Wall clock time and date at job start Tue Mar 31 2020 19:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31568 * 1 3 3 Si 1.86791 * 119.99959 * 2 1 4 4 H 1.48495 * 109.47410 * 240.00482 * 3 2 1 5 5 H 1.48499 * 109.47427 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47019 * 120.00304 * 3 2 1 7 7 C 1.38799 * 119.99743 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99654 * 185.21005 * 7 2 1 9 9 N 1.36924 * 120.00375 * 5.20720 * 7 2 1 10 10 C 1.38217 * 120.00231 * 70.20266 * 9 7 2 11 11 N 1.31573 * 126.46294 * 186.87248 * 10 9 7 12 12 N 1.28414 * 110.50212 * 179.97438 * 11 10 9 13 13 N 1.28908 * 110.35373 * 0.02562 * 12 11 10 14 14 N 1.35439 * 126.45956 * 6.55735 * 10 9 7 15 15 C 1.46499 * 127.38485 * 0.02562 * 14 10 9 16 16 C 1.53004 * 109.47417 * 83.02071 * 15 14 10 17 17 N 1.46906 * 109.47098 * 180.02562 * 16 15 14 18 18 C 1.47013 * 110.99792 * 293.63683 * 17 16 15 19 19 C 1.53101 * 109.25781 * 177.60624 * 18 17 16 20 20 O 1.43020 * 109.25465 * 56.85053 * 19 18 17 21 21 C 1.43013 * 113.73571 * 301.32947 * 20 19 18 22 22 C 1.47011 * 110.99911 * 170.00285 * 17 16 15 23 23 C 1.46506 * 120.00252 * 250.20296 * 9 7 2 24 24 C 1.54889 * 110.75393 * 295.18261 * 23 9 7 25 25 C 1.54264 * 104.31468 * 156.31968 * 24 23 9 26 26 C 1.53875 * 106.59940 * 336.32405 * 25 24 23 27 27 C 1.54269 * 106.59828 * 359.97438 * 26 25 24 28 28 H 0.97000 * 120.00308 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47294 * 203.02674 * 15 14 10 30 30 H 1.09005 * 109.47117 * 323.02668 * 15 14 10 31 31 H 1.08994 * 109.46975 * 300.00197 * 16 15 14 32 32 H 1.09002 * 109.46813 * 60.00627 * 16 15 14 33 33 H 1.08995 * 109.50744 * 297.54243 * 18 17 16 34 34 H 1.09006 * 109.50921 * 57.67626 * 18 17 16 35 35 H 1.08999 * 109.50816 * 296.91379 * 19 18 17 36 36 H 1.09004 * 109.54341 * 176.80172 * 19 18 17 37 37 H 1.09000 * 109.50660 * 298.73185 * 21 20 19 38 38 H 1.09003 * 109.54035 * 178.62901 * 21 20 19 39 39 H 1.08995 * 109.50364 * 302.32747 * 22 17 16 40 40 H 1.09002 * 109.50747 * 62.41470 * 22 17 16 41 41 H 1.08999 * 110.81775 * 171.84422 * 23 9 7 42 42 H 1.08998 * 110.48767 * 37.57704 * 24 23 9 43 43 H 1.09003 * 110.48904 * 275.06324 * 24 23 9 44 44 H 1.09001 * 110.03224 * 95.60393 * 25 24 23 45 45 H 1.09001 * 110.03615 * 216.98851 * 25 24 23 46 46 H 1.08998 * 110.03671 * 119.27762 * 26 25 24 47 47 H 1.09003 * 110.03537 * 240.71279 * 26 25 24 48 48 H 1.08997 * 110.48823 * 142.28437 * 27 26 25 49 49 H 1.08999 * 110.48779 * 264.80160 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2847 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0096 -1.2021 -0.0005 8 1 3.0864 -1.2040 0.0844 9 7 1.3293 -2.3854 -0.1087 10 6 0.7240 -2.7279 -1.3031 11 7 -0.0619 -3.7621 -1.5131 12 7 -0.4550 -3.7873 -2.7354 13 7 0.0406 -2.7912 -3.3864 14 7 0.8233 -2.0591 -2.4766 15 6 1.5858 -0.8366 -2.7419 16 6 3.0465 -1.1968 -3.0203 17 7 3.8112 0.0291 -3.2857 18 6 3.3702 0.6648 -4.5358 19 6 4.1493 1.9665 -4.7426 20 8 5.5509 1.6819 -4.7450 21 6 6.0146 1.0628 -3.5421 22 6 5.2545 -0.2479 -3.3232 23 6 1.2428 -3.2885 1.0417 24 6 2.6438 -3.8287 1.4219 25 6 2.5118 -4.2180 2.9087 26 6 1.3517 -3.3841 3.4802 27 6 0.8196 -2.5167 2.3207 28 1 -0.4850 0.8400 0.0004 29 1 1.1655 -0.3272 -3.6090 30 1 1.5328 -0.1797 -1.8736 31 1 3.4667 -1.7061 -2.1532 32 1 3.0996 -1.8536 -3.8886 33 1 3.5576 -0.0083 -5.3723 34 1 2.3041 0.8844 -4.4762 35 1 3.9201 2.6603 -3.9338 36 1 3.8669 2.4129 -5.6961 37 1 5.8398 1.7304 -2.6984 38 1 7.0813 0.8551 -3.6268 39 1 5.5639 -0.6947 -2.3784 40 1 5.4719 -0.9363 -4.1399 41 1 0.5543 -4.1089 0.8392 42 1 3.3988 -3.0528 1.2963 43 1 2.8921 -4.7025 0.8194 44 1 2.2870 -5.2808 2.9979 45 1 3.4357 -3.9863 3.4388 46 1 0.5639 -4.0422 3.8466 47 1 1.7122 -2.7469 4.2877 48 1 -0.2660 -2.4337 2.3735 49 1 1.2784 -1.5282 2.3420 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333673605.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:28 Heat of formation + Delta-G solvation = 74.378961 kcal Electronic energy + Delta-G solvation = -31748.281207 eV Core-core repulsion = 27747.752721 eV Total energy + Delta-G solvation = -4000.528486 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.27180 -40.57639 -39.61482 -37.70787 -36.56570 -34.86451 -34.03505 -32.19814 -31.69237 -30.79217 -29.40474 -28.53156 -27.77356 -26.31733 -25.04028 -24.24653 -23.14729 -22.58254 -21.41929 -21.09259 -20.92537 -19.16015 -18.10753 -17.54701 -17.24538 -17.17161 -16.97654 -16.66296 -16.32454 -16.18432 -15.99960 -15.66370 -15.57217 -15.02707 -14.68141 -14.44598 -14.16720 -13.97113 -13.85070 -13.70869 -13.44733 -13.22354 -12.98950 -12.85563 -12.72585 -12.41234 -12.30097 -12.23684 -12.05479 -11.98224 -11.83294 -11.80985 -11.57012 -11.53283 -11.30609 -11.18254 -11.11183 -11.00165 -10.66518 -10.44922 -9.43622 -8.69187 -8.19919 -6.45335 0.69433 1.27139 1.46820 1.52889 1.63731 1.96340 2.28889 2.65096 2.83249 2.93627 3.05395 3.65131 3.81072 3.92283 3.94518 3.96623 3.99458 4.11453 4.17670 4.21780 4.30778 4.32298 4.37678 4.57371 4.58916 4.62876 4.71065 4.73040 4.78044 4.80121 4.85198 4.86063 4.93346 4.96367 4.98981 4.99921 5.10071 5.21373 5.27584 5.29184 5.38883 5.48724 5.54784 5.64207 5.73334 5.88645 5.93060 6.15395 6.28074 6.80132 7.01005 7.58829 8.15563 8.63710 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011790 B = 0.004785 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2374.287237 B = 5850.177829 C = 6577.296908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.035 3.965 3 Si 0.936 3.064 4 H -0.211 1.211 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.333 4.333 8 H 0.091 0.909 9 N -0.409 5.409 10 C 0.505 3.495 11 N -0.442 5.442 12 N -0.055 5.055 13 N -0.162 5.162 14 N -0.407 5.407 15 C 0.129 3.871 16 C 0.071 3.929 17 N -0.532 5.532 18 C 0.010 3.990 19 C 0.067 3.933 20 O -0.400 6.400 21 C 0.065 3.935 22 C 0.020 3.980 23 C 0.149 3.851 24 C -0.122 4.122 25 C -0.109 4.109 26 C -0.115 4.115 27 C -0.107 4.107 28 H 0.270 0.730 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.022 0.978 33 H 0.041 0.959 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.118 0.882 37 H 0.060 0.940 38 H 0.121 0.879 39 H 0.095 0.905 40 H 0.040 0.960 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.032 0.968 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.152 3.418 0.282 12.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.172 4.172 3 Si 0.758 3.242 4 H -0.133 1.133 5 H -0.225 1.225 6 H -0.193 1.193 7 C -0.462 4.462 8 H 0.108 0.892 9 N -0.117 5.117 10 C 0.145 3.855 11 N -0.313 5.313 12 N -0.052 5.052 13 N -0.152 5.152 14 N -0.211 5.211 15 C 0.007 3.993 16 C -0.058 4.058 17 N -0.258 5.258 18 C -0.118 4.118 19 C -0.010 4.010 20 O -0.318 6.318 21 C -0.011 4.011 22 C -0.108 4.108 23 C 0.045 3.955 24 C -0.161 4.161 25 C -0.147 4.147 26 C -0.153 4.153 27 C -0.146 4.146 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.152 0.848 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.139 0.861 39 H 0.113 0.887 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.098 0.902 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.051 0.949 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.308 3.167 -0.128 11.744 hybrid contribution -0.092 0.871 -0.170 0.893 sum 11.216 4.039 -0.298 11.925 Atomic orbital electron populations 1.70133 1.07794 1.28767 1.44899 1.26419 0.95519 1.02840 0.92462 0.85886 0.79241 0.76997 0.82120 1.13333 1.22460 1.19274 1.19063 0.91264 0.80952 1.54907 0.89160 1.41348 1.49736 1.18803 1.01861 1.22461 0.91176 0.86599 0.85296 1.74497 1.22699 1.23657 1.10422 1.77422 1.14670 1.13500 0.99562 1.82016 1.13800 1.05007 1.14351 1.50494 1.40458 1.24088 1.06034 1.22230 0.89466 0.82844 1.04807 1.22128 0.92682 0.90984 1.00017 1.62098 1.04354 1.24943 1.34414 1.22940 1.01092 0.97395 0.90379 1.22737 0.80110 0.94614 1.03498 1.87939 1.24081 1.80555 1.39254 1.22790 0.99119 0.92021 0.87203 1.22847 0.86936 0.98615 1.02415 1.22246 0.97104 0.90982 0.85139 1.22576 0.96569 0.99959 0.96995 1.22000 0.98861 0.99920 0.93939 1.22058 0.98135 0.98099 0.97014 1.22406 0.98699 0.99663 0.93846 0.92080 0.90847 0.84815 0.90203 0.95946 0.94055 0.89775 0.92288 0.86401 0.92175 0.86077 0.88688 0.94201 0.91509 0.91288 0.92564 0.90882 0.90245 0.91408 0.90862 0.94901 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.84 13.28 21.65 0.29 -43.56 16 2 C 0.03 1.51 2.95 84.87 0.25 1.77 16 3 Si 0.94 34.31 28.49 68.60 1.95 36.26 16 4 H -0.21 -7.03 7.11 99.48 0.71 -6.32 16 5 H -0.30 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -9.71 7.11 99.48 0.71 -9.00 16 7 C -0.33 -14.26 4.42 84.03 0.37 -13.89 16 8 H 0.09 3.73 7.32 -2.91 -0.02 3.70 16 9 N -0.41 -18.32 2.39 -492.94 -1.18 -19.50 16 10 C 0.50 24.76 7.96 260.63 2.08 26.83 16 11 N -0.44 -22.82 11.34 -58.67 -0.67 -23.49 16 12 N -0.06 -2.83 13.38 37.02 0.50 -2.34 16 13 N -0.16 -7.96 13.93 37.02 0.52 -7.44 16 14 N -0.41 -19.06 3.69 -349.58 -1.29 -20.35 16 15 C 0.13 5.14 5.56 86.38 0.48 5.62 16 16 C 0.07 2.41 5.08 86.30 0.44 2.85 16 17 N -0.53 -15.14 4.73 -895.21 -4.23 -19.37 16 18 C 0.01 0.26 5.44 86.32 0.47 0.72 16 19 C 0.07 1.46 7.01 72.02 0.50 1.97 16 20 O -0.40 -9.44 10.83 -148.98 -1.61 -11.05 16 21 C 0.07 1.33 7.01 72.01 0.50 1.84 16 22 C 0.02 0.46 5.64 86.31 0.49 0.95 16 23 C 0.15 5.93 3.40 46.41 0.16 6.09 16 24 C -0.12 -3.89 6.41 31.67 0.20 -3.69 16 25 C -0.11 -2.75 6.80 31.32 0.21 -2.53 16 26 C -0.12 -3.17 6.80 31.32 0.21 -2.95 16 27 C -0.11 -4.01 6.31 31.80 0.20 -3.81 16 28 H 0.27 13.16 8.31 -92.71 -0.77 12.38 16 29 H 0.07 2.79 6.52 -2.39 -0.02 2.77 16 30 H 0.13 5.61 2.43 -2.38 -0.01 5.60 16 31 H 0.08 2.88 7.04 -2.39 -0.02 2.86 16 32 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.08 2.18 6.39 -2.38 -0.02 2.17 16 35 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.12 2.01 8.14 -2.38 -0.02 2.00 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.09 2.09 8.09 -2.39 -0.02 2.07 16 40 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 2.87 7.32 -2.39 -0.02 2.86 16 42 H 0.07 2.26 7.20 -2.39 -0.02 2.24 16 43 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 48 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.07 2.70 6.85 -2.39 -0.02 2.69 16 Total: -1.00 -58.85 377.44 1.79 -57.06 By element: Atomic # 1 Polarization: 31.05 SS G_CDS: 0.95 Total: 32.01 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 6.57 Total: 21.77 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -6.07 Total: -136.05 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -1.61 Total: -11.05 kcal Atomic # 14 Polarization: 34.31 SS G_CDS: 1.95 Total: 36.26 kcal Total: -58.85 1.79 -57.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333673605.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.438 kcal (2) G-P(sol) polarization free energy of solvation -58.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds