Wall clock time and date at job start Tue Mar 31 2020 19:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50697 * 119.99832 * 2 1 4 4 C 1.50704 * 120.00066 * 179.97438 * 2 1 3 5 5 N 1.46505 * 109.46816 * 94.24630 * 4 2 1 6 6 N 1.40586 * 127.37938 * 276.32493 * 5 4 2 7 7 N 1.28903 * 106.81625 * 180.02562 * 6 5 4 8 8 N 1.28426 * 110.31461 * 359.72849 * 7 6 5 9 9 C 1.31470 * 110.50733 * 0.45632 * 8 7 6 10 10 N 1.38382 * 126.43533 * 179.81224 * 9 8 7 11 11 C 1.46902 * 110.99884 * 36.66887 * 10 9 8 12 12 C 1.50698 * 109.47771 * 62.05870 * 11 10 9 13 13 H 1.08002 * 119.99567 * 4.88845 * 12 11 10 14 14 C 1.37872 * 120.00099 * 184.88651 * 12 11 10 15 15 N 1.31520 * 119.99550 * 174.88204 * 14 12 11 16 16 Si 1.86800 * 120.00233 * 354.87969 * 14 12 11 17 17 H 1.48499 * 109.46841 * 90.00133 * 16 14 12 18 18 H 1.48492 * 109.47375 * 209.99939 * 16 14 12 19 19 H 1.48502 * 109.47028 * 330.00121 * 16 14 12 20 20 C 1.46897 * 111.00341 * 272.70445 * 10 9 8 21 21 C 1.52997 * 109.47076 * 189.99895 * 20 10 9 22 22 N 1.46900 * 109.46889 * 180.02562 * 21 20 10 23 23 C 1.47018 * 110.99989 * 293.63443 * 22 21 20 24 24 C 1.53100 * 109.25568 * 177.60612 * 23 22 21 25 25 O 1.43022 * 109.25333 * 56.85580 * 24 23 22 26 26 C 1.43016 * 113.74100 * 301.32338 * 25 24 23 27 27 C 1.47016 * 110.99817 * 170.00593 * 22 21 20 28 28 H 1.07999 * 119.99810 * 179.97438 * 1 2 3 29 29 H 1.08007 * 120.00146 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47378 * 275.23908 * 3 2 1 31 31 H 1.09001 * 109.47522 * 35.24066 * 3 2 1 32 32 H 1.09004 * 109.47232 * 155.24309 * 3 2 1 33 33 H 1.08998 * 109.46944 * 334.24747 * 4 2 1 34 34 H 1.08999 * 109.47073 * 214.24393 * 4 2 1 35 35 H 1.09002 * 109.47103 * 182.06611 * 11 10 9 36 36 H 1.09001 * 109.46825 * 302.05924 * 11 10 9 37 37 H 0.97001 * 119.99469 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.46868 * 70.00458 * 20 10 9 39 39 H 1.08999 * 109.47163 * 310.00464 * 20 10 9 40 40 H 1.08999 * 109.47589 * 300.00308 * 21 20 10 41 41 H 1.09004 * 109.46812 * 60.00529 * 21 20 10 42 42 H 1.08997 * 109.51026 * 297.54354 * 23 22 21 43 43 H 1.08996 * 109.50194 * 57.67911 * 23 22 21 44 44 H 1.08992 * 109.51132 * 296.92304 * 24 23 22 45 45 H 1.08995 * 109.53932 * 176.80462 * 24 23 22 46 46 H 1.09000 * 109.50568 * 298.74223 * 26 25 24 47 47 H 1.08997 * 109.54585 * 178.63198 * 26 25 24 48 48 H 1.09007 * 109.50641 * 302.32571 * 27 22 21 49 49 H 1.08998 * 109.51039 * 62.41182 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 7 2.3962 -1.6775 -1.3767 6 7 1.5757 -2.3461 -2.3020 7 7 2.2611 -2.4702 -3.3867 8 7 3.4240 -1.9448 -3.2419 9 6 3.5591 -1.4521 -2.0305 10 7 4.6784 -0.8170 -1.5218 11 6 5.3303 0.0049 -2.5501 12 6 4.3815 1.0824 -3.0082 13 1 3.4233 1.1996 -2.5240 14 6 4.7367 1.9184 -4.0454 15 7 3.8711 2.7917 -4.5119 16 14 6.4474 1.8107 -4.7880 17 1 6.4408 0.8339 -5.9066 18 1 6.8502 3.1455 -5.2989 19 1 7.4110 1.3669 -3.7489 20 6 5.6200 -1.7882 -0.9489 21 6 6.7149 -1.0451 -0.1809 22 7 7.6567 -2.0163 0.3915 23 6 7.0066 -2.8340 1.4259 24 6 8.0042 -3.8695 1.9518 25 8 9.1664 -3.1970 2.4444 26 6 9.8249 -2.3917 1.4630 27 6 8.8458 -1.3414 0.9320 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9354 -0.0004 30 1 2.1638 1.6667 -1.0233 31 1 1.5182 2.0395 0.5930 32 1 3.0533 1.1532 0.4304 33 1 1.4436 -2.0824 0.4474 34 1 2.9809 -1.1947 0.5788 35 1 6.2273 0.4635 -2.1339 36 1 5.6035 -0.6232 -3.3980 37 1 4.1211 3.3802 -5.2414 38 1 6.0714 -2.3729 -1.7505 39 1 5.0872 -2.4535 -0.2695 40 1 7.2476 -0.3797 -0.8603 41 1 6.2634 -0.4604 0.6207 42 1 6.6812 -2.1932 2.2453 43 1 6.1442 -3.3445 0.9974 44 1 8.2888 -4.5437 1.1442 45 1 7.5452 -4.4410 2.7585 46 1 10.1624 -3.0231 0.6411 47 1 10.6826 -1.8940 1.9155 48 1 9.3258 -0.7623 0.1431 49 1 8.5496 -0.6761 1.7430 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332486738.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:04 Heat of formation + Delta-G solvation = 96.538602 kcal Electronic energy + Delta-G solvation = -30751.471225 eV Core-core repulsion = 26751.903653 eV Total energy + Delta-G solvation = -3999.567571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.91676 -40.61470 -39.17208 -37.81457 -36.68357 -34.82404 -34.38000 -32.60438 -32.13972 -31.06194 -29.50984 -28.65268 -28.05311 -26.74502 -25.09032 -24.64221 -23.97393 -23.21642 -21.67523 -21.26947 -19.97831 -19.21685 -18.37987 -17.79044 -17.45528 -17.17846 -17.02406 -16.44814 -16.22896 -15.98206 -15.94787 -15.85674 -15.52881 -15.28424 -14.96997 -14.66314 -14.51619 -14.39845 -14.12523 -13.94088 -13.50606 -13.32599 -13.18201 -12.99522 -12.83782 -12.70298 -12.67363 -12.46931 -12.43883 -12.29018 -12.02758 -11.85225 -11.75231 -11.55717 -11.45022 -11.28754 -11.20255 -10.76805 -10.64549 -10.23385 -9.82416 -9.41653 -8.28896 -6.31994 0.00146 0.57925 1.33030 1.34652 1.38575 1.43375 1.45246 2.34112 2.38635 2.91038 3.03578 3.07050 3.32261 3.60977 3.65749 3.80149 3.90918 4.00510 4.06115 4.10215 4.23652 4.28063 4.31601 4.35242 4.38016 4.40743 4.52924 4.61628 4.63449 4.71498 4.75432 4.75699 4.79169 4.83871 4.85488 4.89635 4.93154 4.94506 5.05797 5.13513 5.17347 5.39897 5.54635 5.55518 5.75824 5.90831 5.94520 6.00644 6.20167 6.32733 6.72106 7.29972 7.54108 8.87121 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008441 B = 0.004607 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.207491 B = 6076.508816 C = 7950.087953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.165 4.165 3 C -0.107 4.107 4 C 0.161 3.839 5 N -0.362 5.362 6 N -0.100 5.100 7 N -0.067 5.067 8 N -0.379 5.379 9 C 0.452 3.548 10 N -0.449 5.449 11 C 0.179 3.821 12 C -0.512 4.512 13 H 0.042 0.958 14 C 0.019 3.981 15 N -0.943 5.943 16 Si 0.933 3.067 17 H -0.280 1.280 18 H -0.283 1.283 19 H -0.232 1.232 20 C 0.068 3.932 21 C 0.070 3.930 22 N -0.545 5.545 23 C 0.014 3.986 24 C 0.063 3.937 25 O -0.404 6.404 26 C 0.065 3.935 27 C 0.018 3.982 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.029 0.971 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.067 0.933 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.048 0.952 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.092 0.908 44 H 0.058 0.942 45 H 0.115 0.885 46 H 0.060 0.940 47 H 0.116 0.884 48 H 0.093 0.907 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.887 -10.243 18.327 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.166 4.166 3 C -0.163 4.163 4 C 0.041 3.959 5 N -0.161 5.161 6 N -0.087 5.087 7 N -0.063 5.063 8 N -0.236 5.236 9 C 0.085 3.915 10 N -0.176 5.176 11 C 0.054 3.946 12 C -0.550 4.550 13 H 0.060 0.940 14 C -0.180 4.180 15 N -0.584 5.584 16 Si 0.757 3.243 17 H -0.206 1.206 18 H -0.209 1.209 19 H -0.155 1.155 20 C -0.059 4.059 21 C -0.058 4.058 22 N -0.271 5.271 23 C -0.114 4.114 24 C -0.013 4.013 25 O -0.323 6.323 26 C -0.012 4.012 27 C -0.110 4.110 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.151 0.849 34 H 0.146 0.854 35 H 0.085 0.915 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.108 0.892 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.133 0.867 46 H 0.078 0.922 47 H 0.133 0.867 48 H 0.111 0.889 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.258 -10.792 17.426 21.432 hybrid contribution 0.280 1.260 -0.599 1.423 sum 6.538 -9.532 16.828 20.415 Atomic orbital electron populations 1.24089 0.94780 1.03469 0.96210 1.21848 0.96031 0.95024 1.03705 1.20728 1.00533 0.94407 1.00672 1.21338 1.03505 0.95882 0.75178 1.51775 1.08675 1.41226 1.14437 1.82251 1.15215 1.16266 0.94963 1.77800 0.99036 1.13335 1.16165 1.74785 1.13504 1.17970 1.17322 1.22959 0.89855 0.91641 0.86999 1.59032 1.04617 1.19734 1.34191 1.20166 0.95042 0.91125 0.88312 1.21043 1.02901 1.14435 1.16615 0.94026 1.25659 1.01045 0.94870 0.96389 1.70047 1.36835 1.23828 1.27670 0.85920 0.80920 0.77548 0.79935 1.20601 1.20866 1.15471 1.22203 0.92441 0.92698 0.98546 1.21925 0.92343 0.93223 0.98297 1.62105 1.07543 1.24050 1.33357 1.22910 0.98271 0.96733 0.93515 1.22772 0.85178 0.93443 0.99953 1.87954 1.42217 1.64000 1.38090 1.22767 0.94536 0.91981 0.91935 1.22830 0.91835 0.96807 0.99499 0.86456 0.87203 0.95208 0.90430 0.91100 0.84882 0.85435 0.91497 0.97889 0.92632 0.93337 0.89187 0.90424 0.92755 0.93578 0.89015 0.92339 0.86683 0.92206 0.86651 0.88903 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 13.91 67.78 0.94 -2.54 16 2 C -0.16 -4.44 5.63 -16.48 -0.09 -4.53 16 3 C -0.11 -3.30 10.02 71.23 0.71 -2.58 16 4 C 0.16 3.92 6.66 85.63 0.57 4.49 16 5 N -0.36 -12.63 3.67 -353.36 -1.30 -13.93 16 6 N -0.10 -3.96 13.93 37.02 0.52 -3.44 16 7 N -0.07 -3.05 13.38 37.02 0.50 -2.56 16 8 N -0.38 -17.66 11.49 -58.70 -0.67 -18.34 16 9 C 0.45 18.04 5.79 260.65 1.51 19.55 16 10 N -0.45 -16.15 4.50 -711.46 -3.20 -19.35 16 11 C 0.18 7.81 3.43 85.56 0.29 8.10 16 12 C -0.51 -27.83 9.14 25.60 0.23 -27.59 16 13 H 0.04 2.54 6.38 -2.91 -0.02 2.52 16 14 C 0.02 1.05 5.47 84.65 0.46 1.52 16 15 N -0.94 -58.38 13.96 21.45 0.30 -58.08 16 16 Si 0.93 42.80 27.42 68.60 1.88 44.68 16 17 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 19 H -0.23 -9.24 6.64 99.48 0.66 -8.58 16 20 C 0.07 1.85 4.83 86.30 0.42 2.27 16 21 C 0.07 1.64 4.89 86.30 0.42 2.06 16 22 N -0.54 -10.93 4.73 -895.20 -4.23 -15.17 16 23 C 0.01 0.23 5.44 86.31 0.47 0.70 16 24 C 0.06 0.97 7.01 72.02 0.50 1.48 16 25 O -0.40 -7.61 10.83 -148.98 -1.61 -9.22 16 26 C 0.06 1.01 7.01 72.02 0.50 1.52 16 27 C 0.02 0.32 5.64 86.31 0.49 0.81 16 28 H 0.12 2.36 8.00 -2.91 -0.02 2.34 16 29 H 0.11 2.45 8.05 -2.91 -0.02 2.43 16 30 H 0.03 1.25 6.69 -2.39 -0.02 1.23 16 31 H 0.08 2.02 8.10 -2.39 -0.02 2.00 16 32 H 0.07 2.08 8.03 -2.39 -0.02 2.06 16 33 H 0.13 2.35 8.00 -2.39 -0.02 2.33 16 34 H 0.13 2.59 8.00 -2.39 -0.02 2.57 16 35 H 0.07 2.67 5.43 -2.39 -0.01 2.66 16 36 H 0.00 0.15 7.13 -2.39 -0.02 0.13 16 37 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 38 H 0.05 1.46 8.12 -2.38 -0.02 1.44 16 39 H 0.09 2.05 6.43 -2.39 -0.02 2.04 16 40 H 0.08 2.01 6.33 -2.39 -0.02 2.00 16 41 H 0.05 1.23 8.12 -2.38 -0.02 1.21 16 42 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.09 1.41 6.38 -2.39 -0.02 1.39 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.09 1.54 8.09 -2.38 -0.02 1.52 16 49 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -73.28 394.05 0.51 -72.76 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.90 Total: 17.40 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 7.44 Total: 5.25 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -8.09 Total: -130.86 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: -1.61 Total: -9.22 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 1.88 Total: 44.68 kcal Total: -73.28 0.51 -72.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332486738.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.303 kcal (2) G-P(sol) polarization free energy of solvation -73.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds