Wall clock time and date at job start Tue Mar 31 2020 19:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00301 * 2 1 4 4 N 1.46499 * 109.47203 * 125.56151 * 3 2 1 5 5 C 1.36736 * 127.13925 * 273.65318 * 4 3 2 6 6 C 1.50703 * 126.34777 * 359.93925 * 5 4 3 7 7 H 1.09005 * 109.47046 * 345.00693 * 6 5 4 8 8 O 1.42901 * 109.47606 * 225.00419 * 6 5 4 9 9 C 1.53007 * 109.47170 * 105.00096 * 6 5 4 10 10 C 1.52995 * 117.49690 * 248.62596 * 9 6 5 11 11 C 1.52991 * 117.49749 * 179.97438 * 9 6 5 12 12 N 1.30295 * 107.30865 * 179.97438 * 5 4 3 13 13 N 1.28525 * 110.05368 * 359.97438 * 12 5 4 14 14 C 1.31219 * 109.86001 * 0.02562 * 13 12 5 15 15 N 1.38577 * 126.47746 * 179.97438 * 14 13 12 16 16 C 1.46899 * 111.00538 * 106.76729 * 15 14 13 17 17 C 1.50695 * 109.47047 * 301.20183 * 16 15 14 18 18 H 1.08003 * 120.00379 * 4.71150 * 17 16 15 19 19 C 1.37882 * 120.00116 * 184.71826 * 17 16 15 20 20 N 1.31515 * 119.99668 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00257 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47308 * 59.99581 * 21 19 17 23 23 H 1.48500 * 109.47259 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47098 * 299.99912 * 21 19 17 25 25 C 1.46907 * 110.99712 * 342.81266 * 15 14 13 26 26 C 1.53000 * 109.47224 * 195.89758 * 25 15 14 27 27 O 1.42901 * 109.46936 * 63.03186 * 26 25 15 28 28 C 1.42898 * 113.99858 * 180.02562 * 27 26 25 29 29 H 1.07993 * 120.00342 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99615 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99917 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.46979 * 5.56637 * 3 2 1 33 33 H 1.08999 * 109.47077 * 245.56337 * 3 2 1 34 34 H 0.96700 * 113.99551 * 300.00395 * 8 6 5 35 35 H 1.09002 * 115.54629 * 34.33554 * 9 6 5 36 36 H 1.08994 * 117.50578 * 359.97438 * 10 9 6 37 37 H 1.09000 * 117.49496 * 145.02526 * 10 9 6 38 38 H 1.09004 * 117.50120 * 214.97768 * 11 9 6 39 39 H 1.09002 * 117.50442 * 0.02562 * 11 9 6 40 40 H 1.08997 * 109.47014 * 61.19897 * 16 15 14 41 41 H 1.09000 * 109.47269 * 181.19981 * 16 15 14 42 42 H 0.97003 * 120.00071 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.47343 * 315.90197 * 25 15 14 44 44 H 1.09002 * 109.46668 * 75.89981 * 25 15 14 45 45 H 1.09000 * 109.46997 * 183.02857 * 26 25 15 46 46 H 1.09000 * 109.47078 * 303.02757 * 26 25 15 47 47 H 1.09010 * 109.47018 * 299.99964 * 28 27 26 48 48 H 1.09000 * 109.47215 * 59.99895 * 28 27 26 49 49 H 1.08994 * 109.47125 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0034 1.3263 1.1236 5 6 2.7456 1.7174 2.4082 6 6 1.4274 2.2148 2.9430 7 1 0.7718 2.4726 2.1111 8 8 1.6476 3.3719 3.7522 9 6 0.7732 1.1191 3.7871 10 6 -0.4977 0.4681 3.2376 11 6 -0.5825 1.4322 4.4233 12 7 3.8511 1.5809 3.0842 13 7 4.7825 1.1332 2.3201 14 6 4.3175 0.9591 1.1055 15 7 5.0269 0.4909 0.0110 16 6 4.6329 -0.8843 -0.3229 17 6 4.8813 -1.7800 0.8632 18 1 5.2188 -1.3572 1.7980 19 6 4.6778 -3.1394 0.7551 20 7 4.2665 -3.6543 -0.3830 21 14 4.9864 -4.2498 2.2252 22 1 4.1027 -3.8429 3.3471 23 1 4.6955 -5.6574 1.8520 24 1 6.4058 -4.1318 2.6453 25 6 6.4746 0.5819 0.2439 26 6 7.2151 0.4423 -1.0876 27 8 6.8614 1.5289 -1.9456 28 6 7.5015 1.4933 -3.2227 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3595 2.1311 0.0997 33 1 2.6134 1.4071 -0.9356 34 1 2.2236 3.2158 4.5131 35 1 1.4595 0.4872 4.3508 36 1 -0.8680 0.8206 2.2750 37 1 -0.6476 -0.5924 3.4397 38 1 -0.7883 1.0055 5.4050 39 1 -1.0086 2.4186 4.2403 40 1 3.5738 -0.9066 -0.5795 41 1 5.2199 -1.2345 -1.1719 42 1 4.1230 -4.6106 -0.4590 43 1 6.7106 1.5474 0.6915 44 1 6.7850 -0.2166 0.9178 45 1 8.2902 0.4559 -0.9086 46 1 6.9374 -0.4996 -1.5608 47 1 8.5827 1.5283 -3.0883 48 1 7.2293 0.5733 -3.7400 49 1 7.1812 2.3512 -3.8138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338663261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:10 Heat of formation + Delta-G solvation = 46.498306 kcal Electronic energy + Delta-G solvation = -31199.949883 eV Core-core repulsion = 27165.919650 eV Total energy + Delta-G solvation = -4034.030233 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.36334 -38.42011 -37.85666 -36.40405 -35.74338 -35.40417 -32.69314 -32.34642 -30.34515 -29.05717 -27.32665 -26.33606 -26.06685 -25.64741 -23.17780 -22.41064 -22.00410 -21.27630 -20.72386 -19.83572 -19.27758 -17.40900 -16.75339 -16.60555 -16.15278 -15.98792 -15.66681 -15.57325 -14.98460 -14.81265 -14.46676 -14.38913 -14.30296 -13.95507 -13.69332 -13.17354 -13.02713 -12.83170 -12.32767 -12.20863 -11.72797 -11.67350 -11.51795 -11.35758 -11.27336 -11.10389 -11.03163 -11.01091 -10.60467 -10.55379 -10.47056 -10.31229 -10.27096 -10.14698 -9.96426 -9.67329 -9.54622 -9.33003 -9.23536 -8.76834 -8.58052 -7.43240 -6.20813 -4.28279 2.13263 2.42495 3.02350 3.23366 3.26838 3.33328 3.48759 3.73467 4.21526 4.31418 4.41181 4.48185 4.57434 4.73897 4.87127 4.90923 4.97136 5.06923 5.13000 5.24431 5.42682 5.44754 5.47999 5.56266 5.59491 5.62996 5.70108 5.76077 5.85068 5.86525 5.90934 5.94380 6.01930 6.09670 6.12948 6.24173 6.40607 6.57411 6.65984 6.75005 6.80753 6.96405 7.23817 7.26215 7.47564 7.59736 7.66730 7.75625 7.97851 8.13726 8.81504 9.39315 9.43597 10.85079 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008980 B = 0.005071 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.233627 B = 5520.252457 C = 6909.176169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.163 4.163 3 C 0.141 3.859 4 N -0.463 5.463 5 C 0.122 3.878 6 C 0.243 3.757 7 H 0.105 0.895 8 O -0.546 6.546 9 C -0.184 4.184 10 C -0.168 4.168 11 C -0.165 4.165 12 N -0.281 5.281 13 N -0.334 5.334 14 C 0.419 3.581 15 N -0.459 5.459 16 C 0.186 3.814 17 C -0.555 4.555 18 H 0.069 0.931 19 C 0.072 3.928 20 N -0.890 5.890 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.080 3.920 26 C 0.067 3.933 27 O -0.380 6.380 28 C 0.032 3.968 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.134 0.866 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.387 0.613 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.038 0.962 41 H 0.050 0.950 42 H 0.264 0.736 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.033 0.967 48 H 0.038 0.962 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.320 9.161 -0.674 11.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.182 4.182 3 C 0.018 3.982 4 N -0.158 5.158 5 C -0.146 4.146 6 C 0.181 3.819 7 H 0.122 0.878 8 O -0.350 6.350 9 C -0.203 4.203 10 C -0.205 4.205 11 C -0.202 4.202 12 N -0.121 5.121 13 N -0.179 5.179 14 C 0.063 3.937 15 N -0.182 5.182 16 C 0.063 3.937 17 C -0.593 4.593 18 H 0.087 0.913 19 C -0.132 4.132 20 N -0.528 5.528 21 Si 0.718 3.282 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.199 1.199 25 C -0.047 4.047 26 C -0.009 4.009 27 O -0.298 6.298 28 C -0.065 4.065 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.152 0.848 32 H 0.105 0.895 33 H 0.128 0.872 34 H 0.236 0.764 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.116 0.884 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.005 9.742 -0.431 11.452 hybrid contribution 0.077 -2.052 0.337 2.081 sum -5.928 7.690 -0.094 9.710 Atomic orbital electron populations 1.23770 0.95449 1.01727 1.00829 1.23460 0.96297 0.99125 0.99295 1.20873 0.91455 0.96584 0.89252 1.45903 1.09899 1.50244 1.09802 1.24993 0.99555 1.07692 0.82331 1.19289 0.86884 0.84076 0.91685 0.87783 1.86508 1.71953 1.33538 1.43046 1.22928 0.91539 1.01701 1.04138 1.23003 1.00238 0.98958 0.98300 1.22883 0.98962 1.00745 0.97598 1.73676 0.96571 1.15838 1.26042 1.74607 1.23264 1.21994 0.98003 1.22542 0.82174 0.97344 0.91645 1.59246 1.05344 1.26012 1.27644 1.20124 0.97563 0.78864 0.97174 1.21781 1.46754 0.92556 0.98244 0.91303 1.24875 0.94536 0.97972 0.95806 1.69920 1.45518 1.12864 1.24491 0.86666 0.79208 0.79327 0.83026 1.20253 1.21202 1.19927 1.21918 0.85003 1.02831 0.94981 1.22655 0.97067 0.90100 0.91123 1.87970 1.68897 1.47644 1.25320 1.22656 0.96242 1.01476 0.86112 0.87876 0.88896 0.84831 0.89470 0.87247 0.76383 0.86982 0.88436 0.88603 0.88730 0.88389 0.94403 0.93181 0.92603 0.90854 0.89997 0.93264 0.92163 0.94837 0.94312 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.17 12.84 29.01 0.37 -1.79 16 2 C -0.16 -2.50 9.23 -36.02 -0.33 -2.83 16 3 C 0.14 2.13 5.95 -5.19 -0.03 2.10 16 4 N -0.46 -8.64 2.79 -115.37 -0.32 -8.96 16 5 C 0.12 2.22 6.91 -154.02 -1.06 1.16 16 6 C 0.24 3.42 3.58 -27.88 -0.10 3.32 16 7 H 0.10 1.32 6.80 -51.93 -0.35 0.97 16 8 O -0.55 -7.52 13.24 -35.23 -0.47 -7.98 16 9 C -0.18 -2.41 5.35 -90.62 -0.48 -2.90 16 10 C -0.17 -1.91 10.03 -26.71 -0.27 -2.17 16 11 C -0.16 -1.72 10.16 -26.71 -0.27 -1.99 16 12 N -0.28 -5.90 12.10 32.99 0.40 -5.50 16 13 N -0.33 -7.66 10.90 30.31 0.33 -7.33 16 14 C 0.42 9.04 5.73 -318.87 -1.83 7.21 16 15 N -0.46 -9.73 4.62 -175.88 -0.81 -10.54 16 16 C 0.19 4.40 4.97 -4.98 -0.02 4.37 16 17 C -0.55 -14.55 7.52 -34.44 -0.26 -14.81 16 18 H 0.07 1.92 6.43 -52.48 -0.34 1.58 16 19 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 20 N -0.89 -24.35 13.29 55.43 0.74 -23.62 16 21 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 C 0.08 1.60 4.71 -3.82 -0.02 1.58 16 26 C 0.07 1.17 6.07 37.16 0.23 1.39 16 27 O -0.38 -6.53 10.62 -35.23 -0.37 -6.91 16 28 C 0.03 0.42 11.01 101.05 1.11 1.53 16 29 H 0.10 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.09 0.89 7.72 -52.49 -0.41 0.48 16 31 H 0.13 2.62 6.31 -52.49 -0.33 2.29 16 32 H 0.09 1.04 6.90 -51.93 -0.36 0.69 16 33 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 34 H 0.39 4.72 8.97 45.56 0.41 5.13 16 35 H 0.11 1.71 8.11 -51.93 -0.42 1.29 16 36 H 0.10 1.00 6.53 -51.93 -0.34 0.66 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.04 0.92 5.12 -51.93 -0.27 0.65 16 41 H 0.05 1.25 6.48 -51.93 -0.34 0.92 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.07 1.45 7.80 -51.93 -0.40 1.05 16 44 H 0.08 1.77 6.65 -51.93 -0.35 1.42 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 1.11 6.57 -51.93 -0.34 0.77 16 47 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 48 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 399.79 15.07 6.02 6.02 Total: -1.00 -30.98 399.79 -9.34 -40.32 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -6.77 Total: 10.14 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.07 Total: -2.01 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: 0.33 Total: -55.95 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.84 Total: -14.89 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.98 -9.34 -40.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338663261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.823 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds