Wall clock time and date at job start Tue Mar 31 2020 19:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99811 * 2 1 4 4 C 1.52999 * 109.47035 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47151 * 184.44105 * 4 3 2 6 6 C 1.36732 * 127.13625 * 269.35909 * 5 4 3 7 7 C 1.50701 * 126.35158 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.46587 * 270.28120 * 7 6 5 9 9 C 1.50696 * 109.47085 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00436 * 359.97438 * 9 8 7 11 11 C 1.37886 * 119.99998 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99835 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99688 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47426 * 60.00051 * 13 11 9 15 15 H 1.48505 * 109.46942 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47165 * 299.99317 * 13 11 9 17 17 N 1.30298 * 107.30580 * 180.22595 * 6 5 4 18 18 N 1.28530 * 110.05171 * 359.77857 * 17 6 5 19 19 C 1.31222 * 109.85913 * 0.02562 * 18 17 6 20 20 N 1.38581 * 126.47461 * 179.97438 * 19 18 17 21 21 C 1.47053 * 111.00085 * 60.50928 * 20 19 18 22 22 C 1.55007 * 108.79574 * 181.56950 * 21 20 19 23 23 H 1.09003 * 112.14900 * 186.24659 * 22 21 20 24 24 C 1.54712 * 108.45271 * 311.29133 * 22 21 20 25 25 C 1.54547 * 103.82253 * 87.79317 * 24 22 21 26 26 C 1.54719 * 103.82254 * 0.02562 * 25 24 22 27 27 H 1.08990 * 112.16139 * 147.18546 * 26 25 24 28 28 C 1.47052 * 110.99691 * 296.25332 * 20 19 18 29 29 O 1.44649 * 106.58965 * 63.12156 * 22 21 20 30 30 H 1.08997 * 109.47403 * 300.00028 * 1 2 3 31 31 H 1.08999 * 109.47168 * 60.00504 * 1 2 3 32 32 H 1.09001 * 109.46624 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47418 * 59.99997 * 3 2 1 34 34 H 1.08998 * 109.47200 * 299.99636 * 3 2 1 35 35 H 1.09000 * 109.47125 * 64.44039 * 4 3 2 36 36 H 1.09002 * 109.47146 * 304.44554 * 4 3 2 37 37 H 1.09000 * 109.47125 * 30.27617 * 7 6 5 38 38 H 1.09001 * 109.47380 * 150.28289 * 7 6 5 39 39 H 1.09000 * 109.46978 * 299.99588 * 8 7 6 40 40 H 1.08998 * 109.47391 * 59.99298 * 8 7 6 41 41 H 0.97002 * 119.99561 * 179.97438 * 12 11 9 42 42 H 1.09004 * 109.56785 * 301.61553 * 21 20 19 43 43 H 1.09002 * 109.56939 * 61.85213 * 21 20 19 44 44 H 1.09000 * 110.56006 * 206.37865 * 24 22 21 45 45 H 1.09002 * 110.55941 * 329.20755 * 24 22 21 46 46 H 1.08998 * 110.56124 * 241.41380 * 25 24 22 47 47 H 1.09006 * 110.55558 * 118.58605 * 25 24 22 48 48 H 1.08994 * 109.57400 * 58.38271 * 28 20 19 49 49 H 1.09000 * 109.56434 * 298.02171 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1309 2.5190 0.1076 6 6 4.4847 3.3498 -0.9191 7 6 4.3353 3.0641 -2.3913 8 6 5.5999 2.3751 -2.9079 9 6 5.4504 2.0889 -4.3799 10 1 4.5438 2.3699 -4.8953 11 6 6.4705 1.4673 -5.0685 12 7 7.5742 1.1247 -4.4408 13 14 6.2853 1.1132 -6.8932 14 1 6.0822 2.3882 -7.6268 15 1 7.5127 0.4443 -7.3947 16 1 5.1143 0.2259 -7.1089 17 7 4.9800 4.4320 -0.3889 18 7 4.9590 4.3441 0.8932 19 6 4.4455 3.1912 1.2526 20 7 4.2618 2.7398 2.5498 21 6 3.3650 3.6342 3.2971 22 6 3.2272 3.1053 4.7476 23 1 2.4883 3.6654 5.3208 24 6 2.9133 1.5914 4.6891 25 6 4.3078 0.9266 4.6455 26 6 5.2887 2.1225 4.6838 27 1 6.2116 1.8804 5.2107 28 6 5.5506 2.5800 3.2397 29 8 4.5450 3.1753 5.3397 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8630 0.7138 -0.9262 36 1 3.8514 0.5767 0.8484 37 1 3.4760 2.4125 -2.5496 38 1 4.1857 4.0000 -2.9297 39 1 6.4592 3.0268 -2.7496 40 1 5.7496 1.4393 -2.3695 41 1 8.2917 0.6871 -4.9251 42 1 3.7813 4.6415 3.3094 43 1 2.3849 3.6500 2.8203 44 1 2.3679 1.2789 5.5796 45 1 2.3470 1.3524 3.7889 46 1 4.4323 0.3583 3.7238 47 1 4.4531 0.2848 5.5145 48 1 6.0803 3.5326 3.2490 49 1 6.1510 1.8315 2.7227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342866284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:18 Heat of formation + Delta-G solvation = -0.069685 kcal Electronic energy + Delta-G solvation = -30654.144982 eV Core-core repulsion = 26618.095410 eV Total energy + Delta-G solvation = -4036.049572 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.76704 -40.89798 -38.19655 -36.17493 -35.14054 -33.90400 -32.27745 -31.75268 -31.69502 -29.84938 -28.79109 -26.61422 -26.05480 -25.15445 -25.00915 -23.56921 -21.94696 -21.36548 -21.20721 -20.07090 -19.66888 -17.89960 -17.04292 -16.63072 -16.26969 -16.17776 -15.98961 -15.57205 -15.28287 -15.21360 -14.78585 -14.70841 -14.50373 -14.22046 -13.89464 -13.33754 -13.11154 -13.08339 -13.00812 -12.50898 -12.30348 -11.92999 -11.91945 -11.71718 -11.60676 -11.41093 -11.36176 -11.23836 -11.16260 -10.99057 -10.75470 -10.71434 -10.43586 -10.09287 -9.97513 -9.95436 -9.89569 -9.79699 -9.27434 -8.85995 -8.51768 -8.42741 -6.07252 -4.11698 1.92830 2.26618 3.15609 3.29976 3.34917 3.35049 3.36976 3.59613 3.90809 4.39442 4.40990 4.43852 4.48741 4.52980 4.62761 4.76128 4.85498 4.89317 5.00769 5.07378 5.10280 5.13349 5.15520 5.26620 5.28622 5.29056 5.32574 5.41865 5.42950 5.47294 5.61767 5.62971 5.64854 5.66972 5.82799 5.83614 5.92357 6.25003 6.26377 6.38594 6.41835 6.57011 6.60208 6.82518 6.86125 7.35101 7.51481 7.64534 7.89219 8.26400 8.93759 9.05751 9.53057 11.03797 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.003220 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.725430 B = 8693.012416 C = 9734.668791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.055 3.945 4 C 0.115 3.885 5 N -0.461 5.461 6 C 0.221 3.779 7 C -0.034 4.034 8 C 0.032 3.968 9 C -0.526 4.526 10 H 0.058 0.942 11 C 0.061 3.939 12 N -0.892 5.892 13 Si 0.895 3.105 14 H -0.275 1.275 15 H -0.287 1.287 16 H -0.276 1.276 17 N -0.295 5.295 18 N -0.307 5.307 19 C 0.319 3.681 20 N -0.454 5.454 21 C 0.041 3.959 22 C 0.075 3.925 23 H 0.120 0.880 24 C -0.135 4.135 25 C -0.137 4.137 26 C 0.075 3.925 27 H 0.121 0.879 28 C 0.039 3.961 29 O -0.367 6.367 30 H 0.040 0.960 31 H 0.044 0.956 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.026 0.974 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.065 0.935 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.064 0.936 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.497 -2.561 18.962 23.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.302 6.302 3 C -0.023 4.023 4 C -0.008 4.008 5 N -0.155 5.155 6 C -0.045 4.045 7 C -0.073 4.073 8 C -0.006 4.006 9 C -0.564 4.564 10 H 0.077 0.923 11 C -0.142 4.142 12 N -0.530 5.530 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.202 1.202 17 N -0.135 5.135 18 N -0.151 5.151 19 C -0.037 4.037 20 N -0.180 5.180 21 C -0.086 4.086 22 C 0.016 3.984 23 H 0.138 0.862 24 C -0.173 4.173 25 C -0.175 4.175 26 C 0.017 3.983 27 H 0.139 0.861 28 C -0.089 4.089 29 O -0.286 6.286 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.044 0.956 40 H 0.033 0.967 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.101 0.899 46 H 0.102 0.898 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.741 -1.759 19.194 23.105 hybrid contribution -0.474 -0.740 -1.266 1.541 sum -13.214 -2.499 17.929 22.412 Atomic orbital electron populations 1.22761 0.80390 1.02975 1.00117 1.87826 1.20142 1.26725 1.95490 1.22693 0.93112 0.85421 1.01097 1.21522 0.91818 0.80931 1.06578 1.46154 1.47305 1.15989 1.06060 1.25730 0.97792 0.87078 0.93938 1.20508 1.02594 1.02695 0.81549 1.19070 0.90564 0.95108 0.95851 1.21078 1.02177 1.39369 0.93778 0.92339 1.25002 0.95154 0.95526 0.98469 1.69957 1.05919 1.40713 1.36399 0.86614 0.77430 0.78588 0.85131 1.20086 1.21258 1.20175 1.74100 1.19212 1.20121 1.00051 1.74518 1.18276 1.15627 1.06655 1.22120 1.04074 0.90407 0.87085 1.58689 1.14543 1.48050 0.96672 1.23112 0.96733 0.95153 0.93651 1.23753 0.86228 0.96758 0.91613 0.86204 1.22805 0.97826 0.94086 1.02600 1.22839 0.94131 0.97613 1.02886 1.23484 0.96576 0.87176 0.91061 0.86121 1.22929 0.89055 1.02616 0.94278 1.89283 1.22904 1.54022 1.62344 0.94110 0.93773 0.89274 0.92853 0.92447 0.86994 0.87699 0.91147 0.89097 0.95573 0.96698 0.92771 0.91715 0.89953 0.91200 0.89948 0.89758 0.91142 0.91741 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -4.51 10.70 -35.23 -0.38 -4.89 16 3 C 0.05 0.64 6.26 37.16 0.23 0.87 16 4 C 0.12 1.57 6.27 -4.04 -0.03 1.54 16 5 N -0.46 -7.54 2.81 -114.08 -0.32 -7.86 16 6 C 0.22 4.29 7.32 -154.02 -1.13 3.16 16 7 C -0.03 -0.67 5.35 -27.88 -0.15 -0.82 16 8 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 9 C -0.53 -14.22 9.11 -34.44 -0.31 -14.53 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16 13 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 17 N -0.30 -6.28 12.18 32.99 0.40 -5.88 16 18 N -0.31 -6.00 12.12 30.31 0.37 -5.63 16 19 C 0.32 5.19 6.47 -318.87 -2.06 3.13 16 20 N -0.45 -5.72 3.81 -172.56 -0.66 -6.38 16 21 C 0.04 0.46 5.10 -2.68 -0.01 0.45 16 22 C 0.07 0.68 4.76 -24.77 -0.12 0.56 16 23 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 24 C -0.14 -1.07 6.26 -25.02 -0.16 -1.23 16 25 C -0.14 -1.13 6.25 -25.01 -0.16 -1.29 16 26 C 0.08 0.72 4.69 -25.44 -0.12 0.60 16 27 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 28 C 0.04 0.47 5.04 -3.36 -0.02 0.45 16 29 O -0.37 -4.10 11.23 -35.23 -0.40 -4.49 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.11 1.66 7.85 -51.93 -0.41 1.26 16 36 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 37 H 0.07 1.26 7.91 -51.93 -0.41 0.85 16 38 H 0.09 1.79 8.14 -51.93 -0.42 1.37 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.06 0.85 8.07 -51.93 -0.42 0.43 16 43 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.68 7.87 -51.93 -0.41 0.27 16 46 H 0.08 0.74 7.84 -51.93 -0.41 0.34 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 49 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -32.76 397.14 -10.79 -43.55 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -8.36 Total: -1.46 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.15 Total: -3.44 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.53 Total: -51.31 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.77 Total: -9.38 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.76 -10.79 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342866284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.479 kcal (2) G-P(sol) polarization free energy of solvation -32.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds