Wall clock time and date at job start Tue Mar 31 2020 19:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00443 * 2 1 4 4 H 1.48498 * 109.47175 * 270.00186 * 3 2 1 5 5 H 1.48501 * 109.46954 * 29.99994 * 3 2 1 6 6 H 1.48501 * 109.47023 * 149.99917 * 3 2 1 7 7 C 1.37882 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99956 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00029 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47206 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47215 * 180.02562 * 10 9 7 12 12 C 1.35309 * 125.87027 * 124.97307 * 11 10 9 13 13 C 1.35353 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.50706 * 126.75076 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.46696 * 94.99878 * 14 13 12 16 16 C 1.34779 * 119.99924 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00000 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00299 * 179.97438 * 16 15 14 19 19 N 1.46900 * 109.47288 * 180.02562 * 18 16 15 20 20 C 1.47911 * 111.00300 * 194.01473 * 19 18 16 21 21 C 1.50794 * 108.49927 * 153.79048 * 20 19 18 22 22 C 1.53700 * 112.10179 * 92.55066 * 21 20 19 23 23 N 1.48063 * 112.47128 * 318.55549 * 22 21 20 24 24 C 1.44573 * 113.85142 * 318.31589 * 23 22 21 25 25 C 1.40019 * 110.99716 * 66.04665 * 19 18 16 26 26 N 1.33775 * 106.49785 * 359.97438 * 13 12 11 27 27 N 1.28637 * 108.88137 * 0.02562 * 26 13 12 28 28 H 0.97000 * 119.99271 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46993 * 59.99691 * 9 7 2 30 30 H 1.09007 * 109.46996 * 299.99902 * 9 7 2 31 31 H 1.08997 * 109.46834 * 59.99655 * 10 9 7 32 32 H 1.09007 * 109.46928 * 299.99779 * 10 9 7 33 33 H 1.08002 * 126.91313 * 0.02562 * 12 11 10 34 34 H 1.08998 * 109.46953 * 215.00023 * 14 13 12 35 35 H 1.08994 * 109.47138 * 335.00219 * 14 13 12 36 36 H 0.96994 * 120.00507 * 0.02562 * 15 14 13 37 37 H 1.08998 * 109.47388 * 300.00253 * 18 16 15 38 38 H 1.09006 * 109.47179 * 60.00627 * 18 16 15 39 39 H 1.08998 * 109.63138 * 273.49958 * 20 19 18 40 40 H 1.09002 * 109.62600 * 34.09114 * 20 19 18 41 41 H 1.09001 * 108.95876 * 331.88119 * 21 20 19 42 42 H 1.09001 * 108.89040 * 213.17991 * 21 20 19 43 43 H 1.08999 * 108.88474 * 197.77984 * 22 21 20 44 44 H 1.09000 * 108.80043 * 79.26888 * 22 21 20 45 45 H 1.00905 * 110.99938 * 84.43226 * 23 22 21 46 46 H 1.08992 * 109.57555 * 334.41435 * 24 23 22 47 47 H 1.09002 * 109.57421 * 214.03806 * 24 23 22 48 48 H 1.08994 * 108.96036 * 308.76846 * 25 19 18 49 49 H 1.08998 * 108.95413 * 67.42629 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 7 5.4864 -2.6368 -0.0002 12 6 6.2785 -3.2665 0.8981 13 6 7.5531 -3.0051 0.5254 14 6 8.8085 -3.4832 1.2085 15 7 9.2821 -4.7077 0.5584 16 6 10.3980 -5.3186 1.0033 17 8 11.0100 -4.8548 1.9422 18 6 10.8849 -6.5784 0.3349 19 7 12.1087 -7.0444 1.0007 20 6 12.7991 -8.0673 0.1854 21 6 14.2677 -8.0398 0.5265 22 6 14.6219 -9.0396 1.6388 23 7 13.6134 -9.0609 2.7228 24 6 13.1341 -7.7504 3.1011 25 6 11.8426 -7.4462 2.3154 26 7 7.4795 -2.2388 -0.5687 27 7 6.2412 -2.0386 -0.8541 28 1 -0.4849 0.8401 0.0004 29 1 3.8745 -0.6809 0.8905 30 1 3.8752 -0.6798 -0.8895 31 1 3.6583 -3.1495 -0.8920 32 1 3.6577 -3.1515 0.8880 33 1 5.9581 -3.8592 1.7422 34 1 9.5768 -2.7134 1.1371 35 1 8.5957 -3.6880 2.2577 36 1 8.7929 -5.0784 -0.1927 37 1 10.1167 -7.3483 0.4072 38 1 11.0972 -6.3742 -0.7146 39 1 12.3893 -9.0522 0.4096 40 1 12.6647 -7.8439 -0.8730 41 1 14.5363 -7.0356 0.8544 42 1 14.8421 -8.2858 -0.3667 43 1 15.5890 -8.7685 2.0620 44 1 14.6943 -10.0368 1.2048 45 1 12.8460 -9.6736 2.4907 46 1 13.8906 -7.0024 2.8641 47 1 12.9235 -7.7333 4.1704 48 1 11.2968 -6.6522 2.8248 49 1 11.2223 -8.3422 2.2931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330751143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:30 Heat of formation + Delta-G solvation = 76.535729 kcal Electronic energy + Delta-G solvation = -28112.418322 eV Core-core repulsion = 24111.983360 eV Total energy + Delta-G solvation = -4000.434961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.11487 -40.61646 -39.09046 -35.90907 -35.35419 -34.77066 -32.91375 -32.77834 -31.54543 -30.53767 -29.38602 -26.94132 -26.20893 -25.92914 -25.04872 -22.32912 -21.88621 -21.60348 -20.72954 -20.56955 -20.27627 -17.80188 -17.39402 -17.01022 -16.45776 -16.18715 -16.17123 -15.89255 -15.65912 -15.37840 -15.29902 -14.61922 -14.36607 -14.16709 -14.02928 -13.86305 -13.64341 -13.23861 -13.16361 -12.93236 -12.83543 -12.66277 -12.19602 -12.02640 -11.74341 -11.61991 -11.52673 -11.33019 -11.27726 -11.03102 -10.83999 -10.81105 -10.39990 -10.11769 -10.06406 -9.66915 -9.55810 -9.30890 -9.17526 -8.76458 -8.72952 -8.66799 -6.27971 -4.31128 1.73832 2.33325 2.39815 2.67873 3.01503 3.19977 3.27733 3.31936 3.58794 3.88762 4.26480 4.27387 4.36835 4.40165 4.54237 4.67553 4.71518 4.74871 4.80879 4.87002 4.93501 4.98930 5.01271 5.04357 5.11617 5.12269 5.34180 5.41776 5.50902 5.54489 5.58650 5.59639 5.63566 5.78916 5.81465 5.91480 6.03465 6.13880 6.16810 6.49476 6.65047 6.67527 6.92112 6.94259 6.96610 7.00433 7.26220 7.45088 7.99259 8.19478 8.68734 8.70510 9.31821 10.83983 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.038287 B = 0.001589 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.147382 B =17621.214026 C =17695.124525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.879 3.121 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.078 0.922 9 C -0.020 4.020 10 C 0.120 3.880 11 N -0.272 5.272 12 C -0.032 4.032 13 C -0.062 4.062 14 C 0.217 3.783 15 N -0.725 5.725 16 C 0.513 3.487 17 O -0.522 6.522 18 C 0.041 3.959 19 N -0.532 5.532 20 C 0.063 3.937 21 C -0.154 4.154 22 C 0.061 3.939 23 N -0.700 5.700 24 C 0.071 3.929 25 C 0.028 3.972 26 N -0.269 5.269 27 N -0.073 5.073 28 H 0.268 0.732 29 H 0.024 0.976 30 H 0.033 0.967 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.188 0.812 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.402 0.598 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.038 0.962 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.338 0.662 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.099 0.901 49 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.674 -19.777 2.442 31.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.126 4.126 3 Si 0.706 3.294 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.096 0.904 9 C -0.059 4.059 10 C 0.001 3.999 11 N -0.064 5.064 12 C -0.186 4.186 13 C -0.201 4.201 14 C 0.092 3.908 15 N -0.378 5.378 16 C 0.299 3.701 17 O -0.398 6.398 18 C -0.090 4.090 19 N -0.257 5.257 20 C -0.064 4.064 21 C -0.194 4.194 22 C -0.069 4.069 23 N -0.330 5.330 24 C -0.059 4.059 25 C -0.103 4.103 26 N -0.136 5.136 27 N -0.053 5.053 28 H 0.077 0.923 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.205 0.795 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.236 0.764 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.156 0.844 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.117 0.883 49 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 25.722 -18.051 2.396 31.516 hybrid contribution -1.446 -0.326 -0.289 1.510 sum 24.276 -18.377 2.106 30.521 Atomic orbital electron populations 1.69877 1.06266 1.27437 1.49370 1.24910 0.94735 0.99193 0.93784 0.86791 0.80241 0.83407 0.79011 1.19813 1.21011 1.19100 1.20767 0.87920 0.95091 1.53411 0.90438 1.19874 0.98073 0.89547 0.98368 1.22589 0.69008 1.03690 1.04637 1.48030 1.10807 1.30427 1.17172 1.23474 0.90727 1.04478 0.99918 1.21745 0.94519 1.05073 0.98783 1.19254 0.90686 0.86095 0.94748 1.46054 1.27651 1.27523 1.36549 1.20478 0.79956 0.85626 0.84056 1.90690 1.55591 1.65491 1.28006 1.21955 0.92445 0.95037 0.99559 1.58809 1.24119 1.40261 1.02477 1.21896 0.94596 0.92542 0.97325 1.22022 0.95542 1.02124 0.99668 1.22371 0.95966 0.98623 0.89899 1.59610 1.18981 1.12510 1.41853 1.21847 0.95270 0.90052 0.98766 1.21935 0.98796 0.99902 0.89657 1.75084 1.10509 1.14639 1.13356 1.78360 0.95640 1.16384 1.14900 0.92254 0.95764 0.94899 0.88394 0.87954 0.79458 0.89706 0.89769 0.76428 0.91845 0.87675 0.94359 0.90420 0.90193 0.91108 0.91044 0.91621 0.84361 0.90187 0.90289 0.88290 0.96726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.93 13.96 55.43 0.77 -25.16 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.88 21.02 27.47 -169.99 -4.67 16.35 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 7 C -0.53 -13.86 9.66 -34.44 -0.33 -14.19 16 8 H 0.08 2.10 7.99 -52.49 -0.42 1.68 16 9 C -0.02 -0.45 4.17 -27.88 -0.12 -0.56 16 10 C 0.12 2.00 6.39 -4.04 -0.03 1.98 16 11 N -0.27 -4.40 3.44 -61.26 -0.21 -4.61 16 12 C -0.03 -0.41 11.50 -17.05 -0.20 -0.61 16 13 C -0.06 -0.82 6.62 -82.77 -0.55 -1.37 16 14 C 0.22 2.35 6.23 -5.19 -0.03 2.32 16 15 N -0.72 -6.60 5.55 -61.47 -0.34 -6.94 16 16 C 0.51 5.06 7.45 -10.99 -0.08 4.98 16 17 O -0.52 -7.01 14.34 5.55 0.08 -6.93 16 18 C 0.04 0.29 5.45 -4.98 -0.03 0.26 16 19 N -0.53 -4.23 3.84 -241.21 -0.93 -5.15 16 20 C 0.06 0.38 5.34 -4.37 -0.02 0.35 16 21 C -0.15 -0.90 5.36 -27.47 -0.15 -1.05 16 22 C 0.06 0.36 6.49 -2.82 -0.02 0.34 16 23 N -0.70 -4.89 6.53 -113.50 -0.74 -5.63 16 24 C 0.07 0.56 6.30 -4.44 -0.03 0.53 16 25 C 0.03 0.23 4.61 -6.75 -0.03 0.20 16 26 N -0.27 -4.57 12.41 33.29 0.41 -4.15 16 27 N -0.07 -1.34 12.92 60.35 0.78 -0.56 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 30 H 0.03 0.76 7.55 -51.93 -0.39 0.36 16 31 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.10 1.47 8.07 -51.93 -0.42 1.05 16 33 H 0.19 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.40 3.06 8.46 -40.82 -0.35 2.71 16 37 H 0.06 0.35 8.10 -51.93 -0.42 -0.07 16 38 H 0.11 0.59 7.70 -51.93 -0.40 0.19 16 39 H 0.04 0.21 7.13 -51.93 -0.37 -0.16 16 40 H 0.08 0.39 7.59 -51.93 -0.39 0.00 16 41 H 0.08 0.62 7.23 -51.93 -0.38 0.25 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 43 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.34 2.11 7.51 -39.29 -0.29 1.81 16 46 H 0.08 0.74 6.93 -51.93 -0.36 0.38 16 47 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 1.03 5.53 -51.93 -0.29 0.75 16 49 H 0.01 0.11 7.57 -51.93 -0.39 -0.28 16 LS Contribution 390.17 15.07 5.88 5.88 Total: -1.00 -32.35 390.17 -8.46 -40.82 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -7.79 Total: 0.89 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.71 Total: -4.80 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.25 Total: -52.21 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: 0.08 Total: -6.93 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.67 Total: 16.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.35 -8.46 -40.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330751143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.352 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds