Wall clock time and date at job start Tue Mar 31 2020 20:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99933 * 2 1 4 4 N 1.46895 * 109.47126 * 125.26852 * 3 2 1 5 5 C 1.46899 * 111.00131 * 297.25411 * 4 3 2 6 6 C 1.50702 * 109.47412 * 288.16960 * 5 4 3 7 7 H 1.07999 * 119.99634 * 355.96830 * 6 5 4 8 8 C 1.37874 * 120.00275 * 175.69265 * 6 5 4 9 9 N 1.31519 * 119.99940 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00126 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.47129 * 60.00149 * 10 8 6 12 12 H 1.48498 * 109.47266 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47397 * 300.00347 * 10 8 6 14 14 C 1.38374 * 110.99863 * 61.20947 * 4 3 2 15 15 N 1.31479 * 126.44046 * 252.65694 * 14 4 3 16 16 N 1.28424 * 110.51132 * 179.81472 * 15 14 4 17 17 N 1.28918 * 110.31330 * 0.46281 * 16 15 14 18 18 N 1.35314 * 126.44081 * 72.96892 * 14 4 3 19 19 C 1.46500 * 127.38045 * 0.02562 * 18 14 4 20 20 C 1.52993 * 109.47472 * 94.99552 * 19 18 14 21 21 C 1.52998 * 109.47277 * 179.97438 * 20 19 18 22 22 N 1.46905 * 109.47048 * 179.97438 * 21 20 19 23 23 C 1.47008 * 110.99960 * 293.63493 * 22 21 20 24 24 C 1.53097 * 109.25486 * 177.60787 * 23 22 21 25 25 O 1.43011 * 109.26084 * 56.85301 * 24 23 22 26 26 C 1.43015 * 113.73602 * 301.32975 * 25 24 23 27 27 C 1.47019 * 110.99461 * 170.00002 * 22 21 20 28 28 H 1.08003 * 119.99509 * 179.97438 * 1 2 3 29 29 H 1.07993 * 119.99948 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.00692 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47007 * 5.27259 * 3 2 1 32 32 H 1.08991 * 109.47312 * 245.27586 * 3 2 1 33 33 H 1.09005 * 109.47180 * 168.17088 * 5 4 3 34 34 H 1.09001 * 109.47401 * 48.17228 * 5 4 3 35 35 H 0.96993 * 119.99875 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.46615 * 214.99768 * 19 18 14 37 37 H 1.08997 * 109.46687 * 334.99229 * 19 18 14 38 38 H 1.08999 * 109.47138 * 300.00493 * 20 19 18 39 39 H 1.09006 * 109.46998 * 59.99739 * 20 19 18 40 40 H 1.09000 * 109.46847 * 300.00239 * 21 20 19 41 41 H 1.09005 * 109.46663 * 60.00088 * 21 20 19 42 42 H 1.08997 * 109.50920 * 297.54623 * 23 22 21 43 43 H 1.09003 * 109.50931 * 57.67568 * 23 22 21 44 44 H 1.08995 * 109.51088 * 296.91230 * 24 23 22 45 45 H 1.09005 * 109.54433 * 176.80800 * 24 23 22 46 46 H 1.09002 * 109.50620 * 298.73527 * 26 25 24 47 47 H 1.09004 * 109.54173 * 178.62719 * 26 25 24 48 48 H 1.08992 * 109.51017 * 302.32482 * 27 22 21 49 49 H 1.09003 * 109.50594 * 62.42217 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 3.0009 1.3294 1.1307 5 6 2.2835 1.2625 2.4109 6 6 1.5808 2.5718 2.6619 7 1 1.7118 3.3953 1.9755 8 6 0.7661 2.7167 3.7648 9 7 0.6026 1.7123 4.5980 10 14 -0.1043 4.3398 4.0763 11 1 -0.9944 4.6523 2.9293 12 1 -0.9141 4.2371 5.3169 13 1 0.9028 5.4201 4.2300 14 6 3.9283 0.3075 1.0280 15 7 3.9726 -0.7834 1.7606 16 7 4.9576 -1.5258 1.4030 17 7 5.6099 -0.9705 0.4396 18 7 4.9634 0.2459 0.1587 19 6 5.3319 1.2351 -0.8571 20 6 6.3985 2.1746 -0.2910 21 6 6.7837 3.2073 -1.3522 22 7 7.8074 4.1097 -0.8083 23 6 7.2617 4.9277 0.2845 24 6 8.3741 5.8081 0.8601 25 8 8.9333 6.6063 -0.1865 26 6 9.4745 5.8417 -1.2672 27 6 8.3733 4.9617 -1.8644 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3589 2.1315 0.0944 32 1 2.6174 1.4049 -0.9334 33 1 2.9933 1.0710 3.2157 34 1 1.5496 0.4574 2.3745 35 1 0.0298 1.8143 5.3740 36 1 5.7267 0.7242 -1.7353 37 1 4.4511 1.8126 -1.1381 38 1 6.0036 2.6854 0.5872 39 1 7.2792 1.5970 -0.0100 40 1 7.1787 2.6960 -2.2301 41 1 5.9031 3.7848 -1.6335 42 1 6.4597 5.5587 -0.0986 43 1 6.8713 4.2766 1.0667 44 1 9.1513 5.1771 1.2914 45 1 7.9623 6.4575 1.6327 46 1 10.2836 5.2116 -0.8978 47 1 9.8583 6.5149 -2.0338 48 1 8.7943 4.3353 -2.6508 49 1 7.5888 5.5927 -2.2824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001340234446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:37 Heat of formation + Delta-G solvation = 114.091671 kcal Electronic energy + Delta-G solvation = -29921.455813 eV Core-core repulsion = 25922.649400 eV Total energy + Delta-G solvation = -3998.806413 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.49082 -39.84570 -37.88778 -36.88600 -35.11267 -33.14987 -32.65937 -31.85194 -31.35174 -30.47585 -28.06018 -27.48439 -25.81820 -24.82781 -24.31637 -23.03275 -22.39674 -21.42447 -20.74530 -20.61876 -19.53604 -17.32721 -16.68959 -16.44551 -16.28410 -16.10497 -15.92248 -15.81552 -15.33805 -15.24258 -14.92072 -14.65047 -14.44160 -14.21769 -13.88349 -13.42266 -13.04027 -12.82878 -12.55563 -12.47406 -12.33499 -12.24489 -11.99025 -11.71468 -11.66367 -11.46258 -11.21630 -11.08151 -11.00099 -10.92205 -10.74474 -10.68678 -10.41081 -10.32415 -10.12802 -9.92605 -9.86877 -9.52485 -9.03044 -8.71540 -8.57028 -8.02232 -6.15022 -4.20637 1.44186 2.09456 2.56277 2.87722 3.23686 3.29913 3.30609 3.39925 3.62268 4.09855 4.37819 4.41354 4.50450 4.63861 4.67868 4.82738 4.87002 4.89899 4.98588 5.03213 5.07859 5.14360 5.20294 5.25545 5.28390 5.31057 5.37265 5.42392 5.48408 5.55739 5.58512 5.66139 5.71379 5.87777 5.96879 5.98919 6.09214 6.19815 6.31594 6.61712 6.64131 6.86558 6.88061 6.93047 7.03876 7.17457 7.48682 7.60132 7.88815 8.17893 8.82560 9.04205 9.43491 10.94843 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.003542 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.345533 B = 7902.897904 C = 9886.036497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.192 4.192 3 C 0.095 3.905 4 N -0.450 5.450 5 C 0.204 3.796 6 C -0.523 4.523 7 H 0.064 0.936 8 C 0.064 3.936 9 N -0.886 5.886 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.442 3.558 15 N -0.353 5.353 16 N -0.040 5.040 17 N -0.108 5.108 18 N -0.392 5.392 19 C 0.134 3.866 20 C -0.132 4.132 21 C 0.062 3.938 22 N -0.537 5.537 23 C 0.012 3.988 24 C 0.064 3.936 25 O -0.387 6.387 26 C 0.064 3.936 27 C 0.018 3.982 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.047 0.953 43 H 0.093 0.907 44 H 0.060 0.940 45 H 0.100 0.900 46 H 0.059 0.941 47 H 0.096 0.904 48 H 0.086 0.914 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.436 5.855 -15.426 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.211 4.211 3 C -0.031 4.031 4 N -0.175 5.175 5 C 0.081 3.919 6 C -0.561 4.561 7 H 0.082 0.918 8 C -0.139 4.139 9 N -0.523 5.523 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.076 3.924 15 N -0.211 5.211 16 N -0.036 5.036 17 N -0.095 5.095 18 N -0.191 5.191 19 C 0.011 3.989 20 C -0.171 4.171 21 C -0.067 4.067 22 N -0.262 5.262 23 C -0.116 4.116 24 C -0.013 4.013 25 O -0.305 6.305 26 C -0.014 4.014 27 C -0.110 4.110 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.078 0.922 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.115 0.885 48 H 0.104 0.896 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 12.515 4.967 -14.675 19.916 hybrid contribution -1.738 1.185 -0.356 2.133 sum 10.777 6.152 -15.031 19.491 Atomic orbital electron populations 1.23791 0.95671 1.01828 0.98187 1.23388 0.97115 0.98475 1.02154 1.21408 0.93887 0.96842 0.90975 1.59519 1.16070 1.32867 1.09023 1.19963 0.92957 0.98480 0.80469 1.20936 1.27926 0.97523 1.09740 0.91766 1.24930 0.96379 0.96837 0.95800 1.69963 1.37904 1.30811 1.13655 0.86545 0.79555 0.83535 0.77684 1.20162 1.21177 1.20123 1.23742 0.90857 0.90830 0.86931 1.75119 1.17121 1.02013 1.26846 1.77859 1.00594 1.20622 1.04543 1.82405 1.18893 0.92564 1.15662 1.51377 1.20758 1.17854 1.29125 1.21795 1.00311 0.88127 0.88716 1.21939 0.98810 0.96810 0.99563 1.21982 0.93525 0.94047 0.97102 1.62165 1.34061 1.19780 1.10176 1.22888 0.96995 0.96248 0.95430 1.22692 0.95075 0.93899 0.89676 1.87988 1.77908 1.33515 1.31137 1.22647 0.94784 0.94312 0.89619 1.22784 0.98108 0.95767 0.94380 0.88878 0.87919 0.88417 0.87110 0.91570 0.94227 0.95251 0.92496 0.88442 0.87921 0.90184 0.89966 0.90224 0.93946 0.93490 0.88828 0.92203 0.88179 0.92276 0.88544 0.89607 0.93826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 14.32 29.01 0.42 -2.07 16 2 C -0.19 -3.26 7.59 -36.02 -0.27 -3.54 16 3 C 0.10 1.57 5.49 -4.98 -0.03 1.55 16 4 N -0.45 -8.87 4.65 -177.59 -0.83 -9.69 16 5 C 0.20 5.02 4.08 -4.98 -0.02 5.00 16 6 C -0.52 -13.40 8.50 -34.44 -0.29 -13.69 16 7 H 0.06 1.58 7.64 -52.49 -0.40 1.18 16 8 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 10 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 11 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 14 C 0.44 8.57 5.83 -320.41 -1.87 6.71 16 15 N -0.35 -7.75 11.28 30.10 0.34 -7.41 16 16 N -0.04 -0.83 13.38 60.35 0.81 -0.02 16 17 N -0.11 -1.97 13.93 60.35 0.84 -1.13 16 18 N -0.39 -6.36 3.69 -61.86 -0.23 -6.59 16 19 C 0.13 1.50 6.44 -4.05 -0.03 1.47 16 20 C -0.13 -1.43 5.47 -26.74 -0.15 -1.57 16 21 C 0.06 0.53 4.96 -3.82 -0.02 0.52 16 22 N -0.54 -5.14 4.73 -234.30 -1.11 -6.24 16 23 C 0.01 0.13 5.44 -3.71 -0.02 0.11 16 24 C 0.06 0.62 7.01 37.21 0.26 0.88 16 25 O -0.39 -4.16 10.83 -35.23 -0.38 -4.54 16 26 C 0.06 0.52 7.01 37.21 0.26 0.78 16 27 C 0.02 0.14 5.65 -3.71 -0.02 0.12 16 28 H 0.09 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.10 1.57 7.84 -52.49 -0.41 1.16 16 30 H 0.10 1.78 7.64 -52.49 -0.40 1.38 16 31 H 0.11 1.87 6.95 -51.93 -0.36 1.51 16 32 H 0.07 0.88 6.26 -51.93 -0.33 0.55 16 33 H 0.04 1.10 7.79 -51.93 -0.40 0.70 16 34 H 0.03 0.79 6.83 -51.93 -0.35 0.43 16 35 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 36 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.10 1.04 6.13 -51.93 -0.32 0.72 16 38 H 0.08 1.03 6.52 -51.93 -0.34 0.70 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.56 8.04 -51.93 -0.42 0.15 16 41 H 0.04 0.36 8.12 -51.93 -0.42 -0.06 16 42 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.09 1.03 6.38 -51.93 -0.33 0.69 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.09 0.55 8.09 -51.93 -0.42 0.13 16 49 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -31.07 395.56 -8.60 -39.67 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -7.85 Total: 1.36 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.87 Total: -2.14 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: 0.56 Total: -55.56 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: -0.38 Total: -4.54 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.07 -8.60 -39.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340234446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.757 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds