Wall clock time and date at job start Tue Mar 31 2020 19:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 119.99832 * 2 1 4 4 C 1.50704 * 120.00066 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.46816 * 94.24630 * 4 2 1 6 6 N 1.40586 * 127.37938 * 276.32493 * 5 4 2 7 7 N 1.28903 * 106.81625 * 180.02562 * 6 5 4 8 8 N 1.28426 * 110.31461 * 359.72849 * 7 6 5 9 9 C 1.31470 * 110.50733 * 0.45632 * 8 7 6 10 10 N 1.38382 * 126.43533 * 179.81224 * 9 8 7 11 11 C 1.46902 * 110.99884 * 36.66887 * 10 9 8 12 12 C 1.50698 * 109.47771 * 62.05870 * 11 10 9 13 13 H 1.08002 * 119.99567 * 4.88845 * 12 11 10 14 14 C 1.37872 * 120.00099 * 184.88651 * 12 11 10 15 15 N 1.31520 * 119.99550 * 174.88204 * 14 12 11 16 16 Si 1.86800 * 120.00233 * 354.87969 * 14 12 11 17 17 H 1.48499 * 109.46841 * 90.00133 * 16 14 12 18 18 H 1.48492 * 109.47375 * 209.99939 * 16 14 12 19 19 H 1.48502 * 109.47028 * 330.00121 * 16 14 12 20 20 C 1.46897 * 111.00341 * 272.70445 * 10 9 8 21 21 C 1.52997 * 109.47076 * 189.99895 * 20 10 9 22 22 N 1.46900 * 109.46889 * 180.02562 * 21 20 10 23 23 C 1.47018 * 110.99989 * 293.63443 * 22 21 20 24 24 C 1.53100 * 109.25568 * 177.60612 * 23 22 21 25 25 O 1.43022 * 109.25333 * 56.85580 * 24 23 22 26 26 C 1.43016 * 113.74100 * 301.32338 * 25 24 23 27 27 C 1.47016 * 110.99817 * 170.00593 * 22 21 20 28 28 H 1.07999 * 119.99810 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.00146 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47378 * 275.23908 * 3 2 1 31 31 H 1.09001 * 109.47522 * 35.24066 * 3 2 1 32 32 H 1.09004 * 109.47232 * 155.24309 * 3 2 1 33 33 H 1.08998 * 109.46944 * 334.24747 * 4 2 1 34 34 H 1.08999 * 109.47073 * 214.24393 * 4 2 1 35 35 H 1.09002 * 109.47103 * 182.06611 * 11 10 9 36 36 H 1.09001 * 109.46825 * 302.05924 * 11 10 9 37 37 H 0.97001 * 119.99469 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.46868 * 70.00458 * 20 10 9 39 39 H 1.08999 * 109.47163 * 310.00464 * 20 10 9 40 40 H 1.08999 * 109.47589 * 300.00308 * 21 20 10 41 41 H 1.09004 * 109.46812 * 60.00529 * 21 20 10 42 42 H 1.08997 * 109.51026 * 297.54354 * 23 22 21 43 43 H 1.08996 * 109.50194 * 57.67911 * 23 22 21 44 44 H 1.08992 * 109.51132 * 296.92304 * 24 23 22 45 45 H 1.08995 * 109.53932 * 176.80462 * 24 23 22 46 46 H 1.09000 * 109.50568 * 298.74223 * 26 25 24 47 47 H 1.08997 * 109.54585 * 178.63198 * 26 25 24 48 48 H 1.09007 * 109.50641 * 302.32571 * 27 22 21 49 49 H 1.08998 * 109.51039 * 62.41182 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.3962 -1.6775 -1.3767 6 7 1.5757 -2.3461 -2.3020 7 7 2.2611 -2.4702 -3.3867 8 7 3.4240 -1.9448 -3.2419 9 6 3.5591 -1.4521 -2.0305 10 7 4.6784 -0.8170 -1.5218 11 6 5.3303 0.0049 -2.5501 12 6 4.3815 1.0824 -3.0082 13 1 3.4233 1.1996 -2.5240 14 6 4.7367 1.9184 -4.0454 15 7 3.8711 2.7917 -4.5119 16 14 6.4474 1.8107 -4.7880 17 1 6.4408 0.8339 -5.9066 18 1 6.8502 3.1455 -5.2989 19 1 7.4110 1.3669 -3.7489 20 6 5.6200 -1.7882 -0.9489 21 6 6.7149 -1.0451 -0.1809 22 7 7.6567 -2.0163 0.3915 23 6 7.0066 -2.8340 1.4259 24 6 8.0042 -3.8695 1.9518 25 8 9.1664 -3.1970 2.4444 26 6 9.8249 -2.3917 1.4630 27 6 8.8458 -1.3414 0.9320 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9354 -0.0004 30 1 2.1638 1.6667 -1.0233 31 1 1.5182 2.0395 0.5930 32 1 3.0533 1.1532 0.4304 33 1 1.4436 -2.0824 0.4474 34 1 2.9809 -1.1947 0.5788 35 1 6.2273 0.4635 -2.1339 36 1 5.6035 -0.6232 -3.3980 37 1 4.1211 3.3802 -5.2414 38 1 6.0714 -2.3729 -1.7505 39 1 5.0872 -2.4535 -0.2695 40 1 7.2476 -0.3797 -0.8603 41 1 6.2634 -0.4604 0.6207 42 1 6.6812 -2.1932 2.2453 43 1 6.1442 -3.3445 0.9974 44 1 8.2888 -4.5437 1.1442 45 1 7.5452 -4.4410 2.7585 46 1 10.1624 -3.0231 0.6411 47 1 10.6826 -1.8940 1.9155 48 1 9.3258 -0.7623 0.1431 49 1 8.5496 -0.6761 1.7430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332486738.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:05 Heat of formation + Delta-G solvation = 120.135844 kcal Electronic energy + Delta-G solvation = -30750.447972 eV Core-core repulsion = 26751.903653 eV Total energy + Delta-G solvation = -3998.544318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.33910 -39.79754 -37.80515 -36.61537 -35.71020 -33.17207 -32.58905 -31.48706 -31.08092 -29.63225 -27.96479 -27.41014 -26.88214 -25.65356 -24.27965 -22.90569 -22.42694 -22.04215 -20.59230 -20.05982 -18.76419 -17.48408 -16.90695 -16.62359 -16.34649 -16.01179 -15.67824 -15.41767 -15.26868 -15.06215 -14.75414 -14.54167 -14.23307 -13.96072 -13.70496 -13.45883 -13.16624 -12.86564 -12.54945 -12.51687 -12.37837 -12.15422 -11.93961 -11.75126 -11.66903 -11.60600 -11.45583 -11.28641 -11.03040 -10.83402 -10.77461 -10.49572 -10.38995 -9.99201 -9.93546 -9.88816 -9.60134 -9.52747 -9.05154 -8.65832 -8.58091 -8.24235 -6.16002 -4.15504 1.51813 1.88012 2.68233 2.95725 3.24429 3.29172 3.32867 3.45883 3.65153 4.15898 4.33478 4.55163 4.63776 4.71101 4.74043 4.76913 4.92432 5.01964 5.04988 5.11232 5.18220 5.23351 5.28884 5.33451 5.39650 5.39734 5.50870 5.58580 5.60730 5.71030 5.75134 5.80471 5.93530 5.95900 5.99518 6.02445 6.09715 6.26353 6.41495 6.57493 6.68366 6.74672 6.76868 6.78243 6.89754 6.90050 7.13460 7.38817 7.65124 8.39429 8.86519 9.15395 9.43208 10.96566 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008441 B = 0.004607 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.207491 B = 6076.508816 C = 7950.087953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.141 4.141 3 C -0.117 4.117 4 C 0.170 3.830 5 N -0.375 5.375 6 N -0.104 5.104 7 N -0.042 5.042 8 N -0.340 5.340 9 C 0.459 3.541 10 N -0.458 5.458 11 C 0.169 3.831 12 C -0.519 4.519 13 H 0.079 0.921 14 C 0.080 3.920 15 N -0.891 5.891 16 Si 0.873 3.127 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.267 1.267 20 C 0.065 3.935 21 C 0.060 3.940 22 N -0.537 5.537 23 C 0.014 3.986 24 C 0.064 3.936 25 O -0.388 6.388 26 C 0.064 3.936 27 C 0.019 3.981 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.046 0.954 36 H 0.016 0.984 37 H 0.266 0.734 38 H 0.058 0.942 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.045 0.955 43 H 0.086 0.914 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.060 0.940 47 H 0.097 0.903 48 H 0.089 0.911 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 -8.960 15.927 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.173 4.173 4 C 0.048 3.952 5 N -0.174 5.174 6 N -0.090 5.090 7 N -0.038 5.038 8 N -0.196 5.196 9 C 0.093 3.907 10 N -0.185 5.185 11 C 0.044 3.956 12 C -0.557 4.557 13 H 0.096 0.904 14 C -0.124 4.124 15 N -0.529 5.529 16 Si 0.700 3.300 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.063 4.063 21 C -0.067 4.067 22 N -0.263 5.263 23 C -0.115 4.115 24 C -0.013 4.013 25 O -0.306 6.306 26 C -0.013 4.013 27 C -0.109 4.109 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.064 0.936 36 H 0.034 0.966 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.104 0.896 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.078 0.922 47 H 0.115 0.885 48 H 0.107 0.893 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.020 -9.487 14.969 18.420 hybrid contribution 0.815 0.872 0.017 1.194 sum 5.835 -8.615 14.987 18.245 Atomic orbital electron populations 1.23805 0.95114 1.02221 0.99189 1.21875 0.95525 0.95428 1.01429 1.20886 0.99569 0.92973 1.03919 1.20822 1.01711 0.95255 0.77412 1.51522 1.09920 1.42537 1.13431 1.82392 1.15062 1.16490 0.95049 1.77845 0.98789 1.12065 1.15093 1.74910 1.12722 1.16647 1.15327 1.22853 0.88878 0.91736 0.87222 1.59036 1.04445 1.18982 1.36034 1.20432 0.95416 0.92096 0.87642 1.20812 1.03587 1.13793 1.17491 0.90350 1.24773 0.96954 0.95079 0.95585 1.69885 1.34384 1.22143 1.26441 0.86888 0.85090 0.77740 0.80312 1.19829 1.21085 1.19133 1.22088 0.92504 0.93156 0.98546 1.22108 0.92791 0.93270 0.98581 1.62114 1.07482 1.24324 1.32365 1.22855 0.97936 0.96771 0.93899 1.22661 0.85669 0.93702 0.99266 1.87971 1.41667 1.63719 1.37271 1.22671 0.94371 0.92270 0.91972 1.22772 0.92194 0.96514 0.99442 0.88278 0.87822 0.89721 0.92276 0.91362 0.88374 0.87502 0.93611 0.96582 0.92452 0.92326 0.91505 0.89226 0.93224 0.93700 0.89577 0.92241 0.88569 0.92201 0.88466 0.89295 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 13.91 29.02 0.40 -1.73 16 2 C -0.14 -2.01 5.63 -101.07 -0.57 -2.58 16 3 C -0.12 -1.80 10.02 36.00 0.36 -1.44 16 4 C 0.17 2.28 6.66 -5.19 -0.03 2.25 16 5 N -0.38 -6.75 3.67 -63.04 -0.23 -6.98 16 6 N -0.10 -2.08 13.93 60.35 0.84 -1.24 16 7 N -0.04 -0.94 13.38 60.35 0.81 -0.13 16 8 N -0.34 -7.83 11.49 30.09 0.35 -7.48 16 9 C 0.46 9.25 5.79 -320.43 -1.86 7.39 16 10 N -0.46 -8.44 4.50 -176.23 -0.79 -9.23 16 11 C 0.17 3.71 3.43 -4.98 -0.02 3.70 16 12 C -0.52 -13.78 9.14 -34.44 -0.31 -14.10 16 13 H 0.08 2.28 6.38 -52.49 -0.33 1.95 16 14 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 15 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 16 Si 0.87 20.73 27.42 -169.99 -4.66 16.06 16 17 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.27 -5.84 6.64 56.52 0.38 -5.47 16 20 C 0.06 0.95 4.83 -3.83 -0.02 0.93 16 21 C 0.06 0.77 4.89 -3.83 -0.02 0.75 16 22 N -0.54 -6.04 4.73 -234.30 -1.11 -7.15 16 23 C 0.01 0.13 5.44 -3.71 -0.02 0.11 16 24 C 0.06 0.58 7.01 37.21 0.26 0.84 16 25 O -0.39 -4.13 10.83 -35.23 -0.38 -4.51 16 26 C 0.06 0.58 7.01 37.21 0.26 0.84 16 27 C 0.02 0.19 5.64 -3.71 -0.02 0.17 16 28 H 0.10 1.16 8.00 -52.49 -0.42 0.74 16 29 H 0.10 1.25 8.05 -52.48 -0.42 0.83 16 30 H 0.08 1.69 6.69 -51.93 -0.35 1.34 16 31 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 32 H 0.07 1.01 8.03 -51.93 -0.42 0.60 16 33 H 0.10 1.06 8.00 -51.93 -0.42 0.64 16 34 H 0.11 1.25 8.00 -51.93 -0.42 0.83 16 35 H 0.05 0.96 5.43 -51.93 -0.28 0.68 16 36 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 37 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 39 H 0.07 0.86 6.43 -51.93 -0.33 0.52 16 40 H 0.09 1.26 6.33 -51.93 -0.33 0.93 16 41 H 0.05 0.63 8.12 -51.93 -0.42 0.20 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.79 6.38 -51.93 -0.33 0.46 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 48 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 49 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -32.32 394.05 -7.95 -40.27 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.80 Total: 0.96 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.68 Total: -0.76 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.64 Total: -57.97 kcal Atomic # 8 Polarization: -4.13 SS G_CDS: -0.38 Total: -4.51 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.66 Total: 16.06 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.32 -7.95 -40.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332486738.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.402 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds