Wall clock time and date at job start Tue Mar 31 2020 19:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50706 * 120.00339 * 2 1 4 4 N 1.46499 * 109.46907 * 124.99832 * 3 2 1 5 5 C 1.36739 * 127.13455 * 264.26724 * 4 3 2 6 6 C 1.50695 * 126.34718 * 359.96902 * 5 4 3 7 7 H 1.08993 * 109.47478 * 15.28880 * 6 5 4 8 8 O 1.42906 * 109.46917 * 135.28978 * 6 5 4 9 9 C 1.53006 * 109.47179 * 255.28342 * 6 5 4 10 10 C 1.52995 * 117.49950 * 248.62665 * 9 6 5 11 11 C 1.52995 * 117.49688 * 180.02562 * 9 6 5 12 12 N 1.30296 * 107.30106 * 180.23328 * 5 4 3 13 13 N 1.28529 * 110.05594 * 359.77400 * 12 5 4 14 14 C 1.31213 * 109.85976 * 0.02562 * 13 12 5 15 15 N 1.38580 * 126.47130 * 179.97438 * 14 13 12 16 16 C 1.46896 * 111.00526 * 291.35732 * 15 14 13 17 17 C 1.50700 * 109.47064 * 67.36730 * 16 15 14 18 18 H 1.08009 * 119.99838 * 0.62807 * 17 16 15 19 19 C 1.37877 * 120.00173 * 180.62490 * 17 16 15 20 20 N 1.31512 * 120.00154 * 5.37362 * 19 17 16 21 21 Si 1.86804 * 119.99880 * 185.37239 * 19 17 16 22 22 H 1.48492 * 109.47260 * 94.97774 * 21 19 17 23 23 H 1.48504 * 109.47040 * 214.98013 * 21 19 17 24 24 H 1.48497 * 109.47199 * 334.97223 * 21 19 17 25 25 C 1.46898 * 111.00221 * 55.31655 * 15 14 13 26 26 C 1.52997 * 109.47414 * 162.93387 * 25 15 14 27 27 O 1.42900 * 109.47335 * 68.41038 * 26 25 15 28 28 C 1.42902 * 113.99802 * 184.33328 * 27 26 25 29 29 H 1.07999 * 120.00247 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.00164 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.00164 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46760 * 4.99426 * 3 2 1 33 33 H 1.08996 * 109.46717 * 244.99811 * 3 2 1 34 34 H 0.96704 * 114.00005 * 59.99289 * 8 6 5 35 35 H 1.09004 * 115.54541 * 34.33283 * 9 6 5 36 36 H 1.09006 * 117.50198 * 359.97438 * 10 9 6 37 37 H 1.08999 * 117.50106 * 145.02704 * 10 9 6 38 38 H 1.08997 * 117.50109 * 214.98144 * 11 9 6 39 39 H 1.08998 * 117.50404 * 359.97438 * 11 9 6 40 40 H 1.08994 * 109.47687 * 187.36982 * 16 15 14 41 41 H 1.09009 * 109.47178 * 307.37694 * 16 15 14 42 42 H 0.96994 * 119.99963 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.47312 * 42.92636 * 25 15 14 44 44 H 1.09003 * 109.46791 * 282.92952 * 25 15 14 45 45 H 1.08996 * 109.47054 * 188.41175 * 26 25 15 46 46 H 1.08998 * 109.47214 * 308.40692 * 26 25 15 47 47 H 1.08999 * 109.46707 * 184.79559 * 28 27 26 48 48 H 1.08997 * 109.46639 * 304.78932 * 28 27 26 49 49 H 1.08992 * 109.47399 * 64.79425 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.7817 1.8905 2.3614 6 6 1.5343 2.6037 2.8153 7 1 0.7187 2.3833 2.1267 8 8 1.1828 2.1601 4.1275 9 6 1.7890 4.1122 2.8383 10 6 1.8319 4.8008 4.2038 11 6 0.6353 5.0168 3.2759 12 7 3.8604 1.6968 3.0661 13 7 4.7309 1.0545 2.3720 14 6 4.2506 0.8025 1.1773 15 7 4.8990 0.1299 0.1538 16 6 6.0220 0.9207 -0.3672 17 6 7.0928 1.0283 0.6877 18 1 6.9574 0.5479 1.6456 19 6 8.2453 1.7400 0.4302 20 7 8.3657 2.4122 -0.6936 21 14 9.6356 1.7493 1.6778 22 1 10.6257 0.7009 1.3234 23 1 10.2980 3.0784 1.6709 24 1 9.0883 1.4762 3.0310 25 6 5.3499 -1.1958 0.5977 26 6 5.6664 -2.0621 -0.6230 27 8 6.8240 -1.5481 -1.2847 28 6 7.1501 -2.2288 -2.4981 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 1.8641 2.3243 4.7939 35 1 2.4575 4.4879 2.0636 36 1 1.6782 4.1792 5.0860 37 1 2.5287 5.6297 4.3279 38 1 0.5447 5.9879 2.7892 39 1 -0.3052 4.5375 3.5470 40 1 6.4311 0.4322 -1.2515 41 1 5.6718 1.9183 -0.6324 42 1 9.1767 2.9126 -0.8749 43 1 4.5632 -1.6692 1.1852 44 1 6.2457 -1.0889 1.2094 45 1 5.8560 -3.0864 -0.3023 46 1 4.8192 -2.0471 -1.3087 47 1 8.0865 -1.8362 -2.8945 48 1 7.2586 -3.2949 -2.2987 49 1 6.3541 -2.0745 -3.2265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338663263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:15 Heat of formation + Delta-G solvation = 57.711884 kcal Electronic energy + Delta-G solvation = -30870.543762 eV Core-core repulsion = 26836.999786 eV Total energy + Delta-G solvation = -4033.543975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.42026 -38.72923 -37.85039 -36.07956 -35.95186 -35.09592 -32.57414 -32.31036 -30.45261 -29.07401 -27.15384 -26.43848 -26.22108 -25.44168 -22.81912 -22.50869 -22.02961 -21.40384 -20.53974 -20.10201 -19.41748 -17.44592 -16.86963 -16.45499 -16.22412 -15.95142 -15.87302 -15.55649 -14.97662 -14.74143 -14.57654 -14.35108 -14.18154 -13.85112 -13.67880 -13.32069 -12.98922 -12.52562 -12.39266 -11.91581 -11.76306 -11.62396 -11.59156 -11.49338 -11.19048 -11.06750 -11.01006 -10.83408 -10.68454 -10.63520 -10.41374 -10.35706 -10.16572 -10.01786 -9.86136 -9.67091 -9.63690 -9.23477 -9.02770 -8.34478 -8.20254 -7.69856 -5.86850 -3.86028 1.89279 2.24432 2.86629 3.43429 3.48792 3.49344 3.58689 3.65478 4.23473 4.36826 4.40220 4.54089 4.61924 4.65725 4.73342 4.75677 4.79005 4.96726 5.14185 5.24927 5.33359 5.47749 5.49232 5.52834 5.54734 5.66488 5.70622 5.71702 5.80087 5.80652 5.87990 5.98835 6.03176 6.05100 6.07498 6.13608 6.23063 6.37473 6.46527 6.59441 6.71629 6.98091 7.36021 7.47670 7.67143 7.71201 7.79206 8.11730 8.26152 8.39772 9.19169 9.41212 9.77176 11.22405 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.004495 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.456802 B = 6227.689365 C = 8086.627592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.162 4.162 3 C 0.141 3.859 4 N -0.465 5.465 5 C 0.121 3.879 6 C 0.241 3.759 7 H 0.111 0.889 8 O -0.546 6.546 9 C -0.186 4.186 10 C -0.166 4.166 11 C -0.169 4.169 12 N -0.282 5.282 13 N -0.286 5.286 14 C 0.389 3.611 15 N -0.473 5.473 16 C 0.194 3.806 17 C -0.521 4.521 18 H 0.074 0.926 19 C 0.066 3.934 20 N -0.900 5.900 21 Si 0.886 3.114 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.272 1.272 25 C 0.070 3.930 26 C 0.073 3.927 27 O -0.352 6.352 28 C 0.031 3.969 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.117 0.883 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.387 0.613 35 H 0.111 0.889 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.019 0.981 42 H 0.257 0.743 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.045 0.955 46 H 0.046 0.954 47 H 0.081 0.919 48 H 0.029 0.971 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.066 -3.042 0.075 17.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.181 4.181 3 C 0.018 3.982 4 N -0.160 5.160 5 C -0.146 4.146 6 C 0.179 3.821 7 H 0.128 0.872 8 O -0.352 6.352 9 C -0.206 4.206 10 C -0.203 4.203 11 C -0.206 4.206 12 N -0.124 5.124 13 N -0.129 5.129 14 C 0.033 3.967 15 N -0.200 5.200 16 C 0.071 3.929 17 C -0.560 4.560 18 H 0.092 0.908 19 C -0.135 4.135 20 N -0.541 5.541 21 Si 0.715 3.285 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.196 1.196 25 C -0.058 4.058 26 C -0.005 4.005 27 O -0.270 6.270 28 C -0.066 4.066 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.135 0.865 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.237 0.763 35 H 0.129 0.871 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.117 0.883 40 H 0.091 0.909 41 H 0.037 0.963 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.100 0.900 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.048 0.952 49 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -16.742 -2.981 0.537 17.014 hybrid contribution 1.080 0.152 -0.073 1.093 sum -15.663 -2.830 0.464 15.923 Atomic orbital electron populations 1.23867 0.95467 1.02236 0.99758 1.23137 0.95998 0.98559 1.00400 1.20839 0.91625 0.96458 0.89283 1.46286 1.13653 1.43759 1.12262 1.25180 1.00556 1.04724 0.84163 1.19279 0.89243 0.88429 0.85176 0.87177 1.86514 1.46508 1.84643 1.17505 1.22973 1.03495 0.93311 1.00802 1.22904 1.00900 1.02827 0.93664 1.22941 0.93494 1.00427 1.03718 1.73888 0.97906 1.14280 1.26352 1.74922 1.20384 1.14982 1.02573 1.22703 0.83446 0.97547 0.92981 1.59614 1.31089 1.03567 1.25705 1.20136 0.84406 0.91596 0.96796 1.21724 1.01839 1.32012 1.00442 0.90796 1.24806 0.98355 0.95145 0.95214 1.69954 1.27380 1.32086 1.24640 0.86651 0.82549 0.76916 0.82418 1.20939 1.21714 1.19627 1.22029 1.00780 0.87275 0.95668 1.22430 0.88417 0.95328 0.94318 1.88337 1.45574 1.56622 1.36508 1.22652 1.00623 0.95659 0.87627 0.87890 0.88350 0.86473 0.89148 0.87320 0.76252 0.87081 0.88063 0.88573 0.88781 0.88347 0.90854 0.96253 0.93337 0.91776 0.90005 0.93705 0.93597 0.90049 0.95205 0.94873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 14.32 29.02 0.42 -1.15 16 2 C -0.16 -1.83 9.85 -36.02 -0.35 -2.19 16 3 C 0.14 1.81 6.37 -5.19 -0.03 1.78 16 4 N -0.46 -8.01 2.79 -115.37 -0.32 -8.34 16 5 C 0.12 2.08 6.91 -154.02 -1.06 1.02 16 6 C 0.24 3.12 3.65 -27.88 -0.10 3.02 16 7 H 0.11 1.23 7.15 -51.93 -0.37 0.86 16 8 O -0.55 -7.05 12.48 -35.23 -0.44 -7.49 16 9 C -0.19 -2.22 5.70 -90.62 -0.52 -2.74 16 10 C -0.17 -1.76 9.73 -26.76 -0.26 -2.02 16 11 C -0.17 -1.59 10.19 -26.76 -0.27 -1.86 16 12 N -0.28 -5.94 12.10 32.99 0.40 -5.54 16 13 N -0.29 -6.77 10.41 30.31 0.32 -6.46 16 14 C 0.39 8.23 6.14 -318.88 -1.96 6.27 16 15 N -0.47 -9.91 4.69 -175.89 -0.83 -10.74 16 16 C 0.19 4.94 4.65 -4.98 -0.02 4.92 16 17 C -0.52 -14.68 7.30 -34.44 -0.25 -14.93 16 18 H 0.07 2.15 5.45 -52.48 -0.29 1.87 16 19 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 20 N -0.90 -27.12 13.30 55.43 0.74 -26.39 16 21 Si 0.89 22.98 29.54 -169.99 -5.02 17.96 16 22 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 24 H -0.27 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.07 1.35 5.18 -3.83 -0.02 1.33 16 26 C 0.07 1.20 6.21 37.16 0.23 1.43 16 27 O -0.35 -6.91 7.87 -35.23 -0.28 -7.19 16 28 C 0.03 0.47 11.01 101.05 1.11 1.58 16 29 H 0.10 0.80 8.06 -52.49 -0.42 0.38 16 30 H 0.10 0.73 7.84 -52.48 -0.41 0.32 16 31 H 0.12 1.45 8.06 -52.48 -0.42 1.02 16 32 H 0.09 0.91 6.91 -51.93 -0.36 0.56 16 33 H 0.11 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.39 4.60 7.49 45.56 0.34 4.94 16 35 H 0.11 1.50 8.11 -51.93 -0.42 1.08 16 36 H 0.10 1.00 6.38 -51.93 -0.33 0.67 16 37 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.96 5.68 -51.93 -0.29 1.66 16 41 H 0.02 0.55 8.09 -51.92 -0.42 0.13 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.06 1.11 7.95 -51.93 -0.41 0.70 16 44 H 0.08 1.84 5.90 -51.93 -0.31 1.54 16 45 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 48 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 401.79 15.07 6.05 6.05 Total: -1.00 -34.36 401.79 -9.63 -43.99 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.06 Total: 5.85 kcal Atomic # 6 Polarization: 1.47 SS G_CDS: -3.19 Total: -1.72 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.30 Total: -57.46 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.72 Total: -14.68 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.96 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.36 -9.63 -43.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338663263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.704 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds