 0.82093 0.93662 1.70304 1.01743 1.31219 1.26654 1.23812 0.93615 0.90166 0.97516 1.20037 0.94022 1.00123 0.94254 1.20712 0.79535 0.77958 0.91320 1.90746 1.54512 1.53259 1.48043 1.45623 1.32795 1.48586 1.09206 1.21338 0.97505 0.98571 0.82935 1.22234 0.95835 0.99863 0.89368 1.61909 1.31683 1.23123 1.10355 1.22089 1.00680 0.91110 0.92735 1.22109 0.99226 0.99754 0.95339 1.20493 0.94129 0.94994 0.84105 1.42652 1.72875 1.15585 1.06579 1.19651 1.30220 0.95918 0.91190 0.90948 1.25542 1.03643 0.98560 0.99194 1.69828 1.55220 1.20154 1.16867 0.85103 0.77382 0.78540 0.78941 1.19186 1.21857 1.22225 1.21748 1.01269 0.97262 0.94933 1.22003 0.88747 0.98844 0.95959 1.77856 0.98810 1.12679 1.27596 1.47883 1.03355 1.11013 1.57387 0.69710 0.86672 0.87303 0.88525 0.83433 0.83015 0.73943 0.92495 0.92708 0.92379 0.87764 0.90438 0.94556 0.93906 0.93491 0.94607 0.79649 0.94088 0.91598 0.92371 0.94047 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.51 71.23 0.75 0.38 16 2 C 0.28 4.49 8.24 138.22 1.14 5.62 16 3 N -0.57 -12.71 11.19 -179.73 -2.01 -14.72 16 4 C 0.23 5.13 6.63 138.63 0.92 6.05 16 5 C -0.04 -0.60 6.33 29.10 0.18 -0.41 16 6 C 0.52 10.86 7.82 87.66 0.69 11.55 16 7 O -0.59 -19.29 16.03 -3.05 -0.05 -19.33 16 8 N -0.71 -10.38 5.56 -463.05 -2.57 -12.95 16 9 C 0.12 2.41 4.92 86.38 0.43 2.84 16 10 C 0.05 0.90 5.39 86.30 0.46 1.36 16 11 N -0.54 -13.32 4.81 -896.36 -4.31 -17.63 16 12 C 0.06 1.80 4.85 86.33 0.42 2.22 16 13 C -0.12 -4.70 5.68 30.65 0.17 -4.52 16 14 C 0.17 6.98 2.84 45.07 0.13 7.11 16 15 N -0.74 -38.59 5.13 -322.56 -1.65 -40.24 16 16 C -0.24 -13.63 9.93 84.03 0.83 -12.79 16 17 H 0.07 4.02 7.83 -2.91 -0.02 3.99 16 18 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 19 N -0.97 -60.87 13.06 21.65 0.28 -60.59 16 20 Si 0.97 47.43 29.55 68.60 2.03 49.46 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 22 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 23 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 24 C -0.11 -3.72 5.57 30.65 0.17 -3.55 16 25 C 0.07 1.73 5.42 86.32 0.47 2.20 16 26 N -0.34 -7.74 12.80 -51.33 -0.66 -8.40 16 27 N -0.48 -7.47 7.45 -50.71 -0.38 -7.84 16 28 H 0.45 3.51 8.96 -213.10 -1.91 1.60 16 29 H 0.12 0.07 8.14 -2.39 -0.02 0.06 16 30 H 0.11 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.15 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.15 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.42 2.47 8.47 -92.71 -0.79 1.69 16 35 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 36 H 0.05 1.32 6.21 -2.38 -0.01 1.31 16 37 H 0.06 0.78 8.08 -2.38 -0.02 0.76 16 38 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.08 2.20 5.81 -2.39 -0.01 2.18 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 44 H 0.37 20.91 7.80 -92.71 -0.72 20.19 16 45 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 48 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.10 1.87 8.12 -2.39 -0.02 1.85 16 Total: -1.00 -87.79 400.04 -4.52 -92.31 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -2.43 Total: 25.98 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: 7.23 Total: 13.95 kcal Atomic # 7 Polarization: -151.07 SS G_CDS: -11.30 Total: -162.37 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.05 Total: -19.33 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.46 kcal Total: -87.79 -4.52 -92.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325795169.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.861 kcal (2) G-P(sol) polarization free energy of solvation -87.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds