Wall clock time and date at job start Tue Mar 31 2020 19:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00270 * 2 1 4 4 C 1.52997 * 109.47187 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46897 * 63.64058 * 4 3 2 6 6 C 1.36926 * 120.00225 * 266.79809 * 5 4 3 7 7 H 1.08007 * 120.00222 * 143.23335 * 6 5 4 8 8 C 1.38811 * 120.00314 * 323.23632 * 6 5 4 9 9 N 1.31617 * 120.00294 * 160.07153 * 8 6 5 10 10 Si 1.86801 * 119.99709 * 340.06831 * 8 6 5 11 11 H 1.48497 * 109.47251 * 95.25482 * 10 8 6 12 12 H 1.48499 * 109.46923 * 215.25612 * 10 8 6 13 13 H 1.48506 * 109.46907 * 335.25141 * 10 8 6 14 14 C 1.46508 * 119.99757 * 86.80140 * 5 4 3 15 15 C 1.52996 * 109.47296 * 89.99952 * 14 5 4 16 16 N 1.46499 * 109.47180 * 179.97438 * 15 14 5 17 17 C 1.34771 * 120.00194 * 179.97438 * 16 15 14 18 18 O 1.21282 * 119.99886 * 359.97438 * 17 16 15 19 19 C 1.50695 * 120.00239 * 180.02562 * 17 16 15 20 20 H 1.09005 * 109.74575 * 300.62514 * 19 17 16 21 21 C 1.53390 * 109.71958 * 180.02562 * 19 17 16 22 22 C 1.53025 * 109.71978 * 189.77994 * 21 19 17 23 23 C 1.53377 * 109.74764 * 71.72945 * 22 21 19 24 24 C 1.50960 * 108.20113 * 309.34735 * 23 22 21 25 25 N 1.30123 * 128.28436 * 196.65094 * 24 23 22 26 26 N 1.40309 * 108.12265 * 179.86842 * 25 24 23 27 27 H 0.97001 * 126.01004 * 180.02562 * 26 25 24 28 28 C 1.35198 * 107.99604 * 0.03505 * 26 25 24 29 29 C 1.34577 * 107.61381 * 0.04209 * 28 26 25 30 30 H 1.09004 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47157 * 300.00246 * 1 2 3 32 32 H 1.09000 * 109.46788 * 60.00193 * 1 2 3 33 33 H 1.09001 * 109.47108 * 59.99659 * 3 2 1 34 34 H 1.08999 * 109.47075 * 299.99986 * 3 2 1 35 35 H 1.08998 * 109.47541 * 303.64514 * 4 3 2 36 36 H 1.08993 * 109.47016 * 183.63613 * 4 3 2 37 37 H 0.97007 * 119.99998 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.47136 * 329.99490 * 14 5 4 39 39 H 1.09001 * 109.47000 * 209.99955 * 14 5 4 40 40 H 1.08999 * 109.47080 * 59.99944 * 15 14 5 41 41 H 1.09001 * 109.47099 * 299.99942 * 15 14 5 42 42 H 0.97001 * 119.99602 * 359.97438 * 16 15 14 43 43 H 1.08998 * 109.43456 * 69.70226 * 21 19 17 44 44 H 1.09003 * 109.42874 * 309.85458 * 21 19 17 45 45 H 1.08999 * 109.42568 * 191.80695 * 22 21 19 46 46 H 1.08997 * 109.42907 * 311.70142 * 22 21 19 47 47 H 1.08993 * 109.71854 * 69.02484 * 23 22 21 48 48 H 1.08996 * 109.71802 * 189.67401 * 23 22 21 49 49 H 1.07999 * 126.19743 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9743 0.5344 -1.2367 6 6 4.1584 -0.8220 -1.2694 7 1 3.8980 -1.3812 -2.1560 8 6 4.6797 -1.4786 -0.1630 9 7 4.5016 -2.7751 -0.0227 10 14 5.6342 -0.5220 1.1267 11 1 4.7221 -0.1383 2.2340 12 1 6.7312 -1.3689 1.6599 13 1 6.2080 0.7017 0.5113 14 6 4.2163 1.3356 -2.4392 15 6 5.6765 1.7917 -2.4629 16 7 5.9185 2.5924 -3.6656 17 6 7.1431 3.1047 -3.8990 18 8 8.0445 2.9032 -3.1131 19 6 7.3919 3.9288 -5.1359 20 1 7.1757 3.3347 -6.0239 21 6 8.8548 4.3891 -5.1654 22 6 9.0497 5.4186 -6.2806 23 6 8.3783 6.7407 -5.8885 24 6 6.9631 6.4410 -5.4569 25 7 5.9664 7.2680 -5.3308 26 7 4.8450 6.5387 -4.9077 27 1 3.9619 6.9004 -4.7335 28 6 5.2112 5.2430 -4.7853 29 6 6.5126 5.1547 -5.1164 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8464 -0.8900 35 1 3.8524 0.5885 0.8564 36 1 3.9786 2.1782 0.0658 37 1 4.8656 -3.2338 0.7506 38 1 3.5631 2.2083 -2.4319 39 1 4.0091 0.7342 -3.3243 40 1 6.3296 0.9191 -2.4703 41 1 5.8837 2.3932 -1.5778 42 1 5.1974 2.7539 -4.2940 43 1 9.5015 3.5307 -5.3474 44 1 9.1126 4.8396 -4.2069 45 1 10.1153 5.5859 -6.4374 46 1 8.6021 5.0449 -7.2015 47 1 8.9244 7.2004 -5.0649 48 1 8.3665 7.4153 -6.7446 49 1 4.5747 4.4267 -4.4772 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332914140.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:38 Heat of formation + Delta-G solvation = -10.707004 kcal Electronic energy + Delta-G solvation = -29777.952434 eV Core-core repulsion = 25741.441593 eV Total energy + Delta-G solvation = -4036.510841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.61080 -40.62389 -39.06868 -37.68249 -37.14327 -35.71608 -33.77847 -33.31690 -31.67616 -31.04450 -29.63777 -29.23198 -27.12723 -26.22902 -25.17277 -24.13001 -22.77625 -22.43151 -22.01500 -21.18123 -19.74838 -18.85670 -18.64466 -17.95822 -17.56396 -17.26782 -16.80021 -16.53886 -16.32572 -16.01634 -15.89101 -15.69651 -15.35214 -15.27690 -14.92427 -14.75087 -14.42980 -14.19159 -14.03047 -13.84219 -13.51786 -13.36906 -13.11915 -12.98016 -12.91526 -12.74776 -12.36939 -12.26868 -12.18669 -12.01062 -11.89273 -11.71639 -11.69364 -11.44868 -11.40933 -10.85823 -10.61153 -10.36835 -10.34053 -10.03841 -9.44431 -8.80302 -8.10608 -5.48490 0.90928 1.28067 1.41981 1.48486 1.53675 1.78429 1.96346 2.27537 2.45725 3.13304 3.13722 3.43453 3.52102 3.76657 3.80524 3.95681 4.12174 4.21209 4.25514 4.35982 4.37362 4.40888 4.49792 4.52416 4.56801 4.59079 4.61417 4.64182 4.68728 4.69675 4.72075 4.88630 4.90282 5.00658 5.04651 5.09781 5.16022 5.20295 5.23549 5.26489 5.46427 5.53111 5.64015 6.00145 6.24212 6.41639 6.59411 6.60844 6.69248 7.03150 7.32224 7.69023 8.06284 9.09752 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014953 B = 0.002990 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1872.032915 B = 9362.987262 C =10621.415802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.401 6.401 3 C 0.050 3.950 4 C 0.121 3.879 5 N -0.603 5.603 6 C -0.228 4.228 7 H 0.045 0.955 8 C -0.014 4.014 9 N -0.951 5.951 10 Si 0.933 3.067 11 H -0.279 1.279 12 H -0.318 1.318 13 H -0.261 1.261 14 C 0.147 3.853 15 C 0.108 3.892 16 N -0.710 5.710 17 C 0.514 3.486 18 O -0.588 6.588 19 C -0.016 4.016 20 H 0.127 0.873 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.043 4.043 24 C 0.082 3.918 25 N -0.319 5.319 26 N -0.474 5.474 27 H 0.453 0.547 28 C 0.077 3.923 29 C -0.251 4.251 30 H 0.075 0.925 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.085 0.915 37 H 0.257 0.743 38 H 0.087 0.913 39 H 0.062 0.938 40 H 0.031 0.969 41 H 0.041 0.959 42 H 0.412 0.588 43 H 0.071 0.929 44 H 0.051 0.949 45 H 0.094 0.906 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.097 0.903 49 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.333 21.350 -13.490 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.029 4.029 4 C -0.004 4.004 5 N -0.326 5.326 6 C -0.359 4.359 7 H 0.062 0.938 8 C -0.209 4.209 9 N -0.596 5.596 10 Si 0.764 3.236 11 H -0.206 1.206 12 H -0.248 1.248 13 H -0.185 1.185 14 C 0.020 3.980 15 C -0.019 4.019 16 N -0.364 5.364 17 C 0.301 3.699 18 O -0.468 6.468 19 C -0.038 4.038 20 H 0.145 0.855 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.082 4.082 24 C -0.087 4.087 25 N -0.142 5.142 26 N -0.183 5.183 27 H 0.300 0.700 28 C -0.071 4.071 29 C -0.263 4.263 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.251 0.749 43 H 0.090 0.910 44 H 0.069 0.931 45 H 0.113 0.887 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.116 0.884 49 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -0.991 22.118 -12.940 25.645 hybrid contribution -0.266 -0.856 1.245 1.534 sum -1.256 21.262 -11.695 24.299 Atomic orbital electron populations 1.22802 0.81206 1.02500 1.00307 1.88216 1.19954 1.28561 1.95271 1.23187 0.95058 0.84532 1.00089 1.21488 0.92745 0.96982 0.89135 1.44009 1.76644 1.03241 1.08663 1.18494 1.34160 0.82327 1.00869 0.93761 1.25850 0.99345 0.95434 1.00293 1.69959 1.48453 1.10437 1.30774 0.86050 0.78354 0.78941 0.80273 1.20630 1.24808 1.18495 1.21172 0.91544 0.95345 0.89890 1.21943 1.00113 0.93284 0.86558 1.45982 1.12177 1.52871 1.25326 1.21252 0.81917 0.78946 0.87746 1.90691 1.44957 1.61383 1.49730 1.19721 0.96357 0.92344 0.95348 0.85548 1.21409 0.93082 0.99739 0.99708 1.21545 1.01975 0.92789 0.97912 1.20295 0.86533 0.99140 1.02188 1.22729 0.96790 0.91034 0.98102 1.76965 0.94082 1.20365 1.22770 1.46339 1.12057 1.05342 1.54559 0.70023 1.22515 0.96282 0.88930 0.99334 1.19747 0.94557 0.95376 1.16602 0.90638 0.93292 0.93245 0.92550 0.92041 0.94895 0.89677 0.93394 0.89525 0.91964 0.95013 0.94007 0.74941 0.90998 0.93056 0.88748 0.90171 0.89741 0.88442 0.78404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.40 -16.55 10.27 -148.98 -1.53 -18.08 16 3 C 0.05 1.67 6.29 71.98 0.45 2.12 16 4 C 0.12 4.78 4.78 86.38 0.41 5.19 16 5 N -0.60 -26.14 2.06 -701.99 -1.45 -27.59 16 6 C -0.23 -12.61 9.57 84.04 0.80 -11.80 16 7 H 0.04 2.72 8.06 -2.91 -0.02 2.69 16 8 C -0.01 -0.80 5.33 84.86 0.45 -0.35 16 9 N -0.95 -60.86 13.97 21.65 0.30 -60.56 16 10 Si 0.93 48.05 24.83 68.60 1.70 49.75 16 11 H -0.28 -13.75 6.69 99.48 0.67 -13.09 16 12 H -0.32 -17.03 7.11 99.48 0.71 -16.32 16 13 H -0.26 -12.86 7.11 99.48 0.71 -12.16 16 14 C 0.15 4.72 5.80 86.38 0.50 5.22 16 15 C 0.11 3.66 6.00 86.38 0.52 4.18 16 16 N -0.71 -17.59 4.95 -463.08 -2.29 -19.88 16 17 C 0.51 14.52 7.06 87.66 0.62 15.14 16 18 O -0.59 -22.88 15.84 -3.04 -0.05 -22.93 16 19 C -0.02 -0.31 2.89 -12.10 -0.04 -0.34 16 20 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 21 C -0.10 -1.97 4.62 30.73 0.14 -1.82 16 22 C -0.10 -1.33 5.86 30.73 0.18 -1.15 16 23 C -0.04 -0.62 6.31 30.06 0.19 -0.43 16 24 C 0.08 1.62 7.10 43.44 0.31 1.93 16 25 N -0.32 -6.75 12.68 -47.13 -0.60 -7.35 16 26 N -0.47 -7.33 7.37 -57.88 -0.43 -7.76 16 27 H 0.45 4.09 8.96 -213.18 -1.91 2.18 16 28 C 0.08 1.18 11.01 83.34 0.92 2.09 16 29 C -0.25 -4.74 5.41 -20.10 -0.11 -4.85 16 30 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.03 1.53 3.13 -2.39 -0.01 1.52 16 36 H 0.09 2.78 8.10 -2.39 -0.02 2.76 16 37 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 38 H 0.09 2.05 8.07 -2.38 -0.02 2.03 16 39 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 40 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.41 6.67 6.29 -92.71 -0.58 6.08 16 43 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.05 1.25 7.75 -2.39 -0.02 1.23 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.08 0.86 8.10 -2.39 -0.02 0.84 16 47 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 49 H 0.20 1.87 6.01 -2.91 -0.02 1.86 16 Total: -1.00 -84.03 390.47 0.70 -83.33 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -1.56 Total: 13.84 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 6.60 Total: 17.22 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -4.46 Total: -123.14 kcal Atomic # 8 Polarization: -39.43 SS G_CDS: -1.58 Total: -41.01 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 1.70 Total: 49.75 kcal Total: -84.03 0.70 -83.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332914140.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.625 kcal (2) G-P(sol) polarization free energy of solvation -84.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds