Wall clock time and date at job start Tue Mar 31 2020 19:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30990 * 1 3 3 C 1.50706 * 120.00339 * 2 1 4 4 N 1.46499 * 109.46907 * 124.99832 * 3 2 1 5 5 C 1.36739 * 127.13455 * 264.26724 * 4 3 2 6 6 C 1.50695 * 126.34718 * 359.96902 * 5 4 3 7 7 H 1.08993 * 109.47478 * 15.28880 * 6 5 4 8 8 O 1.42906 * 109.46917 * 135.28978 * 6 5 4 9 9 C 1.53006 * 109.47179 * 255.28342 * 6 5 4 10 10 C 1.52995 * 117.49950 * 248.62665 * 9 6 5 11 11 C 1.52995 * 117.49688 * 180.02562 * 9 6 5 12 12 N 1.30296 * 107.30106 * 180.23328 * 5 4 3 13 13 N 1.28529 * 110.05594 * 359.77400 * 12 5 4 14 14 C 1.31213 * 109.85976 * 0.02562 * 13 12 5 15 15 N 1.38580 * 126.47130 * 179.97438 * 14 13 12 16 16 C 1.46896 * 111.00526 * 291.35732 * 15 14 13 17 17 C 1.50700 * 109.47064 * 67.36730 * 16 15 14 18 18 H 1.08009 * 119.99838 * 0.62807 * 17 16 15 19 19 C 1.37877 * 120.00173 * 180.62490 * 17 16 15 20 20 N 1.31512 * 120.00154 * 5.37362 * 19 17 16 21 21 Si 1.86804 * 119.99880 * 185.37239 * 19 17 16 22 22 H 1.48492 * 109.47260 * 94.97774 * 21 19 17 23 23 H 1.48504 * 109.47040 * 214.98013 * 21 19 17 24 24 H 1.48497 * 109.47199 * 334.97223 * 21 19 17 25 25 C 1.46898 * 111.00221 * 55.31655 * 15 14 13 26 26 C 1.52997 * 109.47414 * 162.93387 * 25 15 14 27 27 O 1.42900 * 109.47335 * 68.41038 * 26 25 15 28 28 C 1.42902 * 113.99802 * 184.33328 * 27 26 25 29 29 H 1.07999 * 120.00247 * 179.97438 * 1 2 3 30 30 H 1.08005 * 120.00164 * 0.02562 * 1 2 3 31 31 H 1.08005 * 120.00164 * 179.97438 * 2 1 3 32 32 H 1.08995 * 109.46760 * 4.99426 * 3 2 1 33 33 H 1.08996 * 109.46717 * 244.99811 * 3 2 1 34 34 H 0.96704 * 114.00005 * 59.99289 * 8 6 5 35 35 H 1.09004 * 115.54541 * 34.33283 * 9 6 5 36 36 H 1.09006 * 117.50198 * 359.97438 * 10 9 6 37 37 H 1.08999 * 117.50106 * 145.02704 * 10 9 6 38 38 H 1.08997 * 117.50109 * 214.98144 * 11 9 6 39 39 H 1.08998 * 117.50404 * 359.97438 * 11 9 6 40 40 H 1.08994 * 109.47687 * 187.36982 * 16 15 14 41 41 H 1.09009 * 109.47178 * 307.37694 * 16 15 14 42 42 H 0.96994 * 119.99963 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.47312 * 42.92636 * 25 15 14 44 44 H 1.09003 * 109.46791 * 282.92952 * 25 15 14 45 45 H 1.08996 * 109.47054 * 188.41175 * 26 25 15 46 46 H 1.08998 * 109.47214 * 308.40692 * 26 25 15 47 47 H 1.08999 * 109.46707 * 184.79559 * 28 27 26 48 48 H 1.08997 * 109.46639 * 304.78932 * 28 27 26 49 49 H 1.08992 * 109.47399 * 64.79425 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3318 1.1315 5 6 2.7817 1.8905 2.3614 6 6 1.5343 2.6037 2.8153 7 1 0.7187 2.3833 2.1267 8 8 1.1828 2.1601 4.1275 9 6 1.7890 4.1122 2.8383 10 6 1.8319 4.8008 4.2038 11 6 0.6353 5.0168 3.2759 12 7 3.8604 1.6968 3.0661 13 7 4.7309 1.0545 2.3720 14 6 4.2506 0.8025 1.1773 15 7 4.8990 0.1299 0.1538 16 6 6.0220 0.9207 -0.3672 17 6 7.0928 1.0283 0.6877 18 1 6.9574 0.5479 1.6456 19 6 8.2453 1.7400 0.4302 20 7 8.3657 2.4122 -0.6936 21 14 9.6356 1.7493 1.6778 22 1 10.6257 0.7009 1.3234 23 1 10.2980 3.0784 1.6709 24 1 9.0883 1.4762 3.0310 25 6 5.3499 -1.1958 0.5977 26 6 5.6664 -2.0621 -0.6230 27 8 6.8240 -1.5481 -1.2847 28 6 7.1501 -2.2288 -2.4981 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 1.8641 2.3243 4.7939 35 1 2.4575 4.4879 2.0636 36 1 1.6782 4.1792 5.0860 37 1 2.5287 5.6297 4.3279 38 1 0.5447 5.9879 2.7892 39 1 -0.3052 4.5375 3.5470 40 1 6.4311 0.4322 -1.2515 41 1 5.6718 1.9183 -0.6324 42 1 9.1767 2.9126 -0.8749 43 1 4.5632 -1.6692 1.1852 44 1 6.2457 -1.0889 1.2094 45 1 5.8560 -3.0864 -0.3023 46 1 4.8192 -2.0471 -1.3087 47 1 8.0865 -1.8362 -2.8945 48 1 7.2586 -3.2949 -2.2987 49 1 6.3541 -2.0745 -3.2265 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338663263.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:30:13 Heat of formation + Delta-G solvation = 34.895956 kcal Electronic energy + Delta-G solvation = -30871.533135 eV Core-core repulsion = 26836.999786 eV Total energy + Delta-G solvation = -4034.533348 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.90527 -39.79209 -39.28981 -37.60613 -37.09429 -36.04233 -34.52175 -33.66444 -31.83141 -30.62325 -28.77971 -27.68437 -27.53936 -26.91534 -24.70096 -23.54640 -23.28728 -22.58284 -21.74183 -21.23392 -20.69113 -18.82834 -18.39586 -17.82807 -17.58803 -17.40745 -17.09130 -16.98258 -16.59369 -16.10273 -15.75683 -15.72745 -15.55404 -15.07920 -14.81398 -14.55858 -14.48215 -13.95267 -13.53354 -13.39687 -13.22794 -12.95565 -12.85117 -12.73906 -12.64024 -12.54991 -12.44848 -12.39076 -12.35783 -12.08221 -11.92358 -11.68918 -11.62489 -11.31643 -11.21865 -10.99343 -10.93849 -10.57691 -10.49496 -10.26218 -9.91827 -9.51528 -8.10690 -6.14858 0.78206 0.99782 1.34551 1.34980 1.48128 1.67338 1.92200 2.44610 2.77638 3.00575 3.10957 3.17204 3.22126 3.38868 3.65474 3.75611 3.84979 3.88866 4.03492 4.11244 4.21925 4.32286 4.33374 4.37415 4.47763 4.52293 4.56942 4.61558 4.63316 4.69462 4.80815 4.89573 4.94133 4.98684 4.99929 5.08138 5.11093 5.17321 5.22570 5.29061 5.57889 5.60948 5.64143 5.77494 5.85013 5.92116 6.22762 6.46834 6.48936 6.58053 6.96911 7.49924 7.86492 8.97543 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.004495 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.456802 B = 6227.689365 C = 8086.627592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.192 4.192 3 C 0.135 3.865 4 N -0.458 5.458 5 C 0.142 3.858 6 C 0.247 3.753 7 H 0.138 0.862 8 O -0.545 6.545 9 C -0.205 4.205 10 C -0.175 4.175 11 C -0.138 4.138 12 N -0.321 5.321 13 N -0.335 5.335 14 C 0.366 3.634 15 N -0.456 5.456 16 C 0.217 3.783 17 C -0.516 4.516 18 H 0.061 0.939 19 C 0.015 3.985 20 N -0.929 5.929 21 Si 0.941 3.059 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.280 1.280 25 C 0.072 3.928 26 C 0.077 3.923 27 O -0.398 6.398 28 C 0.029 3.971 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.101 0.899 32 H 0.123 0.877 33 H 0.095 0.905 34 H 0.391 0.609 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.064 0.936 41 H -0.018 1.018 42 H 0.259 0.741 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.056 0.944 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.055 -3.470 0.085 20.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.211 4.211 3 C 0.014 3.986 4 N -0.152 5.152 5 C -0.127 4.127 6 C 0.185 3.815 7 H 0.156 0.844 8 O -0.351 6.351 9 C -0.225 4.225 10 C -0.212 4.212 11 C -0.175 4.175 12 N -0.162 5.162 13 N -0.178 5.178 14 C 0.009 3.991 15 N -0.182 5.182 16 C 0.092 3.908 17 C -0.555 4.555 18 H 0.079 0.921 19 C -0.182 4.182 20 N -0.571 5.571 21 Si 0.768 3.232 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.206 1.206 25 C -0.056 4.056 26 C 0.001 3.999 27 O -0.318 6.318 28 C -0.067 4.067 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.119 0.881 32 H 0.141 0.859 33 H 0.114 0.886 34 H 0.242 0.758 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.126 0.874 39 H 0.132 0.868 40 H 0.082 0.918 41 H 0.000 1.000 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.754 -3.428 0.541 20.057 hybrid contribution 1.833 0.290 -0.043 1.857 sum -17.921 -3.138 0.498 18.200 Atomic orbital electron populations 1.24174 0.94379 1.04109 0.95240 1.22889 0.96788 0.96923 1.04485 1.21186 0.91336 0.98922 0.87170 1.46525 1.13001 1.42294 1.13370 1.26143 1.00743 1.02276 0.83510 1.19573 0.87818 0.88491 0.85593 0.84442 1.86506 1.46469 1.84690 1.17451 1.22822 1.05554 0.92880 1.01213 1.23014 1.01983 1.02736 0.93467 1.23026 0.92957 1.00096 1.01427 1.73764 0.99125 1.15916 1.27443 1.74761 1.22438 1.16506 1.04085 1.22726 0.85048 0.98758 0.92599 1.59552 1.29125 1.03558 1.25963 1.19648 0.84994 0.90151 0.95993 1.21886 1.02427 1.30900 1.00335 0.92146 1.25499 1.00561 0.95295 0.96886 1.70047 1.27995 1.33043 1.26048 0.85792 0.80248 0.77280 0.79840 1.19681 1.21160 1.20573 1.22076 0.99586 0.86998 0.96895 1.22481 0.88360 0.95737 0.93365 1.88245 1.46700 1.58495 1.38331 1.22784 1.00750 0.96818 0.86376 0.86311 0.86029 0.88098 0.85856 0.88635 0.75842 0.89171 0.87347 0.88933 0.87425 0.86835 0.91806 0.99957 0.93260 0.90003 0.93813 0.90702 0.91750 0.90814 0.92504 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 14.32 67.79 0.97 -0.99 16 2 C -0.19 -3.96 9.85 25.66 0.25 -3.71 16 3 C 0.13 3.31 6.37 85.63 0.55 3.86 16 4 N -0.46 -15.86 2.79 -518.92 -1.45 -17.31 16 5 C 0.14 4.87 6.91 137.64 0.95 5.82 16 6 C 0.25 5.89 3.65 29.85 0.11 6.00 16 7 H 0.14 2.52 7.15 -2.39 -0.02 2.51 16 8 O -0.55 -12.89 12.48 -148.98 -1.86 -14.74 16 9 C -0.21 -4.56 5.70 -10.80 -0.06 -4.62 16 10 C -0.18 -3.44 9.73 30.58 0.30 -3.14 16 11 C -0.14 -2.16 10.19 30.58 0.31 -1.85 16 12 N -0.32 -13.92 12.10 -49.54 -0.60 -14.52 16 13 N -0.34 -16.59 10.41 -58.01 -0.60 -17.19 16 14 C 0.37 16.05 6.14 260.11 1.60 17.65 16 15 N -0.46 -19.84 4.69 -710.38 -3.33 -23.18 16 16 C 0.22 11.61 4.65 85.56 0.40 12.01 16 17 C -0.52 -30.38 7.30 25.60 0.19 -30.19 16 18 H 0.06 3.70 5.45 -2.91 -0.02 3.69 16 19 C 0.02 0.92 5.45 84.66 0.46 1.38 16 20 N -0.93 -57.73 13.30 21.45 0.29 -57.44 16 21 Si 0.94 48.63 29.54 68.60 2.03 50.66 16 22 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 23 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 24 H -0.28 -14.77 7.11 99.48 0.71 -14.06 16 25 C 0.07 2.84 5.18 86.30 0.45 3.29 16 26 C 0.08 2.52 6.21 71.98 0.45 2.97 16 27 O -0.40 -15.75 7.87 -148.98 -1.17 -16.92 16 28 C 0.03 0.85 11.01 113.37 1.25 2.10 16 29 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 30 H 0.12 1.15 7.84 -2.91 -0.02 1.13 16 31 H 0.10 2.41 8.06 -2.91 -0.02 2.38 16 32 H 0.12 2.14 6.91 -2.39 -0.02 2.12 16 33 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.39 8.81 7.49 -74.05 -0.55 8.26 16 35 H 0.09 2.41 8.11 -2.39 -0.02 2.39 16 36 H 0.11 1.95 6.38 -2.38 -0.02 1.94 16 37 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 3.56 5.68 -2.39 -0.01 3.55 16 41 H -0.02 -1.06 8.09 -2.38 -0.02 -1.08 16 42 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.08 2.89 7.95 -2.39 -0.02 2.87 16 44 H 0.04 2.07 5.90 -2.39 -0.01 2.05 16 45 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -78.98 401.79 1.86 -77.13 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: 0.40 Total: 22.96 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 8.16 Total: 10.56 kcal Atomic # 7 Polarization: -123.94 SS G_CDS: -5.70 Total: -129.64 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -3.03 Total: -31.67 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -78.98 1.86 -77.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338663263.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.022 kcal (2) G-P(sol) polarization free energy of solvation -78.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds