Wall clock time and date at job start Tue Mar 31 2020 19:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00029 * 2 1 4 4 C 1.53005 * 109.47283 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46946 * 64.99559 * 4 3 2 6 6 C 1.36940 * 120.00202 * 274.46280 * 5 4 3 7 7 H 1.07989 * 119.99831 * 146.16944 * 6 5 4 8 8 C 1.38818 * 119.99834 * 326.17454 * 6 5 4 9 9 N 1.31617 * 120.00196 * 335.31233 * 8 6 5 10 10 Si 1.86798 * 119.99831 * 155.31048 * 8 6 5 11 11 H 1.48493 * 109.47097 * 89.99857 * 10 8 6 12 12 H 1.48499 * 109.47071 * 210.00108 * 10 8 6 13 13 H 1.48504 * 109.47150 * 329.99958 * 10 8 6 14 14 C 1.46499 * 119.99743 * 94.47030 * 5 4 3 15 15 C 1.53001 * 109.47047 * 269.99494 * 14 5 4 16 16 N 1.46501 * 109.47351 * 180.02562 * 15 14 5 17 17 C 1.34774 * 119.99965 * 179.97438 * 16 15 14 18 18 O 1.21275 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99650 * 179.97438 * 17 16 15 20 20 H 1.09004 * 109.71380 * 59.39637 * 19 17 16 21 21 C 1.53392 * 109.71870 * 180.02562 * 19 17 16 22 22 C 1.53026 * 109.72160 * 170.21791 * 21 19 17 23 23 C 1.53369 * 109.75345 * 288.28167 * 22 21 19 24 24 C 1.50957 * 108.20260 * 50.65440 * 23 22 21 25 25 N 1.30127 * 128.28160 * 163.22126 * 24 23 22 26 26 N 1.40314 * 108.11884 * 180.16153 * 25 24 23 27 27 H 0.96998 * 126.00130 * 179.97438 * 26 25 24 28 28 C 1.35197 * 107.99465 * 0.26015 * 26 25 24 29 29 C 1.34574 * 107.61600 * 359.54382 * 28 26 25 30 30 H 1.08997 * 109.47120 * 60.00307 * 1 2 3 31 31 H 1.09003 * 109.46852 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47076 * 300.00149 * 1 2 3 33 33 H 1.08996 * 109.47393 * 59.99691 * 3 2 1 34 34 H 1.09004 * 109.46822 * 299.99738 * 3 2 1 35 35 H 1.08997 * 109.46811 * 304.99760 * 4 3 2 36 36 H 1.08996 * 109.47177 * 184.99517 * 4 3 2 37 37 H 0.96997 * 120.00132 * 180.02562 * 9 8 6 38 38 H 1.09006 * 109.47098 * 149.99663 * 14 5 4 39 39 H 1.08997 * 109.47077 * 29.99666 * 14 5 4 40 40 H 1.08996 * 109.46918 * 60.00101 * 15 14 5 41 41 H 1.09003 * 109.47062 * 300.00392 * 15 14 5 42 42 H 0.97000 * 119.99845 * 359.97438 * 16 15 14 43 43 H 1.09005 * 109.42278 * 50.14625 * 21 19 17 44 44 H 1.08995 * 109.43202 * 290.29952 * 21 19 17 45 45 H 1.09007 * 109.42315 * 168.19813 * 22 21 19 46 46 H 1.08997 * 109.42118 * 48.37441 * 22 21 19 47 47 H 1.08997 * 109.71749 * 290.97686 * 23 22 21 48 48 H 1.08995 * 109.75169 * 170.35271 * 23 22 21 49 49 H 1.08004 * 126.19230 * 179.69647 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0093 -0.7999 -1.3662 7 1 3.7902 -1.2684 -2.3142 8 6 4.3248 -1.5806 -0.2626 9 7 5.0420 -1.0745 0.7182 10 14 3.7315 -3.3494 -0.1694 11 1 4.7459 -4.2446 -0.7814 12 1 3.5290 -3.7293 1.2518 13 1 2.4478 -3.4803 -0.9045 14 6 4.3801 1.4036 -2.3834 15 6 3.1610 1.7024 -3.2584 16 7 3.5655 2.5411 -4.3894 17 6 2.6513 2.9319 -5.2993 18 8 1.4938 2.5897 -5.1816 19 6 3.0673 3.7952 -6.4624 20 1 3.8274 3.2797 -7.0495 21 6 1.8490 4.0982 -7.3438 22 6 2.2133 5.1641 -8.3795 23 6 2.3693 6.5251 -7.6899 24 6 3.2973 6.3531 -6.5117 25 7 3.9307 7.2727 -5.8435 26 7 4.6781 6.6435 -4.8363 27 1 5.2472 7.0863 -4.1876 28 6 4.4706 5.3110 -4.9329 29 6 3.6179 5.1045 -5.9534 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8514 0.5683 0.8409 36 1 3.9785 2.1765 0.0888 37 1 5.2628 -1.6201 1.4892 38 1 5.1317 0.8799 -2.9741 39 1 4.7977 2.3388 -2.0105 40 1 2.4094 2.2260 -2.6677 41 1 2.7434 0.7671 -3.6311 42 1 4.4912 2.8152 -4.4833 43 1 1.0323 4.4624 -6.7205 44 1 1.5359 3.1879 -7.8550 45 1 1.4243 5.2259 -9.1291 46 1 3.1516 4.8934 -8.8637 47 1 1.3969 6.8757 -7.3440 48 1 2.7926 7.2461 -8.3892 49 1 4.9078 4.5502 -4.3033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332914147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:44 Heat of formation + Delta-G solvation = 10.316366 kcal Electronic energy + Delta-G solvation = -29950.625945 eV Core-core repulsion = 25915.026745 eV Total energy + Delta-G solvation = -4035.599199 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.81398 -39.43552 -37.28763 -36.53386 -35.68196 -34.20694 -32.58613 -31.36760 -30.75140 -29.36745 -28.80831 -27.42023 -25.60674 -25.10571 -23.85566 -22.29635 -21.83505 -21.19555 -20.63108 -19.93015 -19.00795 -17.88487 -16.93349 -16.66689 -15.85321 -15.57379 -15.50540 -15.16259 -14.92193 -14.80488 -14.53631 -14.37044 -14.03600 -13.93332 -13.45851 -13.41069 -13.15144 -13.10424 -12.76201 -12.43338 -12.17859 -11.91738 -11.79601 -11.44676 -11.22215 -11.17410 -11.03189 -10.86238 -10.75756 -10.66451 -10.60573 -10.56111 -10.04811 -9.97080 -9.72027 -9.70060 -9.60479 -8.82430 -8.66408 -8.59002 -8.39731 -6.63448 -5.73062 -3.25711 1.67154 2.41903 2.60844 2.93087 3.42767 3.47000 3.52768 3.61593 4.20504 4.49978 4.58059 4.62494 4.74103 4.75291 4.82199 5.09939 5.23881 5.25389 5.31844 5.36196 5.39634 5.53890 5.58198 5.69663 5.76855 5.79956 5.82544 5.86441 5.90954 5.92400 5.98494 6.09686 6.18027 6.23539 6.28362 6.30016 6.38820 6.57016 6.62467 6.67860 6.69362 6.92690 7.05087 7.44655 7.65702 7.73731 7.88197 8.12510 8.45299 8.55325 9.20221 9.86661 10.36804 11.28587 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.002751 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.661912 B =10176.115426 C =10419.227245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.351 6.351 3 C 0.046 3.954 4 C 0.137 3.863 5 N -0.570 5.570 6 C -0.246 4.246 7 H 0.058 0.942 8 C 0.023 3.977 9 N -0.890 5.890 10 Si 0.898 3.102 11 H -0.292 1.292 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.138 3.862 15 C 0.094 3.906 16 N -0.726 5.726 17 C 0.517 3.483 18 O -0.540 6.540 19 C -0.027 4.027 20 H 0.101 0.899 21 C -0.099 4.099 22 C -0.115 4.115 23 C -0.040 4.040 24 C 0.091 3.909 25 N -0.290 5.290 26 N -0.481 5.481 27 H 0.441 0.559 28 C 0.071 3.929 29 C -0.231 4.231 30 H 0.030 0.970 31 H 0.074 0.926 32 H 0.025 0.975 33 H 0.023 0.977 34 H 0.029 0.971 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.253 0.747 38 H 0.055 0.945 39 H 0.036 0.964 40 H 0.057 0.943 41 H 0.066 0.934 42 H 0.392 0.608 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.082 0.918 49 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.769 14.683 -13.181 19.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C -0.033 4.033 4 C 0.011 3.989 5 N -0.290 5.290 6 C -0.375 4.375 7 H 0.076 0.924 8 C -0.176 4.176 9 N -0.534 5.534 10 Si 0.728 3.272 11 H -0.219 1.219 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.010 3.990 15 C -0.031 4.031 16 N -0.378 5.378 17 C 0.303 3.697 18 O -0.416 6.416 19 C -0.050 4.050 20 H 0.119 0.881 21 C -0.137 4.137 22 C -0.153 4.153 23 C -0.079 4.079 24 C -0.078 4.078 25 N -0.112 5.112 26 N -0.189 5.189 27 H 0.285 0.715 28 C -0.076 4.076 29 C -0.243 4.243 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.044 0.956 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.125 0.875 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.226 0.774 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.103 0.897 48 H 0.101 0.899 49 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -2.183 15.392 -12.765 20.116 hybrid contribution 0.006 -1.184 0.628 1.340 sum -2.177 14.209 -12.138 18.814 Atomic orbital electron populations 1.22638 0.84328 1.01457 0.98425 1.88230 1.16462 1.27384 1.94793 1.23451 0.98639 0.84352 0.96836 1.21153 0.87928 0.96449 0.93393 1.43577 1.74089 1.02385 1.08934 1.18810 1.40984 0.80693 0.96995 0.92399 1.24871 0.96843 0.97696 0.98235 1.69962 1.36286 1.36773 1.10330 0.86387 0.79096 0.84859 0.76844 1.21897 1.21721 1.20252 1.21003 0.92849 0.94617 0.90530 1.22475 1.00503 0.93814 0.86315 1.46252 1.11421 1.53246 1.26911 1.20476 0.85824 0.80133 0.83304 1.90691 1.18606 1.56551 1.75779 1.19760 0.99028 0.91326 0.94861 0.88072 1.21394 0.96507 0.99219 0.96615 1.21587 1.02346 0.93586 0.97766 1.20171 0.97028 0.98546 0.92204 1.22321 0.97505 0.90492 0.97486 1.77007 1.11254 1.20905 1.02041 1.46302 1.39646 1.04699 1.28205 0.71488 1.22188 0.99137 0.87105 0.99169 1.19669 1.06944 0.95242 1.02463 0.95167 0.90775 0.95639 0.95931 0.95321 0.87471 0.94238 0.93740 0.92680 0.94598 0.92448 0.91545 0.77416 0.90590 0.90756 0.90596 0.91371 0.89682 0.89925 0.80692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -8.00 9.96 -35.23 -0.35 -8.35 16 3 C 0.05 0.96 6.28 37.16 0.23 1.19 16 4 C 0.14 3.10 5.83 -4.04 -0.02 3.08 16 5 N -0.57 -13.40 2.45 -173.24 -0.43 -13.82 16 6 C -0.25 -6.56 8.75 -15.06 -0.13 -6.69 16 7 H 0.06 1.57 7.94 -52.49 -0.42 1.16 16 8 C 0.02 0.64 4.95 -17.43 -0.09 0.55 16 9 N -0.89 -25.20 11.36 55.49 0.63 -24.57 16 10 Si 0.90 22.27 29.62 -169.99 -5.04 17.24 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 13 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 14 C 0.14 2.58 5.82 -4.04 -0.02 2.56 16 15 C 0.09 1.66 6.00 -4.04 -0.02 1.64 16 16 N -0.73 -9.93 4.96 -60.30 -0.30 -10.23 16 17 C 0.52 7.56 7.07 -10.99 -0.08 7.48 16 18 O -0.54 -10.18 15.84 5.56 0.09 -10.09 16 19 C -0.03 -0.30 2.90 -92.63 -0.27 -0.57 16 20 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 21 C -0.10 -1.01 4.62 -26.52 -0.12 -1.13 16 22 C -0.11 -0.86 5.86 -26.53 -0.16 -1.02 16 23 C -0.04 -0.34 6.31 -27.57 -0.17 -0.51 16 24 C 0.09 1.01 7.10 -82.34 -0.58 0.42 16 25 N -0.29 -3.44 12.68 33.75 0.43 -3.01 16 26 N -0.48 -4.60 7.37 30.35 0.22 -4.37 16 27 H 0.44 2.86 8.96 -182.44 -1.64 1.22 16 28 C 0.07 0.69 11.02 -17.37 -0.19 0.50 16 29 C -0.23 -2.52 5.41 -104.98 -0.57 -3.09 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.03 0.58 6.47 -51.93 -0.34 0.24 16 35 H 0.11 2.82 5.37 -51.93 -0.28 2.54 16 36 H 0.04 0.80 7.84 -51.93 -0.41 0.39 16 37 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 38 H 0.05 1.03 8.04 -51.93 -0.42 0.62 16 39 H 0.04 0.60 7.86 -51.93 -0.41 0.19 16 40 H 0.06 1.10 6.47 -51.93 -0.34 0.77 16 41 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 42 H 0.39 4.11 6.28 -40.82 -0.26 3.85 16 43 H 0.08 0.91 7.75 -51.93 -0.40 0.51 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 46 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.18 1.34 6.01 -52.48 -0.32 1.02 16 LS Contribution 391.31 15.07 5.90 5.90 Total: -1.00 -34.21 391.31 -8.92 -43.13 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -8.99 Total: 2.14 kcal Atomic # 6 Polarization: 7.13 SS G_CDS: -1.09 Total: 6.05 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.56 Total: -56.01 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -0.26 Total: -18.45 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.04 Total: 17.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.21 -8.92 -43.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332914147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.449 kcal (2) G-P(sol) polarization free energy of solvation -34.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds