Wall clock time and date at job start Tue Mar 31 2020 19:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86791 * 119.99959 * 2 1 4 4 H 1.48495 * 109.47410 * 240.00482 * 3 2 1 5 5 H 1.48499 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47019 * 120.00304 * 3 2 1 7 7 C 1.38799 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99654 * 185.21005 * 7 2 1 9 9 N 1.36924 * 120.00375 * 5.20720 * 7 2 1 10 10 C 1.38217 * 120.00231 * 70.20266 * 9 7 2 11 11 N 1.31573 * 126.46294 * 186.87248 * 10 9 7 12 12 N 1.28414 * 110.50212 * 179.97438 * 11 10 9 13 13 N 1.28908 * 110.35373 * 0.02562 * 12 11 10 14 14 N 1.35439 * 126.45956 * 6.55735 * 10 9 7 15 15 C 1.46499 * 127.38485 * 0.02562 * 14 10 9 16 16 C 1.53004 * 109.47417 * 83.02071 * 15 14 10 17 17 N 1.46906 * 109.47098 * 180.02562 * 16 15 14 18 18 C 1.47013 * 110.99792 * 293.63683 * 17 16 15 19 19 C 1.53101 * 109.25781 * 177.60624 * 18 17 16 20 20 O 1.43020 * 109.25465 * 56.85053 * 19 18 17 21 21 C 1.43013 * 113.73571 * 301.32947 * 20 19 18 22 22 C 1.47011 * 110.99911 * 170.00285 * 17 16 15 23 23 C 1.46506 * 120.00252 * 250.20296 * 9 7 2 24 24 C 1.54889 * 110.75393 * 295.18261 * 23 9 7 25 25 C 1.54264 * 104.31468 * 156.31968 * 24 23 9 26 26 C 1.53875 * 106.59940 * 336.32405 * 25 24 23 27 27 C 1.54269 * 106.59828 * 359.97438 * 26 25 24 28 28 H 0.97000 * 120.00308 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47294 * 203.02674 * 15 14 10 30 30 H 1.09005 * 109.47117 * 323.02668 * 15 14 10 31 31 H 1.08994 * 109.46975 * 300.00197 * 16 15 14 32 32 H 1.09002 * 109.46813 * 60.00627 * 16 15 14 33 33 H 1.08995 * 109.50744 * 297.54243 * 18 17 16 34 34 H 1.09006 * 109.50921 * 57.67626 * 18 17 16 35 35 H 1.08999 * 109.50816 * 296.91379 * 19 18 17 36 36 H 1.09004 * 109.54341 * 176.80172 * 19 18 17 37 37 H 1.09000 * 109.50660 * 298.73185 * 21 20 19 38 38 H 1.09003 * 109.54035 * 178.62901 * 21 20 19 39 39 H 1.08995 * 109.50364 * 302.32747 * 22 17 16 40 40 H 1.09002 * 109.50747 * 62.41470 * 22 17 16 41 41 H 1.08999 * 110.81775 * 171.84422 * 23 9 7 42 42 H 1.08998 * 110.48767 * 37.57704 * 24 23 9 43 43 H 1.09003 * 110.48904 * 275.06324 * 24 23 9 44 44 H 1.09001 * 110.03224 * 95.60393 * 25 24 23 45 45 H 1.09001 * 110.03615 * 216.98851 * 25 24 23 46 46 H 1.08998 * 110.03671 * 119.27762 * 26 25 24 47 47 H 1.09003 * 110.03537 * 240.71279 * 26 25 24 48 48 H 1.08997 * 110.48823 * 142.28437 * 27 26 25 49 49 H 1.08999 * 110.48779 * 264.80160 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0096 -1.2021 -0.0005 8 1 3.0864 -1.2040 0.0844 9 7 1.3293 -2.3854 -0.1087 10 6 0.7240 -2.7279 -1.3031 11 7 -0.0619 -3.7621 -1.5131 12 7 -0.4550 -3.7873 -2.7354 13 7 0.0406 -2.7912 -3.3864 14 7 0.8233 -2.0591 -2.4766 15 6 1.5858 -0.8366 -2.7419 16 6 3.0465 -1.1968 -3.0203 17 7 3.8112 0.0291 -3.2857 18 6 3.3702 0.6648 -4.5358 19 6 4.1493 1.9665 -4.7426 20 8 5.5509 1.6819 -4.7450 21 6 6.0146 1.0628 -3.5421 22 6 5.2545 -0.2479 -3.3232 23 6 1.2428 -3.2885 1.0417 24 6 2.6438 -3.8287 1.4219 25 6 2.5118 -4.2180 2.9087 26 6 1.3517 -3.3841 3.4802 27 6 0.8196 -2.5167 2.3207 28 1 -0.4850 0.8400 0.0004 29 1 1.1655 -0.3272 -3.6090 30 1 1.5328 -0.1797 -1.8736 31 1 3.4667 -1.7061 -2.1532 32 1 3.0996 -1.8536 -3.8886 33 1 3.5576 -0.0083 -5.3723 34 1 2.3041 0.8844 -4.4762 35 1 3.9201 2.6603 -3.9338 36 1 3.8669 2.4129 -5.6961 37 1 5.8398 1.7304 -2.6984 38 1 7.0813 0.8551 -3.6268 39 1 5.5639 -0.6947 -2.3784 40 1 5.4719 -0.9363 -4.1399 41 1 0.5543 -4.1089 0.8392 42 1 3.3988 -3.0528 1.2963 43 1 2.8921 -4.7025 0.8194 44 1 2.2870 -5.2808 2.9979 45 1 3.4357 -3.9863 3.4388 46 1 0.5639 -4.0422 3.8466 47 1 1.7122 -2.7469 4.2877 48 1 -0.2660 -2.4337 2.3735 49 1 1.2784 -1.5282 2.3420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333673605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:29 Heat of formation + Delta-G solvation = 89.655326 kcal Electronic energy + Delta-G solvation = -31747.618774 eV Core-core repulsion = 27747.752721 eV Total energy + Delta-G solvation = -3999.866053 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.41738 -39.51532 -38.07007 -36.37247 -35.12783 -33.25985 -32.26523 -31.20986 -29.89630 -29.33580 -28.03706 -27.00743 -26.42422 -24.70240 -24.01874 -22.66612 -21.47007 -20.87751 -20.33473 -19.71200 -19.46235 -17.43065 -16.74893 -16.17807 -15.95892 -15.66505 -15.43265 -15.17650 -15.03142 -14.90053 -14.79490 -14.34397 -14.09798 -13.66770 -13.41341 -12.99440 -12.72909 -12.44947 -12.38209 -12.11452 -12.03926 -11.84722 -11.55195 -11.39418 -11.26048 -11.11833 -11.01161 -10.74649 -10.65236 -10.60833 -10.49594 -10.46777 -10.21826 -9.95034 -9.86034 -9.76551 -9.52175 -9.40861 -9.14859 -8.73055 -8.24088 -6.92071 -6.45293 -4.66776 2.56491 2.97376 3.03787 3.09828 3.18544 3.75723 3.82063 3.94960 4.00948 4.53237 4.65400 4.87016 4.99827 5.02245 5.14009 5.24590 5.25459 5.27725 5.34488 5.43982 5.53209 5.56092 5.62141 5.73228 5.79199 5.83776 5.96244 5.98781 6.02087 6.09118 6.14215 6.19141 6.21418 6.32924 6.41585 6.44210 6.54438 6.58568 6.75088 6.90827 6.95070 7.00093 7.01507 7.06362 7.11991 7.17864 7.20828 7.51050 8.04026 8.57348 8.74107 9.37213 10.02630 10.38239 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.004785 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.287237 B = 5850.177829 C = 6577.296908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.059 3.941 3 Si 0.885 3.115 4 H -0.230 1.230 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.341 4.341 8 H 0.083 0.917 9 N -0.410 5.410 10 C 0.522 3.478 11 N -0.423 5.423 12 N -0.043 5.043 13 N -0.155 5.155 14 N -0.407 5.407 15 C 0.134 3.866 16 C 0.052 3.948 17 N -0.525 5.525 18 C 0.012 3.988 19 C 0.065 3.935 20 O -0.389 6.389 21 C 0.064 3.936 22 C 0.021 3.979 23 C 0.162 3.838 24 C -0.131 4.131 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.114 4.114 28 H 0.275 0.725 29 H 0.067 0.933 30 H 0.143 0.857 31 H 0.091 0.909 32 H 0.029 0.971 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.088 0.912 40 H 0.040 0.960 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.054 0.946 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.056 0.944 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.672 2.796 -0.415 10.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.151 4.151 3 Si 0.707 3.293 4 H -0.153 1.153 5 H -0.210 1.210 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.101 0.899 9 N -0.118 5.118 10 C 0.162 3.838 11 N -0.293 5.293 12 N -0.039 5.039 13 N -0.145 5.145 14 N -0.209 5.209 15 C 0.010 3.990 16 C -0.077 4.077 17 N -0.250 5.250 18 C -0.116 4.116 19 C -0.012 4.012 20 O -0.307 6.307 21 C -0.013 4.013 22 C -0.107 4.107 23 C 0.057 3.943 24 C -0.170 4.170 25 C -0.156 4.156 26 C -0.161 4.161 27 C -0.153 4.153 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.160 0.840 31 H 0.109 0.891 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.789 2.552 -0.834 9.190 hybrid contribution 0.697 1.052 0.042 1.263 sum 9.486 3.604 -0.792 10.179 Atomic orbital electron populations 1.70011 1.06117 1.28518 1.42887 1.25887 0.95434 1.00482 0.93337 0.86664 0.80444 0.80721 0.81428 1.15327 1.21022 1.19530 1.18884 0.91040 0.81059 1.56043 0.89940 1.40978 1.50459 1.18349 1.01991 1.22166 0.90705 0.86494 0.84447 1.74590 1.21854 1.22618 1.10190 1.77477 1.14108 1.12923 0.99387 1.82130 1.13569 1.04959 1.13814 1.50340 1.40466 1.23624 1.06489 1.22043 0.88029 0.83940 1.04971 1.22453 0.94252 0.90128 1.00869 1.62088 1.03237 1.26333 1.33359 1.22876 1.00943 0.96679 0.91138 1.22664 0.80665 0.95662 1.02243 1.87943 1.23742 1.80504 1.38537 1.22660 0.97939 0.93035 0.87626 1.22743 0.88375 0.97598 1.02001 1.22024 0.95140 0.91549 0.85600 1.22664 0.99195 1.00268 0.94909 1.22014 0.98254 0.99150 0.96153 1.22093 0.97469 0.98247 0.98308 1.22523 1.00313 0.99982 0.92459 0.91531 0.91452 0.84013 0.89053 0.95273 0.93925 0.89403 0.92202 0.88624 0.92161 0.88657 0.89350 0.94197 0.89779 0.90854 0.92745 0.92525 0.92499 0.92644 0.92520 0.92473 0.89626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -20.58 13.28 55.49 0.74 -19.84 16 2 C 0.06 1.30 2.95 -17.46 -0.05 1.25 16 3 Si 0.88 17.01 28.49 -169.99 -4.84 12.17 16 4 H -0.23 -4.17 7.11 56.52 0.40 -3.77 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.34 -7.35 4.42 -15.07 -0.07 -7.42 16 8 H 0.08 1.75 7.32 -52.48 -0.38 1.37 16 9 N -0.41 -9.07 2.39 -107.16 -0.26 -9.33 16 10 C 0.52 12.56 7.96 -320.35 -2.55 10.01 16 11 N -0.42 -10.64 11.34 30.10 0.34 -10.30 16 12 N -0.04 -1.07 13.38 60.35 0.81 -0.26 16 13 N -0.16 -3.75 13.93 60.35 0.84 -2.91 16 14 N -0.41 -9.38 3.69 -61.85 -0.23 -9.61 16 15 C 0.13 2.67 5.56 -4.04 -0.02 2.64 16 16 C 0.05 0.90 5.08 -3.82 -0.02 0.88 16 17 N -0.52 -7.89 4.73 -234.31 -1.11 -9.00 16 18 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 19 C 0.06 0.78 7.01 37.21 0.26 1.04 16 20 O -0.39 -5.12 10.83 -35.23 -0.38 -5.50 16 21 C 0.06 0.75 7.01 37.21 0.26 1.01 16 22 C 0.02 0.27 5.64 -3.71 -0.02 0.25 16 23 C 0.16 3.20 3.40 -65.73 -0.22 2.98 16 24 C -0.13 -2.19 6.41 -25.07 -0.16 -2.35 16 25 C -0.12 -1.66 6.80 -25.61 -0.17 -1.83 16 26 C -0.12 -1.83 6.80 -25.61 -0.17 -2.01 16 27 C -0.11 -2.14 6.31 -24.87 -0.16 -2.30 16 28 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 29 H 0.07 1.28 6.52 -51.93 -0.34 0.94 16 30 H 0.14 2.99 2.43 -51.93 -0.13 2.86 16 31 H 0.09 1.68 7.04 -51.93 -0.37 1.31 16 32 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.19 6.39 -51.93 -0.33 0.86 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.08 8.09 -51.93 -0.42 0.66 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 1.77 7.32 -51.93 -0.38 1.39 16 42 H 0.07 1.27 7.20 -51.93 -0.37 0.89 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.09 1.77 6.85 -51.93 -0.36 1.41 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -27.02 377.44 -9.23 -36.25 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -7.71 Total: 8.34 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -3.12 Total: 4.30 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 1.13 Total: -61.25 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.38 Total: -5.50 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -4.84 Total: 12.17 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -27.02 -9.23 -36.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333673605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.901 kcal (2) G-P(sol) polarization free energy of solvation -27.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds