Wall clock time and date at job start Tue Mar 31 2020 20:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99933 * 2 1 4 4 N 1.46895 * 109.47126 * 125.26852 * 3 2 1 5 5 C 1.46899 * 111.00131 * 297.25411 * 4 3 2 6 6 C 1.50702 * 109.47412 * 288.16960 * 5 4 3 7 7 H 1.07999 * 119.99634 * 355.96830 * 6 5 4 8 8 C 1.37874 * 120.00275 * 175.69265 * 6 5 4 9 9 N 1.31519 * 119.99940 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00126 * 179.97438 * 8 6 5 11 11 H 1.48509 * 109.47129 * 60.00149 * 10 8 6 12 12 H 1.48498 * 109.47266 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47397 * 300.00347 * 10 8 6 14 14 C 1.38374 * 110.99863 * 61.20947 * 4 3 2 15 15 N 1.31479 * 126.44046 * 252.65694 * 14 4 3 16 16 N 1.28424 * 110.51132 * 179.81472 * 15 14 4 17 17 N 1.28918 * 110.31330 * 0.46281 * 16 15 14 18 18 N 1.35314 * 126.44081 * 72.96892 * 14 4 3 19 19 C 1.46500 * 127.38045 * 0.02562 * 18 14 4 20 20 C 1.52993 * 109.47472 * 94.99552 * 19 18 14 21 21 C 1.52998 * 109.47277 * 179.97438 * 20 19 18 22 22 N 1.46905 * 109.47048 * 179.97438 * 21 20 19 23 23 C 1.47008 * 110.99960 * 293.63493 * 22 21 20 24 24 C 1.53097 * 109.25486 * 177.60787 * 23 22 21 25 25 O 1.43011 * 109.26084 * 56.85301 * 24 23 22 26 26 C 1.43015 * 113.73602 * 301.32975 * 25 24 23 27 27 C 1.47019 * 110.99461 * 170.00002 * 22 21 20 28 28 H 1.08003 * 119.99509 * 179.97438 * 1 2 3 29 29 H 1.07993 * 119.99948 * 0.02562 * 1 2 3 30 30 H 1.07991 * 120.00692 * 179.97438 * 2 1 3 31 31 H 1.09005 * 109.47007 * 5.27259 * 3 2 1 32 32 H 1.08991 * 109.47312 * 245.27586 * 3 2 1 33 33 H 1.09005 * 109.47180 * 168.17088 * 5 4 3 34 34 H 1.09001 * 109.47401 * 48.17228 * 5 4 3 35 35 H 0.96993 * 119.99875 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.46615 * 214.99768 * 19 18 14 37 37 H 1.08997 * 109.46687 * 334.99229 * 19 18 14 38 38 H 1.08999 * 109.47138 * 300.00493 * 20 19 18 39 39 H 1.09006 * 109.46998 * 59.99739 * 20 19 18 40 40 H 1.09000 * 109.46847 * 300.00239 * 21 20 19 41 41 H 1.09005 * 109.46663 * 60.00088 * 21 20 19 42 42 H 1.08997 * 109.50920 * 297.54623 * 23 22 21 43 43 H 1.09003 * 109.50931 * 57.67568 * 23 22 21 44 44 H 1.08995 * 109.51088 * 296.91230 * 24 23 22 45 45 H 1.09005 * 109.54433 * 176.80800 * 24 23 22 46 46 H 1.09002 * 109.50620 * 298.73527 * 26 25 24 47 47 H 1.09004 * 109.54173 * 178.62719 * 26 25 24 48 48 H 1.08992 * 109.51017 * 302.32482 * 27 22 21 49 49 H 1.09003 * 109.50594 * 62.42217 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3052 0.0000 4 7 3.0009 1.3294 1.1307 5 6 2.2835 1.2625 2.4109 6 6 1.5808 2.5718 2.6619 7 1 1.7118 3.3953 1.9755 8 6 0.7661 2.7167 3.7648 9 7 0.6026 1.7123 4.5980 10 14 -0.1043 4.3398 4.0763 11 1 -0.9944 4.6523 2.9293 12 1 -0.9141 4.2371 5.3169 13 1 0.9028 5.4201 4.2300 14 6 3.9283 0.3075 1.0280 15 7 3.9726 -0.7834 1.7606 16 7 4.9576 -1.5258 1.4030 17 7 5.6099 -0.9705 0.4396 18 7 4.9634 0.2459 0.1587 19 6 5.3319 1.2351 -0.8571 20 6 6.3985 2.1746 -0.2910 21 6 6.7837 3.2073 -1.3522 22 7 7.8074 4.1097 -0.8083 23 6 7.2617 4.9277 0.2845 24 6 8.3741 5.8081 0.8601 25 8 8.9333 6.6063 -0.1865 26 6 9.4745 5.8417 -1.2672 27 6 8.3733 4.9617 -1.8644 28 1 -0.5399 -0.9354 -0.0004 29 1 -0.5400 0.9352 -0.0004 30 1 1.8501 -0.9352 0.0004 31 1 1.3589 2.1315 0.0944 32 1 2.6174 1.4049 -0.9334 33 1 2.9933 1.0710 3.2157 34 1 1.5496 0.4574 2.3745 35 1 0.0298 1.8143 5.3740 36 1 5.7267 0.7242 -1.7353 37 1 4.4511 1.8126 -1.1381 38 1 6.0036 2.6854 0.5872 39 1 7.2792 1.5970 -0.0100 40 1 7.1787 2.6960 -2.2301 41 1 5.9031 3.7848 -1.6335 42 1 6.4597 5.5587 -0.0986 43 1 6.8713 4.2766 1.0667 44 1 9.1513 5.1771 1.2914 45 1 7.9623 6.4575 1.6327 46 1 10.2836 5.2116 -0.8978 47 1 9.8583 6.5149 -2.0338 48 1 8.7943 4.3353 -2.6508 49 1 7.5888 5.5927 -2.2824 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001340234446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:35 Heat of formation + Delta-G solvation = 92.489512 kcal Electronic energy + Delta-G solvation = -29922.392553 eV Core-core repulsion = 25922.649400 eV Total energy + Delta-G solvation = -3999.743153 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.00171 -40.56655 -39.43442 -37.76602 -36.20323 -34.90276 -34.26970 -32.88618 -32.13102 -32.01737 -29.37118 -28.91633 -27.12840 -26.00427 -25.03704 -24.74987 -23.68857 -22.43493 -22.24874 -21.34696 -20.91328 -18.62719 -18.17874 -17.82672 -17.55733 -17.22175 -17.16879 -16.73691 -16.54716 -16.16656 -16.00753 -15.85598 -15.59832 -15.35660 -14.95748 -14.80813 -14.27093 -14.11851 -13.98321 -13.80291 -13.39853 -13.28517 -13.15744 -12.92969 -12.88685 -12.72171 -12.54841 -12.36024 -12.34967 -12.20104 -12.16568 -11.96538 -11.76200 -11.61952 -11.43982 -11.36898 -11.35593 -10.68142 -10.61052 -10.36016 -9.66975 -9.42819 -8.18554 -6.31402 -0.02392 0.76035 1.15979 1.40388 1.46548 1.48686 1.56493 2.38782 2.65231 2.76428 2.94921 3.15642 3.26673 3.60433 3.73878 3.89954 3.90403 3.95811 4.01404 4.05395 4.11180 4.15731 4.18164 4.26929 4.31043 4.37853 4.42803 4.56053 4.59895 4.63467 4.72746 4.74995 4.81325 4.88069 4.90584 4.94725 4.97933 5.04037 5.10390 5.13664 5.29729 5.51199 5.62638 5.69891 5.85753 5.88846 5.92545 5.97352 6.16455 6.26978 6.81100 7.37641 7.50607 8.92406 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008960 B = 0.003542 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3124.345533 B = 7902.897904 C = 9886.036497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.207 4.207 3 C 0.094 3.906 4 N -0.444 5.444 5 C 0.228 3.772 6 C -0.525 4.525 7 H 0.078 0.922 8 C 0.011 3.989 9 N -0.929 5.929 10 Si 0.968 3.032 11 H -0.259 1.259 12 H -0.290 1.290 13 H -0.269 1.269 14 C 0.434 3.566 15 N -0.393 5.393 16 N -0.063 5.063 17 N -0.097 5.097 18 N -0.371 5.371 19 C 0.122 3.878 20 C -0.121 4.121 21 C 0.068 3.932 22 N -0.548 5.548 23 C 0.015 3.985 24 C 0.063 3.937 25 O -0.406 6.406 26 C 0.058 3.942 27 C 0.020 3.980 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.106 0.894 33 H -0.005 1.005 34 H 0.002 0.998 35 H 0.265 0.735 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.049 0.951 42 H 0.041 0.959 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.105 0.895 46 H 0.059 0.941 47 H 0.117 0.883 48 H 0.107 0.893 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.652 7.661 -18.244 22.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.227 4.227 3 C -0.032 4.032 4 N -0.168 5.168 5 C 0.104 3.896 6 C -0.564 4.564 7 H 0.096 0.904 8 C -0.189 4.189 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.183 1.183 12 H -0.216 1.216 13 H -0.194 1.194 14 C 0.068 3.932 15 N -0.251 5.251 16 N -0.059 5.059 17 N -0.084 5.084 18 N -0.172 5.172 19 C 0.001 3.999 20 C -0.160 4.160 21 C -0.060 4.060 22 N -0.273 5.273 23 C -0.113 4.113 24 C -0.013 4.013 25 O -0.325 6.325 26 C -0.019 4.019 27 C -0.108 4.108 28 H 0.123 0.877 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.129 0.871 32 H 0.124 0.876 33 H 0.013 0.987 34 H 0.020 0.980 35 H 0.074 0.926 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.123 0.877 46 H 0.077 0.923 47 H 0.135 0.865 48 H 0.125 0.875 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 12.756 6.785 -17.551 22.733 hybrid contribution -1.706 0.601 0.433 1.860 sum 11.050 7.386 -17.118 21.672 Atomic orbital electron populations 1.23993 0.95438 1.02828 0.96526 1.23332 0.97558 0.98098 1.03717 1.21589 0.93868 0.96488 0.91215 1.59435 1.16274 1.32944 1.08143 1.19388 0.91243 0.97319 0.81698 1.21270 1.27334 0.98008 1.09770 0.90441 1.25845 0.97225 1.00267 0.95524 1.70123 1.39047 1.33306 1.14384 0.85451 0.78496 0.79045 0.77738 1.18348 1.21619 1.19440 1.23556 0.91528 0.90457 0.87646 1.75005 1.18268 1.03483 1.28394 1.77834 1.01035 1.21266 1.05720 1.82276 1.18337 0.93066 1.14721 1.51611 1.19136 1.17628 1.28782 1.22361 1.01448 0.87679 0.88376 1.21810 0.97858 0.96884 0.99489 1.21968 0.93869 0.93424 0.96753 1.62164 1.34336 1.20136 1.10705 1.22795 0.96937 0.96001 0.95545 1.22698 0.94929 0.93915 0.89799 1.87961 1.78106 1.34525 1.31876 1.22860 0.94823 0.94777 0.89444 1.22840 0.97897 0.95826 0.94222 0.87721 0.87108 0.89978 0.87112 0.87618 0.98665 0.98041 0.92647 0.84953 0.86102 0.92735 0.91234 0.87721 0.93228 0.94118 0.90191 0.92389 0.87701 0.92287 0.86493 0.87456 0.93946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.62 14.32 67.78 0.97 -3.64 16 2 C -0.21 -6.95 7.59 25.64 0.19 -6.75 16 3 C 0.09 2.95 5.49 85.56 0.47 3.42 16 4 N -0.44 -17.44 4.65 -715.78 -3.33 -20.76 16 5 C 0.23 11.55 4.08 85.56 0.35 11.90 16 6 C -0.53 -26.98 8.50 25.60 0.22 -26.76 16 7 H 0.08 3.70 7.64 -2.91 -0.02 3.68 16 8 C 0.01 0.58 5.46 84.65 0.46 1.04 16 9 N -0.93 -54.21 13.29 21.45 0.28 -53.93 16 10 Si 0.97 41.16 29.54 68.60 2.03 43.19 16 11 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 12 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 13 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 14 C 0.43 16.94 5.83 260.65 1.52 18.45 16 15 N -0.39 -17.85 11.28 -58.69 -0.66 -18.51 16 16 N -0.06 -2.64 13.38 37.02 0.50 -2.15 16 17 N -0.10 -3.46 13.93 37.02 0.52 -2.95 16 18 N -0.37 -11.64 3.69 -349.64 -1.29 -12.93 16 19 C 0.12 2.39 6.44 86.38 0.56 2.94 16 20 C -0.12 -2.40 5.47 30.59 0.17 -2.23 16 21 C 0.07 0.98 4.96 86.30 0.43 1.40 16 22 N -0.55 -9.42 4.73 -895.20 -4.23 -13.65 16 23 C 0.02 0.31 5.44 86.32 0.47 0.78 16 24 C 0.06 1.21 7.01 72.01 0.50 1.72 16 25 O -0.41 -8.26 10.83 -148.98 -1.61 -9.87 16 26 C 0.06 0.82 7.01 72.02 0.50 1.33 16 27 C 0.02 0.26 5.65 86.31 0.49 0.75 16 28 H 0.10 2.93 8.06 -2.91 -0.02 2.90 16 29 H 0.11 3.22 7.84 -2.91 -0.02 3.19 16 30 H 0.08 3.02 7.64 -2.92 -0.02 3.00 16 31 H 0.11 3.52 6.95 -2.38 -0.02 3.50 16 32 H 0.11 2.46 6.26 -2.39 -0.01 2.44 16 33 H 0.00 -0.28 7.79 -2.38 -0.02 -0.30 16 34 H 0.00 0.09 6.83 -2.39 -0.02 0.08 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 36 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.12 1.99 6.13 -2.39 -0.01 1.97 16 38 H 0.05 1.38 6.52 -2.39 -0.02 1.36 16 39 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 40 H 0.10 1.02 8.04 -2.39 -0.02 1.00 16 41 H 0.05 0.67 8.12 -2.38 -0.02 0.65 16 42 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 1.78 6.38 -2.39 -0.02 1.76 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.10 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.11 0.97 8.09 -2.39 -0.02 0.95 16 49 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -69.74 395.56 0.43 -69.30 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.93 Total: 17.91 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: 7.30 Total: 4.34 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -8.21 Total: -124.87 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -1.61 Total: -9.87 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -69.74 0.43 -69.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001340234446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.794 kcal (2) G-P(sol) polarization free energy of solvation -69.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds