Wall clock time and date at job start Tue Mar 31 2020 19:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 120.00301 * 2 1 4 4 N 1.46499 * 109.47203 * 125.56151 * 3 2 1 5 5 C 1.36736 * 127.13925 * 273.65318 * 4 3 2 6 6 C 1.50703 * 126.34777 * 359.93925 * 5 4 3 7 7 H 1.09005 * 109.47046 * 345.00693 * 6 5 4 8 8 O 1.42901 * 109.47606 * 225.00419 * 6 5 4 9 9 C 1.53007 * 109.47170 * 105.00096 * 6 5 4 10 10 C 1.52995 * 117.49690 * 248.62596 * 9 6 5 11 11 C 1.52991 * 117.49749 * 179.97438 * 9 6 5 12 12 N 1.30295 * 107.30865 * 179.97438 * 5 4 3 13 13 N 1.28525 * 110.05368 * 359.97438 * 12 5 4 14 14 C 1.31219 * 109.86001 * 0.02562 * 13 12 5 15 15 N 1.38577 * 126.47746 * 179.97438 * 14 13 12 16 16 C 1.46899 * 111.00538 * 106.76729 * 15 14 13 17 17 C 1.50695 * 109.47047 * 301.20183 * 16 15 14 18 18 H 1.08003 * 120.00379 * 4.71150 * 17 16 15 19 19 C 1.37882 * 120.00116 * 184.71826 * 17 16 15 20 20 N 1.31515 * 119.99668 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00257 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47308 * 59.99581 * 21 19 17 23 23 H 1.48500 * 109.47259 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47098 * 299.99912 * 21 19 17 25 25 C 1.46907 * 110.99712 * 342.81266 * 15 14 13 26 26 C 1.53000 * 109.47224 * 195.89758 * 25 15 14 27 27 O 1.42901 * 109.46936 * 63.03186 * 26 25 15 28 28 C 1.42898 * 113.99858 * 180.02562 * 27 26 25 29 29 H 1.07993 * 120.00342 * 180.02562 * 1 2 3 30 30 H 1.07997 * 119.99615 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99917 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.46979 * 5.56637 * 3 2 1 33 33 H 1.08999 * 109.47077 * 245.56337 * 3 2 1 34 34 H 0.96700 * 113.99551 * 300.00395 * 8 6 5 35 35 H 1.09002 * 115.54629 * 34.33554 * 9 6 5 36 36 H 1.08994 * 117.50578 * 359.97438 * 10 9 6 37 37 H 1.09000 * 117.49496 * 145.02526 * 10 9 6 38 38 H 1.09004 * 117.50120 * 214.97768 * 11 9 6 39 39 H 1.09002 * 117.50442 * 0.02562 * 11 9 6 40 40 H 1.08997 * 109.47014 * 61.19897 * 16 15 14 41 41 H 1.09000 * 109.47269 * 181.19981 * 16 15 14 42 42 H 0.97003 * 120.00071 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.47343 * 315.90197 * 25 15 14 44 44 H 1.09002 * 109.46668 * 75.89981 * 25 15 14 45 45 H 1.09000 * 109.46997 * 183.02857 * 26 25 15 46 46 H 1.09000 * 109.47078 * 303.02757 * 26 25 15 47 47 H 1.09010 * 109.47018 * 299.99964 * 28 27 26 48 48 H 1.09000 * 109.47215 * 59.99895 * 28 27 26 49 49 H 1.08994 * 109.47125 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 3.0034 1.3263 1.1236 5 6 2.7456 1.7174 2.4082 6 6 1.4274 2.2148 2.9430 7 1 0.7718 2.4726 2.1111 8 8 1.6476 3.3719 3.7522 9 6 0.7732 1.1191 3.7871 10 6 -0.4977 0.4681 3.2376 11 6 -0.5825 1.4322 4.4233 12 7 3.8511 1.5809 3.0842 13 7 4.7825 1.1332 2.3201 14 6 4.3175 0.9591 1.1055 15 7 5.0269 0.4909 0.0110 16 6 4.6329 -0.8843 -0.3229 17 6 4.8813 -1.7800 0.8632 18 1 5.2188 -1.3572 1.7980 19 6 4.6778 -3.1394 0.7551 20 7 4.2665 -3.6543 -0.3830 21 14 4.9864 -4.2498 2.2252 22 1 4.1027 -3.8429 3.3471 23 1 4.6955 -5.6574 1.8520 24 1 6.4058 -4.1318 2.6453 25 6 6.4746 0.5819 0.2439 26 6 7.2151 0.4423 -1.0876 27 8 6.8614 1.5289 -1.9456 28 6 7.5015 1.4933 -3.2227 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3595 2.1311 0.0997 33 1 2.6134 1.4071 -0.9356 34 1 2.2236 3.2158 4.5131 35 1 1.4595 0.4872 4.3508 36 1 -0.8680 0.8206 2.2750 37 1 -0.6476 -0.5924 3.4397 38 1 -0.7883 1.0055 5.4050 39 1 -1.0086 2.4186 4.2403 40 1 3.5738 -0.9066 -0.5795 41 1 5.2199 -1.2345 -1.1719 42 1 4.1230 -4.6106 -0.4590 43 1 6.7106 1.5474 0.6915 44 1 6.7850 -0.2166 0.9178 45 1 8.2902 0.4559 -0.9086 46 1 6.9374 -0.4996 -1.5608 47 1 8.5827 1.5283 -3.0883 48 1 7.2293 0.5733 -3.7400 49 1 7.1812 2.3512 -3.8138 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338663261.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:09 Heat of formation + Delta-G solvation = 26.028648 kcal Electronic energy + Delta-G solvation = -31200.837514 eV Core-core repulsion = 27165.919650 eV Total energy + Delta-G solvation = -4034.917864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.89172 -39.64245 -39.17140 -37.88128 -37.04189 -36.42240 -34.72579 -33.65526 -31.77106 -30.63870 -28.91696 -27.64070 -27.41641 -26.98470 -24.96813 -23.61222 -23.18360 -22.49564 -22.04547 -21.16714 -20.65023 -18.95386 -18.48651 -17.77159 -17.54476 -17.43212 -17.05888 -16.97510 -16.61081 -16.11656 -15.85090 -15.67107 -15.51774 -15.20927 -15.00982 -14.67644 -14.38434 -14.13835 -13.82016 -13.49008 -13.28063 -13.18689 -12.86613 -12.76650 -12.64659 -12.54428 -12.45068 -12.36915 -12.23379 -12.16674 -11.97066 -11.77708 -11.62854 -11.37540 -11.23729 -11.12678 -10.99536 -10.69199 -10.55321 -10.45957 -10.35469 -9.14214 -8.27345 -6.40454 0.80754 1.08736 1.27612 1.28903 1.37454 1.69436 1.90975 2.29761 2.76290 2.92807 3.02284 3.02997 3.26155 3.43365 3.64489 3.74832 3.85978 3.89380 4.06024 4.10333 4.17343 4.19450 4.29092 4.33327 4.42741 4.50233 4.55221 4.59990 4.62601 4.72970 4.81463 4.86266 4.92284 4.96148 5.01089 5.03957 5.08822 5.16015 5.21225 5.23951 5.29703 5.57205 5.65070 5.70876 5.74429 5.87553 6.00061 6.34449 6.46750 6.54763 6.73357 7.28836 7.85439 8.76638 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008980 B = 0.005071 C = 0.004052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.233627 B = 5520.252457 C = 6909.176169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.197 4.197 3 C 0.140 3.860 4 N -0.462 5.462 5 C 0.140 3.860 6 C 0.250 3.750 7 H 0.130 0.870 8 O -0.546 6.546 9 C -0.207 4.207 10 C -0.165 4.165 11 C -0.139 4.139 12 N -0.315 5.315 13 N -0.366 5.366 14 C 0.395 3.605 15 N -0.451 5.451 16 C 0.206 3.794 17 C -0.556 4.556 18 H 0.048 0.952 19 C 0.034 3.966 20 N -0.910 5.910 21 Si 0.938 3.062 22 H -0.287 1.287 23 H -0.273 1.273 24 H -0.272 1.272 25 C 0.083 3.917 26 C 0.079 3.921 27 O -0.402 6.402 28 C 0.026 3.974 29 H 0.109 0.891 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.100 0.900 34 H 0.392 0.608 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.267 0.733 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.044 0.956 47 H 0.052 0.948 48 H 0.038 0.962 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.656 10.463 -0.967 13.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.216 4.216 3 C 0.019 3.981 4 N -0.157 5.157 5 C -0.130 4.130 6 C 0.187 3.813 7 H 0.148 0.852 8 O -0.351 6.351 9 C -0.226 4.226 10 C -0.202 4.202 11 C -0.176 4.176 12 N -0.155 5.155 13 N -0.211 5.211 14 C 0.037 3.963 15 N -0.174 5.174 16 C 0.081 3.919 17 C -0.595 4.595 18 H 0.066 0.934 19 C -0.168 4.168 20 N -0.549 5.549 21 Si 0.765 3.235 22 H -0.213 1.213 23 H -0.198 1.198 24 H -0.198 1.198 25 C -0.045 4.045 26 C 0.002 3.998 27 O -0.321 6.321 28 C -0.070 4.070 29 H 0.127 0.873 30 H 0.152 0.848 31 H 0.099 0.901 32 H 0.147 0.853 33 H 0.118 0.882 34 H 0.242 0.758 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.132 0.868 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.062 0.938 47 H 0.071 0.929 48 H 0.057 0.943 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.339 11.049 -0.729 13.862 hybrid contribution 0.703 -2.406 0.451 2.546 sum -7.637 8.643 -0.278 11.537 Atomic orbital electron populations 1.24080 0.93999 1.03876 0.95537 1.23017 0.97292 0.97078 1.04262 1.21140 0.91363 0.97951 0.87690 1.46202 1.09369 1.49234 1.10859 1.25945 1.00277 1.04949 0.81804 1.19538 0.84861 0.84377 0.92482 0.85229 1.86491 1.71954 1.33433 1.43245 1.22737 0.92254 1.02091 1.05555 1.23115 0.98362 0.99061 0.99662 1.22972 0.95607 1.01241 0.97741 1.73586 0.97536 1.17804 1.26611 1.74484 1.24860 1.22833 0.98902 1.22646 0.83654 0.98514 0.91438 1.59249 1.05942 1.24327 1.27929 1.19758 0.96716 0.79922 0.95518 1.21838 1.46270 0.93163 0.98217 0.93379 1.25427 0.94602 0.99002 0.97733 1.69981 1.46205 1.13167 1.25557 0.85916 0.78785 0.78523 0.80286 1.21279 1.19803 1.19752 1.21875 0.84668 1.01634 0.96280 1.22470 0.98012 0.89558 0.89800 1.87918 1.69994 1.47216 1.26972 1.22890 0.97294 1.02433 0.84361 0.87312 0.84847 0.90066 0.85277 0.88209 0.75764 0.90045 0.86656 0.89148 0.87830 0.86751 0.95058 0.94811 0.92379 0.91066 0.92457 0.90560 0.93777 0.92893 0.94284 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 12.84 67.78 0.87 -1.99 16 2 C -0.20 -5.91 9.23 25.65 0.24 -5.68 16 3 C 0.14 4.06 5.95 85.63 0.51 4.57 16 4 N -0.46 -17.34 2.79 -518.91 -1.45 -18.78 16 5 C 0.14 5.05 6.91 137.64 0.95 6.00 16 6 C 0.25 6.50 3.58 29.85 0.11 6.61 16 7 H 0.13 2.72 6.80 -2.38 -0.02 2.71 16 8 O -0.55 -13.87 13.24 -148.98 -1.97 -15.85 16 9 C -0.21 -5.08 5.35 -10.80 -0.06 -5.14 16 10 C -0.17 -3.24 10.03 30.61 0.31 -2.93 16 11 C -0.14 -2.43 10.16 30.61 0.31 -2.12 16 12 N -0.32 -13.67 12.10 -49.54 -0.60 -14.27 16 13 N -0.37 -17.57 10.90 -58.00 -0.63 -18.20 16 14 C 0.40 17.71 5.73 260.11 1.49 19.20 16 15 N -0.45 -20.03 4.62 -710.35 -3.28 -23.31 16 16 C 0.21 10.20 4.97 85.56 0.42 10.63 16 17 C -0.56 -30.53 7.52 25.60 0.19 -30.34 16 18 H 0.05 2.83 6.43 -2.91 -0.02 2.81 16 19 C 0.03 1.85 5.46 84.66 0.46 2.31 16 20 N -0.91 -50.98 13.29 21.45 0.28 -50.69 16 21 Si 0.94 44.86 29.54 68.60 2.03 46.89 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 24 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 25 C 0.08 3.47 4.71 86.30 0.41 3.87 16 26 C 0.08 2.78 6.07 71.98 0.44 3.21 16 27 O -0.40 -13.77 10.62 -148.98 -1.58 -15.35 16 28 C 0.03 0.65 11.01 113.37 1.25 1.90 16 29 H 0.11 2.18 8.06 -2.91 -0.02 2.16 16 30 H 0.13 1.75 7.72 -2.91 -0.02 1.72 16 31 H 0.08 3.35 6.31 -2.91 -0.02 3.33 16 32 H 0.13 2.60 6.90 -2.39 -0.02 2.58 16 33 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 34 H 0.39 9.18 8.97 -74.06 -0.66 8.52 16 35 H 0.08 2.52 8.11 -2.39 -0.02 2.50 16 36 H 0.12 1.82 6.53 -2.39 -0.02 1.80 16 37 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.03 1.61 5.12 -2.39 -0.01 1.60 16 41 H 0.03 1.78 6.48 -2.39 -0.02 1.76 16 42 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 43 H 0.07 2.96 7.80 -2.39 -0.02 2.94 16 44 H 0.06 2.64 6.65 -2.39 -0.02 2.63 16 45 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.04 1.69 6.57 -2.39 -0.02 1.68 16 47 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 48 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -71.00 399.79 1.00 -70.00 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.30 Total: 29.45 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: 7.90 Total: 10.11 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -5.67 Total: -125.25 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -3.55 Total: -31.20 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -71.00 1.00 -70.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338663261.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.032 kcal (2) G-P(sol) polarization free energy of solvation -71.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds