Wall clock time and date at job start Tue Mar 31 2020 19:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00443 * 2 1 4 4 H 1.48498 * 109.47175 * 270.00186 * 3 2 1 5 5 H 1.48501 * 109.46954 * 29.99994 * 3 2 1 6 6 H 1.48501 * 109.47023 * 149.99917 * 3 2 1 7 7 C 1.37882 * 119.99729 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99956 * 0.02562 * 7 2 1 9 9 C 1.50701 * 120.00029 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47206 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47215 * 180.02562 * 10 9 7 12 12 C 1.35309 * 125.87027 * 124.97307 * 11 10 9 13 13 C 1.35353 * 106.17498 * 179.97438 * 12 11 10 14 14 C 1.50706 * 126.75076 * 179.97438 * 13 12 11 15 15 N 1.46499 * 109.46696 * 94.99878 * 14 13 12 16 16 C 1.34779 * 119.99924 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00000 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00299 * 179.97438 * 16 15 14 19 19 N 1.46900 * 109.47288 * 180.02562 * 18 16 15 20 20 C 1.47911 * 111.00300 * 194.01473 * 19 18 16 21 21 C 1.50794 * 108.49927 * 153.79048 * 20 19 18 22 22 C 1.53700 * 112.10179 * 92.55066 * 21 20 19 23 23 N 1.48063 * 112.47128 * 318.55549 * 22 21 20 24 24 C 1.44573 * 113.85142 * 318.31589 * 23 22 21 25 25 C 1.40019 * 110.99716 * 66.04665 * 19 18 16 26 26 N 1.33775 * 106.49785 * 359.97438 * 13 12 11 27 27 N 1.28637 * 108.88137 * 0.02562 * 26 13 12 28 28 H 0.97000 * 119.99271 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.46993 * 59.99691 * 9 7 2 30 30 H 1.09007 * 109.46996 * 299.99902 * 9 7 2 31 31 H 1.08997 * 109.46834 * 59.99655 * 10 9 7 32 32 H 1.09007 * 109.46928 * 299.99779 * 10 9 7 33 33 H 1.08002 * 126.91313 * 0.02562 * 12 11 10 34 34 H 1.08998 * 109.46953 * 215.00023 * 14 13 12 35 35 H 1.08994 * 109.47138 * 335.00219 * 14 13 12 36 36 H 0.96994 * 120.00507 * 0.02562 * 15 14 13 37 37 H 1.08998 * 109.47388 * 300.00253 * 18 16 15 38 38 H 1.09006 * 109.47179 * 60.00627 * 18 16 15 39 39 H 1.08998 * 109.63138 * 273.49958 * 20 19 18 40 40 H 1.09002 * 109.62600 * 34.09114 * 20 19 18 41 41 H 1.09001 * 108.95876 * 331.88119 * 21 20 19 42 42 H 1.09001 * 108.89040 * 213.17991 * 21 20 19 43 43 H 1.08999 * 108.88474 * 197.77984 * 22 21 20 44 44 H 1.09000 * 108.80043 * 79.26888 * 22 21 20 45 45 H 1.00905 * 110.99938 * 84.43226 * 23 22 21 46 46 H 1.08992 * 109.57555 * 334.41435 * 24 23 22 47 47 H 1.09002 * 109.57421 * 214.03806 * 24 23 22 48 48 H 1.08994 * 108.96036 * 308.76846 * 25 19 18 49 49 H 1.08998 * 108.95413 * 67.42629 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0014 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 7 5.4864 -2.6368 -0.0002 12 6 6.2785 -3.2665 0.8981 13 6 7.5531 -3.0051 0.5254 14 6 8.8085 -3.4832 1.2085 15 7 9.2821 -4.7077 0.5584 16 6 10.3980 -5.3186 1.0033 17 8 11.0100 -4.8548 1.9422 18 6 10.8849 -6.5784 0.3349 19 7 12.1087 -7.0444 1.0007 20 6 12.7991 -8.0673 0.1854 21 6 14.2677 -8.0398 0.5265 22 6 14.6219 -9.0396 1.6388 23 7 13.6134 -9.0609 2.7228 24 6 13.1341 -7.7504 3.1011 25 6 11.8426 -7.4462 2.3154 26 7 7.4795 -2.2388 -0.5687 27 7 6.2412 -2.0386 -0.8541 28 1 -0.4849 0.8401 0.0004 29 1 3.8745 -0.6809 0.8905 30 1 3.8752 -0.6798 -0.8895 31 1 3.6583 -3.1495 -0.8920 32 1 3.6577 -3.1515 0.8880 33 1 5.9581 -3.8592 1.7422 34 1 9.5768 -2.7134 1.1371 35 1 8.5957 -3.6880 2.2577 36 1 8.7929 -5.0784 -0.1927 37 1 10.1167 -7.3483 0.4072 38 1 11.0972 -6.3742 -0.7146 39 1 12.3893 -9.0522 0.4096 40 1 12.6647 -7.8439 -0.8730 41 1 14.5363 -7.0356 0.8544 42 1 14.8421 -8.2858 -0.3667 43 1 15.5890 -8.7685 2.0620 44 1 14.6943 -10.0368 1.2048 45 1 12.8460 -9.6736 2.4907 46 1 13.8906 -7.0024 2.8641 47 1 12.9235 -7.7333 4.1704 48 1 11.2968 -6.6522 2.8248 49 1 11.2223 -8.3422 2.2931 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330751143.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:29 Heat of formation + Delta-G solvation = 50.422500 kcal Electronic energy + Delta-G solvation = -28113.550676 eV Core-core repulsion = 24111.983360 eV Total energy + Delta-G solvation = -4001.567316 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.29098 -41.28017 -39.76538 -37.04397 -36.16939 -35.75017 -34.72674 -33.29780 -32.55654 -32.18475 -30.07379 -27.86557 -27.45887 -26.72000 -25.71909 -23.92370 -22.88248 -22.39792 -21.65983 -21.40706 -21.06064 -19.34246 -18.38636 -17.84642 -17.46968 -17.36128 -16.97473 -16.49655 -16.47424 -16.28388 -16.05194 -15.97973 -15.59617 -15.39013 -14.83737 -14.76379 -14.61571 -14.32952 -14.15711 -13.87092 -13.66871 -13.65781 -13.24642 -13.15789 -12.74337 -12.67500 -12.54411 -12.31762 -12.24657 -12.17734 -11.94281 -11.82604 -11.77586 -11.56941 -11.53645 -11.07157 -10.87777 -10.85146 -10.26373 -10.11072 -9.27801 -9.20967 -8.38145 -6.43345 0.64242 1.25862 1.29820 1.33660 1.41684 1.48623 1.65743 2.25271 2.27336 2.98040 2.98403 3.25410 3.37270 3.69141 3.74733 3.91479 3.95481 4.04078 4.08156 4.13267 4.16068 4.17535 4.30118 4.36116 4.44112 4.48622 4.51355 4.55275 4.61878 4.65357 4.78032 4.89781 4.94367 5.03278 5.06590 5.06725 5.09538 5.22051 5.26362 5.29412 5.37426 5.41390 5.69057 5.97050 6.11800 6.13235 6.39294 6.51162 6.56369 6.64211 7.22543 7.26298 7.49927 8.76873 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.038287 B = 0.001589 C = 0.001582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.147382 B =17621.214026 C =17695.124525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.023 3.977 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.260 1.260 7 C -0.530 4.530 8 H 0.058 0.942 9 C -0.016 4.016 10 C 0.131 3.869 11 N -0.280 5.280 12 C -0.013 4.013 13 C -0.058 4.058 14 C 0.224 3.776 15 N -0.716 5.716 16 C 0.513 3.487 17 O -0.562 6.562 18 C 0.045 3.955 19 N -0.551 5.551 20 C 0.065 3.935 21 C -0.149 4.149 22 C 0.061 3.939 23 N -0.704 5.704 24 C 0.077 3.923 25 C 0.037 3.963 26 N -0.291 5.291 27 N -0.120 5.120 28 H 0.269 0.731 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.233 0.767 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.411 0.589 37 H 0.086 0.914 38 H 0.124 0.876 39 H 0.047 0.953 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.344 0.656 46 H 0.062 0.938 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.897 -21.601 2.533 33.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.177 4.177 3 Si 0.760 3.240 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.184 1.184 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.055 4.055 10 C 0.012 3.988 11 N -0.072 5.072 12 C -0.166 4.166 13 C -0.198 4.198 14 C 0.098 3.902 15 N -0.369 5.369 16 C 0.300 3.700 17 O -0.440 6.440 18 C -0.085 4.085 19 N -0.276 5.276 20 C -0.062 4.062 21 C -0.188 4.188 22 C -0.068 4.068 23 N -0.334 5.334 24 C -0.054 4.054 25 C -0.094 4.094 26 N -0.157 5.157 27 N -0.100 5.100 28 H 0.078 0.922 29 H 0.038 0.962 30 H 0.037 0.963 31 H 0.121 0.879 32 H 0.151 0.849 33 H 0.249 0.751 34 H 0.087 0.913 35 H 0.118 0.882 36 H 0.247 0.753 37 H 0.104 0.896 38 H 0.142 0.858 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.083 0.917 44 H 0.100 0.900 45 H 0.163 0.837 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.093 0.907 49 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 26.954 -19.888 2.452 33.587 hybrid contribution -1.760 0.154 -0.291 1.791 sum 25.194 -19.734 2.161 32.076 Atomic orbital electron populations 1.69992 1.07779 1.28279 1.51556 1.25693 0.95375 1.02565 0.94038 0.85889 0.79221 0.79890 0.78992 1.19705 1.20553 1.18448 1.21109 0.90185 0.94141 1.51404 0.92342 1.19687 0.95334 0.93101 0.97330 1.22340 0.69633 1.00376 1.06495 1.47913 1.10441 1.31074 1.17804 1.24169 0.89891 1.03020 0.99547 1.22076 0.95721 1.04174 0.97782 1.19180 0.89221 0.86387 0.95389 1.45947 1.27602 1.26774 1.36598 1.21016 0.79406 0.86149 0.83453 1.90683 1.56752 1.66725 1.29858 1.21997 0.92711 0.93944 0.99851 1.58761 1.24860 1.41318 1.02635 1.21947 0.94118 0.92397 0.97690 1.21970 0.95989 1.00703 1.00161 1.22397 0.95273 0.99514 0.89637 1.59589 1.19340 1.11917 1.42602 1.21716 0.94828 0.90187 0.98639 1.21765 0.98491 0.99249 0.89848 1.75036 1.10248 1.15505 1.14904 1.78362 0.96310 1.18600 1.16681 0.92184 0.96225 0.96262 0.87892 0.84948 0.75109 0.91289 0.88229 0.75317 0.89640 0.85835 0.93463 0.89060 0.92547 0.89552 0.91741 0.89995 0.83694 0.91928 0.90670 0.90662 0.95867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.11 13.96 21.45 0.30 -54.81 16 2 C 0.02 1.23 5.47 84.66 0.46 1.70 16 3 Si 0.94 43.33 27.47 68.60 1.88 45.21 16 4 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.67 6.54 99.48 0.65 -11.02 16 7 C -0.53 -27.42 9.66 25.60 0.25 -27.18 16 8 H 0.06 3.18 7.99 -2.91 -0.02 3.16 16 9 C -0.02 -0.69 4.17 29.85 0.12 -0.57 16 10 C 0.13 4.10 6.39 86.38 0.55 4.65 16 11 N -0.28 -8.45 3.44 -347.73 -1.20 -9.64 16 12 C -0.01 -0.29 11.50 83.49 0.96 0.67 16 13 C -0.06 -1.41 6.62 41.60 0.28 -1.13 16 14 C 0.22 4.43 6.23 85.64 0.53 4.96 16 15 N -0.72 -11.56 5.55 -466.79 -2.59 -14.15 16 16 C 0.51 9.33 7.45 87.66 0.65 9.98 16 17 O -0.56 -14.84 14.34 -3.04 -0.04 -14.88 16 18 C 0.05 0.53 5.45 85.56 0.47 0.99 16 19 N -0.55 -7.89 3.84 -917.04 -3.52 -11.41 16 20 C 0.06 0.62 5.34 85.39 0.46 1.07 16 21 C -0.15 -1.52 5.36 30.11 0.16 -1.36 16 22 C 0.06 0.63 6.49 86.31 0.56 1.19 16 23 N -0.70 -9.04 6.53 -513.00 -3.35 -12.39 16 24 C 0.08 1.20 6.30 87.15 0.55 1.75 16 25 C 0.04 0.58 4.61 87.95 0.41 0.99 16 26 N -0.29 -9.55 12.41 -48.59 -0.60 -10.15 16 27 N -0.12 -4.33 12.92 37.02 0.48 -3.85 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 30 H 0.02 0.87 7.55 -2.38 -0.02 0.85 16 31 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.13 3.34 8.07 -2.38 -0.02 3.32 16 33 H 0.23 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.41 5.21 8.46 -92.71 -0.78 4.42 16 37 H 0.09 0.65 8.10 -2.39 -0.02 0.63 16 38 H 0.12 1.00 7.70 -2.38 -0.02 0.98 16 39 H 0.05 0.38 7.13 -2.39 -0.02 0.37 16 40 H 0.09 0.63 7.59 -2.39 -0.02 0.62 16 41 H 0.06 0.86 7.23 -2.39 -0.02 0.85 16 42 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.34 3.67 7.51 -89.69 -0.67 3.00 16 46 H 0.06 1.19 6.93 -2.39 -0.02 1.17 16 47 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.56 5.53 -2.39 -0.01 1.54 16 49 H 0.02 0.31 7.57 -2.39 -0.02 0.30 16 Total: -1.00 -71.80 390.17 -2.77 -74.58 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -0.54 Total: 13.76 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 6.41 Total: -2.27 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -10.48 Total: -116.40 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.04 Total: -14.88 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 1.88 Total: 45.21 kcal Total: -71.80 -2.77 -74.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330751143.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.001 kcal (2) G-P(sol) polarization free energy of solvation -71.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds