Wall clock time and date at job start Tue Mar 31 2020 19:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00270 * 2 1 4 4 C 1.52997 * 109.47187 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46897 * 63.64058 * 4 3 2 6 6 C 1.36926 * 120.00225 * 266.79809 * 5 4 3 7 7 H 1.08007 * 120.00222 * 143.23335 * 6 5 4 8 8 C 1.38811 * 120.00314 * 323.23632 * 6 5 4 9 9 N 1.31617 * 120.00294 * 160.07153 * 8 6 5 10 10 Si 1.86801 * 119.99709 * 340.06831 * 8 6 5 11 11 H 1.48497 * 109.47251 * 95.25482 * 10 8 6 12 12 H 1.48499 * 109.46923 * 215.25612 * 10 8 6 13 13 H 1.48506 * 109.46907 * 335.25141 * 10 8 6 14 14 C 1.46508 * 119.99757 * 86.80140 * 5 4 3 15 15 C 1.52996 * 109.47296 * 89.99952 * 14 5 4 16 16 N 1.46499 * 109.47180 * 179.97438 * 15 14 5 17 17 C 1.34771 * 120.00194 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99886 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00239 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.74575 * 300.62514 * 19 17 16 21 21 C 1.53390 * 109.71958 * 180.02562 * 19 17 16 22 22 C 1.53025 * 109.71978 * 189.77994 * 21 19 17 23 23 C 1.53377 * 109.74764 * 71.72945 * 22 21 19 24 24 C 1.50960 * 108.20113 * 309.34735 * 23 22 21 25 25 N 1.30123 * 128.28436 * 196.65094 * 24 23 22 26 26 N 1.40309 * 108.12265 * 179.86842 * 25 24 23 27 27 H 0.97001 * 126.01004 * 180.02562 * 26 25 24 28 28 C 1.35198 * 107.99604 * 0.03505 * 26 25 24 29 29 C 1.34577 * 107.61381 * 0.04209 * 28 26 25 30 30 H 1.09004 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47157 * 300.00246 * 1 2 3 32 32 H 1.09000 * 109.46788 * 60.00193 * 1 2 3 33 33 H 1.09001 * 109.47108 * 59.99659 * 3 2 1 34 34 H 1.08999 * 109.47075 * 299.99986 * 3 2 1 35 35 H 1.08998 * 109.47541 * 303.64514 * 4 3 2 36 36 H 1.08993 * 109.47016 * 183.63613 * 4 3 2 37 37 H 0.97007 * 119.99998 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.47136 * 329.99490 * 14 5 4 39 39 H 1.09001 * 109.47000 * 209.99955 * 14 5 4 40 40 H 1.08999 * 109.47080 * 59.99944 * 15 14 5 41 41 H 1.09001 * 109.47099 * 299.99942 * 15 14 5 42 42 H 0.97001 * 119.99602 * 359.97438 * 16 15 14 43 43 H 1.08998 * 109.43456 * 69.70226 * 21 19 17 44 44 H 1.09003 * 109.42874 * 309.85458 * 21 19 17 45 45 H 1.08999 * 109.42568 * 191.80695 * 22 21 19 46 46 H 1.08997 * 109.42907 * 311.70142 * 22 21 19 47 47 H 1.08993 * 109.71854 * 69.02484 * 23 22 21 48 48 H 1.08996 * 109.71802 * 189.67401 * 23 22 21 49 49 H 1.07999 * 126.19743 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9743 0.5344 -1.2367 6 6 4.1584 -0.8220 -1.2694 7 1 3.8980 -1.3812 -2.1560 8 6 4.6797 -1.4786 -0.1630 9 7 4.5016 -2.7751 -0.0227 10 14 5.6342 -0.5220 1.1267 11 1 4.7221 -0.1383 2.2340 12 1 6.7312 -1.3689 1.6599 13 1 6.2080 0.7017 0.5113 14 6 4.2163 1.3356 -2.4392 15 6 5.6765 1.7917 -2.4629 16 7 5.9185 2.5924 -3.6656 17 6 7.1431 3.1047 -3.8990 18 8 8.0445 2.9032 -3.1131 19 6 7.3919 3.9288 -5.1359 20 1 7.1757 3.3347 -6.0239 21 6 8.8548 4.3891 -5.1654 22 6 9.0497 5.4186 -6.2806 23 6 8.3783 6.7407 -5.8885 24 6 6.9631 6.4410 -5.4569 25 7 5.9664 7.2680 -5.3308 26 7 4.8450 6.5387 -4.9077 27 1 3.9619 6.9004 -4.7335 28 6 5.2112 5.2430 -4.7853 29 6 6.5126 5.1547 -5.1164 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8524 0.5885 0.8564 36 1 3.9786 2.1782 0.0658 37 1 4.8656 -3.2338 0.7506 38 1 3.5631 2.2083 -2.4319 39 1 4.0091 0.7342 -3.3243 40 1 6.3296 0.9191 -2.4703 41 1 5.8837 2.3932 -1.5778 42 1 5.1974 2.7539 -4.2940 43 1 9.5015 3.5307 -5.3474 44 1 9.1126 4.8396 -4.2069 45 1 10.1153 5.5859 -6.4374 46 1 8.6021 5.0449 -7.2015 47 1 8.9244 7.2004 -5.0649 48 1 8.3665 7.4153 -6.7446 49 1 4.5747 4.4267 -4.4772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332914140.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:39 Heat of formation + Delta-G solvation = 17.055449 kcal Electronic energy + Delta-G solvation = -29776.748563 eV Core-core repulsion = 25741.441593 eV Total energy + Delta-G solvation = -4035.306971 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.83942 -39.44662 -37.54284 -36.58607 -35.89104 -34.28055 -32.59681 -31.59169 -30.84030 -29.71285 -28.83038 -27.65962 -25.75372 -25.17459 -23.68041 -22.67606 -21.95016 -21.50431 -20.59753 -19.89905 -19.02309 -17.91089 -16.91700 -16.77384 -15.99388 -15.84785 -15.57857 -15.40265 -15.09090 -14.90101 -14.72422 -14.39817 -14.22600 -13.93347 -13.73850 -13.35600 -13.21421 -13.02935 -12.73288 -12.54772 -12.36786 -12.17877 -11.87548 -11.54269 -11.45999 -11.37560 -11.20135 -11.09101 -11.03683 -10.79305 -10.63256 -10.56255 -10.30785 -9.77163 -9.73745 -9.63058 -9.48667 -8.96757 -8.73002 -8.64248 -8.47131 -6.92142 -5.90019 -3.34178 1.63996 2.39770 2.57754 2.92458 3.34733 3.42200 3.52973 3.55405 4.18644 4.47183 4.49213 4.58477 4.61619 4.70930 4.79935 4.97369 5.09065 5.23908 5.24691 5.31066 5.36546 5.41844 5.56441 5.60096 5.67957 5.69849 5.70410 5.76545 5.82338 5.86708 5.90055 5.92877 5.98034 6.03731 6.08860 6.15847 6.22046 6.23997 6.36462 6.53358 6.62178 6.67458 6.83349 7.01731 7.41863 7.71357 7.88570 8.09673 8.41145 8.46368 8.97004 9.76258 10.08958 11.25677 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.002990 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.032915 B = 9362.987262 C =10621.415802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.048 3.952 4 C 0.132 3.868 5 N -0.590 5.590 6 C -0.257 4.257 7 H 0.079 0.921 8 C 0.044 3.956 9 N -0.899 5.899 10 Si 0.874 3.126 11 H -0.287 1.287 12 H -0.302 1.302 13 H -0.268 1.268 14 C 0.143 3.857 15 C 0.091 3.909 16 N -0.727 5.727 17 C 0.517 3.483 18 O -0.537 6.537 19 C -0.027 4.027 20 H 0.102 0.898 21 C -0.100 4.100 22 C -0.115 4.115 23 C -0.041 4.041 24 C 0.091 3.909 25 N -0.290 5.290 26 N -0.481 5.481 27 H 0.440 0.560 28 C 0.069 3.931 29 C -0.230 4.230 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.029 0.971 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.262 0.738 38 H 0.040 0.960 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.391 0.609 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 18.303 -12.101 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.032 4.032 4 C 0.006 3.994 5 N -0.312 5.312 6 C -0.386 4.386 7 H 0.097 0.903 8 C -0.157 4.157 9 N -0.540 5.540 10 Si 0.705 3.295 11 H -0.215 1.215 12 H -0.230 1.230 13 H -0.193 1.193 14 C 0.016 3.984 15 C -0.034 4.034 16 N -0.379 5.379 17 C 0.302 3.698 18 O -0.413 6.413 19 C -0.050 4.050 20 H 0.120 0.880 21 C -0.138 4.138 22 C -0.153 4.153 23 C -0.080 4.080 24 C -0.078 4.078 25 N -0.112 5.112 26 N -0.189 5.189 27 H 0.285 0.715 28 C -0.077 4.077 29 C -0.242 4.242 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.092 0.908 41 H 0.075 0.925 42 H 0.225 0.775 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.362 18.984 -11.511 22.204 hybrid contribution -0.566 0.029 0.901 1.064 sum -0.204 19.013 -10.610 21.774 Atomic orbital electron populations 1.22653 0.83715 1.01953 0.98299 1.88298 1.16974 1.26487 1.94801 1.23220 0.97258 0.85091 0.97607 1.21353 0.90402 0.96397 0.91273 1.43922 1.76096 1.04498 1.06673 1.18627 1.37143 0.79970 1.02832 0.90330 1.25326 0.97574 0.94889 0.97871 1.69830 1.45803 1.08688 1.29637 0.87004 0.80084 0.80390 0.82005 1.21543 1.23027 1.19263 1.21060 0.91119 0.94312 0.91922 1.22436 1.00959 0.94626 0.85403 1.46259 1.11492 1.53985 1.26195 1.20495 0.82622 0.79488 0.87202 1.90708 1.43337 1.59538 1.47743 1.19766 0.95828 0.92501 0.96888 0.88004 1.21401 0.93455 0.99164 0.99788 1.21590 1.00731 0.94134 0.98827 1.20181 0.87681 0.98474 1.01644 1.22332 0.95983 0.91031 0.98414 1.77006 0.93230 1.19384 1.21561 1.46295 1.11819 1.05450 1.55363 0.71549 1.22169 0.96460 0.88409 1.00708 1.19683 0.93896 0.95605 1.14982 0.90250 0.95515 0.95246 0.95241 0.94600 0.91680 0.92814 0.92854 0.94179 0.92247 0.90768 0.92546 0.77465 0.90682 0.90577 0.90563 0.91360 0.89661 0.89916 0.80740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.35 -7.47 10.27 -35.23 -0.36 -7.83 16 3 C 0.05 0.88 6.29 37.16 0.23 1.12 16 4 C 0.13 2.75 4.78 -4.04 -0.02 2.73 16 5 N -0.59 -13.21 2.06 -173.23 -0.36 -13.56 16 6 C -0.26 -7.00 9.57 -15.06 -0.14 -7.14 16 7 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 8 C 0.04 1.27 5.33 -17.43 -0.09 1.17 16 9 N -0.90 -27.63 13.97 55.49 0.78 -26.85 16 10 Si 0.87 22.55 24.83 -169.99 -4.22 18.33 16 11 H -0.29 -7.23 6.69 56.52 0.38 -6.86 16 12 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 13 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.14 2.50 5.80 -4.04 -0.02 2.47 16 15 C 0.09 1.61 6.00 -4.04 -0.02 1.58 16 16 N -0.73 -9.80 4.95 -60.30 -0.30 -10.10 16 17 C 0.52 7.61 7.06 -10.99 -0.08 7.53 16 18 O -0.54 -10.37 15.84 5.56 0.09 -10.28 16 19 C -0.03 -0.30 2.89 -92.64 -0.27 -0.57 16 20 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 21 C -0.10 -1.03 4.62 -26.52 -0.12 -1.15 16 22 C -0.11 -0.86 5.86 -26.52 -0.16 -1.02 16 23 C -0.04 -0.34 6.31 -27.56 -0.17 -0.51 16 24 C 0.09 1.00 7.10 -82.34 -0.58 0.41 16 25 N -0.29 -3.36 12.68 33.75 0.43 -2.93 16 26 N -0.48 -4.40 7.37 30.35 0.22 -4.18 16 27 H 0.44 2.63 8.96 -182.44 -1.64 1.00 16 28 C 0.07 0.64 11.01 -17.36 -0.19 0.45 16 29 C -0.23 -2.46 5.41 -104.98 -0.57 -3.03 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 1.56 3.13 -51.93 -0.16 1.39 16 36 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.04 0.58 8.07 -51.93 -0.42 0.16 16 39 H 0.06 1.02 8.04 -51.93 -0.42 0.61 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.39 3.88 6.29 -40.82 -0.26 3.62 16 43 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.08 0.93 7.75 -51.93 -0.40 0.52 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 47 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.18 1.22 6.01 -52.49 -0.32 0.90 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -36.51 390.47 -8.04 -44.56 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -9.10 Total: 1.30 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.10 Total: 5.67 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: 0.77 Total: -57.63 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -0.27 Total: -18.12 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.22 Total: 18.33 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.51 -8.04 -44.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332914140.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.614 kcal (2) G-P(sol) polarization free energy of solvation -36.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds