Wall clock time and date at job start Tue Mar 31 2020 19:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00029 * 2 1 4 4 C 1.53005 * 109.47283 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46946 * 64.99559 * 4 3 2 6 6 C 1.36940 * 120.00202 * 274.46280 * 5 4 3 7 7 H 1.07989 * 119.99831 * 146.16944 * 6 5 4 8 8 C 1.38818 * 119.99834 * 326.17454 * 6 5 4 9 9 N 1.31617 * 120.00196 * 335.31233 * 8 6 5 10 10 Si 1.86798 * 119.99831 * 155.31048 * 8 6 5 11 11 H 1.48493 * 109.47097 * 89.99857 * 10 8 6 12 12 H 1.48499 * 109.47071 * 210.00108 * 10 8 6 13 13 H 1.48504 * 109.47150 * 329.99958 * 10 8 6 14 14 C 1.46499 * 119.99743 * 94.47030 * 5 4 3 15 15 C 1.53001 * 109.47047 * 269.99494 * 14 5 4 16 16 N 1.46501 * 109.47351 * 180.02562 * 15 14 5 17 17 C 1.34774 * 119.99965 * 179.97438 * 16 15 14 18 18 O 1.21275 * 120.00126 * 0.02562 * 17 16 15 19 19 C 1.50696 * 119.99650 * 179.97438 * 17 16 15 20 20 H 1.09004 * 109.71380 * 59.39637 * 19 17 16 21 21 C 1.53392 * 109.71870 * 180.02562 * 19 17 16 22 22 C 1.53026 * 109.72160 * 170.21791 * 21 19 17 23 23 C 1.53369 * 109.75345 * 288.28167 * 22 21 19 24 24 C 1.50957 * 108.20260 * 50.65440 * 23 22 21 25 25 N 1.30127 * 128.28160 * 163.22126 * 24 23 22 26 26 N 1.40314 * 108.11884 * 180.16153 * 25 24 23 27 27 H 0.96998 * 126.00130 * 179.97438 * 26 25 24 28 28 C 1.35197 * 107.99465 * 0.26015 * 26 25 24 29 29 C 1.34574 * 107.61600 * 359.54382 * 28 26 25 30 30 H 1.08997 * 109.47120 * 60.00307 * 1 2 3 31 31 H 1.09003 * 109.46852 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47076 * 300.00149 * 1 2 3 33 33 H 1.08996 * 109.47393 * 59.99691 * 3 2 1 34 34 H 1.09004 * 109.46822 * 299.99738 * 3 2 1 35 35 H 1.08997 * 109.46811 * 304.99760 * 4 3 2 36 36 H 1.08996 * 109.47177 * 184.99517 * 4 3 2 37 37 H 0.96997 * 120.00132 * 180.02562 * 9 8 6 38 38 H 1.09006 * 109.47098 * 149.99663 * 14 5 4 39 39 H 1.08997 * 109.47077 * 29.99666 * 14 5 4 40 40 H 1.08996 * 109.46918 * 60.00101 * 15 14 5 41 41 H 1.09003 * 109.47062 * 300.00392 * 15 14 5 42 42 H 0.97000 * 119.99845 * 359.97438 * 16 15 14 43 43 H 1.09005 * 109.42278 * 50.14625 * 21 19 17 44 44 H 1.08995 * 109.43202 * 290.29952 * 21 19 17 45 45 H 1.09007 * 109.42315 * 168.19813 * 22 21 19 46 46 H 1.08997 * 109.42118 * 48.37441 * 22 21 19 47 47 H 1.08997 * 109.71749 * 290.97686 * 23 22 21 48 48 H 1.08995 * 109.75169 * 170.35271 * 23 22 21 49 49 H 1.08004 * 126.19230 * 179.69647 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5643 -1.2527 6 6 4.0093 -0.7999 -1.3662 7 1 3.7902 -1.2684 -2.3142 8 6 4.3248 -1.5806 -0.2626 9 7 5.0420 -1.0745 0.7182 10 14 3.7315 -3.3494 -0.1694 11 1 4.7459 -4.2446 -0.7814 12 1 3.5290 -3.7293 1.2518 13 1 2.4478 -3.4803 -0.9045 14 6 4.3801 1.4036 -2.3834 15 6 3.1610 1.7024 -3.2584 16 7 3.5655 2.5411 -4.3894 17 6 2.6513 2.9319 -5.2993 18 8 1.4938 2.5897 -5.1816 19 6 3.0673 3.7952 -6.4624 20 1 3.8274 3.2797 -7.0495 21 6 1.8490 4.0982 -7.3438 22 6 2.2133 5.1641 -8.3795 23 6 2.3693 6.5251 -7.6899 24 6 3.2973 6.3531 -6.5117 25 7 3.9307 7.2727 -5.8435 26 7 4.6781 6.6435 -4.8363 27 1 5.2472 7.0863 -4.1876 28 6 4.4706 5.3110 -4.9329 29 6 3.6179 5.1045 -5.9534 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8901 35 1 3.8514 0.5683 0.8409 36 1 3.9785 2.1765 0.0888 37 1 5.2628 -1.6201 1.4892 38 1 5.1317 0.8799 -2.9741 39 1 4.7977 2.3388 -2.0105 40 1 2.4094 2.2260 -2.6677 41 1 2.7434 0.7671 -3.6311 42 1 4.4912 2.8152 -4.4833 43 1 1.0323 4.4624 -6.7205 44 1 1.5359 3.1879 -7.8550 45 1 1.4243 5.2259 -9.1291 46 1 3.1516 4.8934 -8.8637 47 1 1.3969 6.8757 -7.3440 48 1 2.7926 7.2461 -8.3892 49 1 4.9078 4.5502 -4.3033 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332914147.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:43 Heat of formation + Delta-G solvation = -13.472880 kcal Electronic energy + Delta-G solvation = -29951.657524 eV Core-core repulsion = 25915.026745 eV Total energy + Delta-G solvation = -4036.630778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.61347 -40.61613 -38.93728 -37.56763 -37.08819 -35.68383 -33.63989 -33.07101 -31.60221 -30.88349 -29.62800 -29.02058 -27.17245 -26.19945 -25.37698 -23.58490 -22.68700 -22.30305 -22.16902 -21.22260 -19.74910 -18.82242 -18.57341 -17.91014 -17.43277 -16.89837 -16.62458 -16.51663 -16.39692 -15.95024 -15.88081 -15.59839 -15.39720 -15.14307 -14.98537 -14.63574 -14.44431 -14.05172 -13.79516 -13.58367 -13.42837 -13.36647 -13.00827 -12.92998 -12.68505 -12.45847 -12.39421 -12.28885 -12.19174 -12.00467 -11.92768 -11.72460 -11.69644 -11.53981 -11.42983 -10.87349 -10.44223 -10.37734 -10.34754 -9.99244 -9.44923 -8.57787 -7.76083 -5.30551 0.90178 1.45749 1.50945 1.53504 1.61227 1.78639 1.96102 2.28664 2.61988 3.19886 3.37122 3.44784 3.71705 3.79005 3.80774 3.96370 4.12596 4.23764 4.32597 4.36445 4.41387 4.48470 4.51488 4.52871 4.57222 4.59121 4.69445 4.71448 4.72682 4.79987 4.88244 4.89448 4.95425 5.04960 5.13325 5.16259 5.20795 5.25844 5.26984 5.48349 5.54863 5.64288 5.73674 5.83849 6.40265 6.45347 6.60894 6.65609 6.68634 7.23617 7.31434 7.93636 8.39315 9.20881 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.002751 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.661912 B =10176.115426 C =10419.227245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.053 3.947 4 C 0.135 3.865 5 N -0.586 5.586 6 C -0.243 4.243 7 H 0.045 0.955 8 C -0.017 4.017 9 N -0.913 5.913 10 Si 0.941 3.059 11 H -0.286 1.286 12 H -0.295 1.295 13 H -0.283 1.283 14 C 0.142 3.858 15 C 0.118 3.882 16 N -0.712 5.712 17 C 0.516 3.484 18 O -0.586 6.586 19 C -0.016 4.016 20 H 0.126 0.874 21 C -0.100 4.100 22 C -0.105 4.105 23 C -0.042 4.042 24 C 0.082 3.918 25 N -0.319 5.319 26 N -0.475 5.475 27 H 0.453 0.547 28 C 0.075 3.925 29 C -0.250 4.250 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.248 0.752 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.043 0.957 41 H 0.032 0.968 42 H 0.410 0.590 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.095 0.905 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.409 16.007 -14.389 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.009 3.991 5 N -0.306 5.306 6 C -0.373 4.373 7 H 0.063 0.937 8 C -0.214 4.214 9 N -0.557 5.557 10 Si 0.771 3.229 11 H -0.213 1.213 12 H -0.222 1.222 13 H -0.209 1.209 14 C 0.015 3.985 15 C -0.009 4.009 16 N -0.365 5.365 17 C 0.303 3.697 18 O -0.466 6.466 19 C -0.038 4.038 20 H 0.144 0.856 21 C -0.138 4.138 22 C -0.142 4.142 23 C -0.081 4.081 24 C -0.086 4.086 25 N -0.142 5.142 26 N -0.184 5.184 27 H 0.299 0.701 28 C -0.072 4.072 29 C -0.262 4.262 30 H 0.053 0.947 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.248 0.752 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.114 0.886 46 H 0.098 0.902 47 H 0.103 0.897 48 H 0.116 0.884 49 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -1.789 16.759 -13.994 21.907 hybrid contribution -0.145 -1.537 0.991 1.835 sum -1.934 15.222 -13.003 20.113 Atomic orbital electron populations 1.22793 0.82058 1.02458 0.99770 1.88154 1.19122 1.28675 1.95109 1.23335 0.97303 0.83980 0.97982 1.21102 0.89399 0.96685 0.91900 1.43720 1.74609 1.01928 1.10350 1.18862 1.39548 0.82549 0.96334 0.93713 1.25310 0.97641 1.00017 0.98446 1.70051 1.37616 1.37428 1.10654 0.85713 0.78437 0.82525 0.76263 1.21286 1.22166 1.20876 1.21069 0.93049 0.95131 0.89273 1.21903 0.99399 0.92663 0.86932 1.46028 1.12474 1.52321 1.25708 1.21205 0.85057 0.79643 0.83807 1.90674 1.20682 1.58317 1.76898 1.19734 0.99928 0.90841 0.93328 0.85634 1.21402 0.95480 1.00072 0.96841 1.21547 1.03585 0.91992 0.97117 1.20300 0.96615 0.99426 0.91784 1.22754 0.97490 0.90366 0.98009 1.76966 1.12320 1.21825 1.03040 1.46352 1.39353 1.04726 1.27962 0.70084 1.22500 0.98419 0.87514 0.98791 1.19754 1.07909 0.95087 1.03466 0.94659 0.90080 0.93300 0.93686 0.94978 0.90899 0.91917 0.94238 0.92619 0.91582 0.93914 0.94994 0.75192 0.92980 0.90833 0.88627 0.90228 0.89654 0.88448 0.78758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 11.01 113.37 1.25 2.15 16 2 O -0.39 -17.73 9.96 -148.98 -1.48 -19.21 16 3 C 0.05 2.13 6.28 71.98 0.45 2.58 16 4 C 0.14 6.03 5.83 86.38 0.50 6.53 16 5 N -0.59 -27.27 2.45 -702.00 -1.72 -28.99 16 6 C -0.24 -13.03 8.75 84.03 0.73 -12.30 16 7 H 0.05 2.48 7.94 -2.92 -0.02 2.46 16 8 C -0.02 -0.94 4.95 84.86 0.42 -0.52 16 9 N -0.91 -52.14 11.36 21.65 0.25 -51.89 16 10 Si 0.94 46.19 29.62 68.60 2.03 48.22 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 13 H -0.28 -13.99 7.11 99.48 0.71 -13.29 16 14 C 0.14 5.09 5.82 86.38 0.50 5.60 16 15 C 0.12 4.07 6.00 86.38 0.52 4.59 16 16 N -0.71 -18.36 4.96 -463.07 -2.30 -20.65 16 17 C 0.52 14.56 7.07 87.66 0.62 15.18 16 18 O -0.59 -22.24 15.84 -3.02 -0.05 -22.28 16 19 C -0.02 -0.32 2.90 -12.10 -0.04 -0.36 16 20 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 21 C -0.10 -1.90 4.62 30.73 0.14 -1.76 16 22 C -0.10 -1.31 5.86 30.73 0.18 -1.13 16 23 C -0.04 -0.62 6.31 30.05 0.19 -0.43 16 24 C 0.08 1.68 7.10 43.44 0.31 1.99 16 25 N -0.32 -7.06 12.68 -47.13 -0.60 -7.66 16 26 N -0.47 -8.13 7.37 -57.88 -0.43 -8.56 16 27 H 0.45 4.97 8.96 -213.18 -1.91 3.06 16 28 C 0.08 1.28 11.02 83.33 0.92 2.20 16 29 C -0.25 -4.95 5.41 -20.10 -0.11 -5.06 16 30 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.03 1.26 6.47 -2.39 -0.02 1.25 16 35 H 0.07 3.85 5.37 -2.39 -0.01 3.84 16 36 H 0.06 2.43 7.84 -2.39 -0.02 2.41 16 37 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 38 H 0.06 2.00 8.04 -2.38 -0.02 1.98 16 39 H 0.07 2.00 7.86 -2.39 -0.02 1.98 16 40 H 0.04 1.62 6.47 -2.39 -0.02 1.61 16 41 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.41 7.51 6.28 -92.71 -0.58 6.93 16 43 H 0.05 1.24 7.75 -2.38 -0.02 1.22 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.08 0.85 8.10 -2.39 -0.02 0.83 16 47 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.20 2.35 6.01 -2.91 -0.02 2.33 16 Total: -1.00 -75.07 391.31 0.78 -74.30 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -1.52 Total: 17.49 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 6.59 Total: 19.25 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -4.80 Total: -117.76 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.53 Total: -41.50 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.07 0.78 -74.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332914147.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.824 kcal (2) G-P(sol) polarization free energy of solvation -75.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds