Wall clock time and date at job start Tue Mar 31 2020 19:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99811 * 2 1 4 4 C 1.52999 * 109.47035 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.47151 * 184.44105 * 4 3 2 6 6 C 1.36732 * 127.13625 * 269.35909 * 5 4 3 7 7 C 1.50701 * 126.35158 * 359.97438 * 6 5 4 8 8 C 1.53002 * 109.46587 * 270.28120 * 7 6 5 9 9 C 1.50696 * 109.47085 * 179.97438 * 8 7 6 10 10 H 1.08001 * 120.00436 * 359.97438 * 9 8 7 11 11 C 1.37886 * 119.99998 * 180.02562 * 9 8 7 12 12 N 1.31509 * 119.99835 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99688 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47426 * 60.00051 * 13 11 9 15 15 H 1.48505 * 109.46942 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47165 * 299.99317 * 13 11 9 17 17 N 1.30298 * 107.30580 * 180.22595 * 6 5 4 18 18 N 1.28530 * 110.05171 * 359.77857 * 17 6 5 19 19 C 1.31222 * 109.85913 * 0.02562 * 18 17 6 20 20 N 1.38581 * 126.47461 * 179.97438 * 19 18 17 21 21 C 1.47053 * 111.00085 * 60.50928 * 20 19 18 22 22 C 1.55007 * 108.79574 * 181.56950 * 21 20 19 23 23 H 1.09003 * 112.14900 * 186.24659 * 22 21 20 24 24 C 1.54712 * 108.45271 * 311.29133 * 22 21 20 25 25 C 1.54547 * 103.82253 * 87.79317 * 24 22 21 26 26 C 1.54719 * 103.82254 * 0.02562 * 25 24 22 27 27 H 1.08990 * 112.16139 * 147.18546 * 26 25 24 28 28 C 1.47052 * 110.99691 * 296.25332 * 20 19 18 29 29 O 1.44649 * 106.58965 * 63.12156 * 22 21 20 30 30 H 1.08997 * 109.47403 * 300.00028 * 1 2 3 31 31 H 1.08999 * 109.47168 * 60.00504 * 1 2 3 32 32 H 1.09001 * 109.46624 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47418 * 59.99997 * 3 2 1 34 34 H 1.08998 * 109.47200 * 299.99636 * 3 2 1 35 35 H 1.09000 * 109.47125 * 64.44039 * 4 3 2 36 36 H 1.09002 * 109.47146 * 304.44554 * 4 3 2 37 37 H 1.09000 * 109.47125 * 30.27617 * 7 6 5 38 38 H 1.09001 * 109.47380 * 150.28289 * 7 6 5 39 39 H 1.09000 * 109.46978 * 299.99588 * 8 7 6 40 40 H 1.08998 * 109.47391 * 59.99298 * 8 7 6 41 41 H 0.97002 * 119.99561 * 179.97438 * 12 11 9 42 42 H 1.09004 * 109.56785 * 301.61553 * 21 20 19 43 43 H 1.09002 * 109.56939 * 61.85213 * 21 20 19 44 44 H 1.09000 * 110.56006 * 206.37865 * 24 22 21 45 45 H 1.09002 * 110.55941 * 329.20755 * 24 22 21 46 46 H 1.08998 * 110.56124 * 241.41380 * 25 24 22 47 47 H 1.09006 * 110.55558 * 118.58605 * 25 24 22 48 48 H 1.08994 * 109.57400 * 58.38271 * 28 20 19 49 49 H 1.09000 * 109.56434 * 298.02171 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1309 2.5190 0.1076 6 6 4.4847 3.3498 -0.9191 7 6 4.3353 3.0641 -2.3913 8 6 5.5999 2.3751 -2.9079 9 6 5.4504 2.0889 -4.3799 10 1 4.5438 2.3699 -4.8953 11 6 6.4705 1.4673 -5.0685 12 7 7.5742 1.1247 -4.4408 13 14 6.2853 1.1132 -6.8932 14 1 6.0822 2.3882 -7.6268 15 1 7.5127 0.4443 -7.3947 16 1 5.1143 0.2259 -7.1089 17 7 4.9800 4.4320 -0.3889 18 7 4.9590 4.3441 0.8932 19 6 4.4455 3.1912 1.2526 20 7 4.2618 2.7398 2.5498 21 6 3.3650 3.6342 3.2971 22 6 3.2272 3.1053 4.7476 23 1 2.4883 3.6654 5.3208 24 6 2.9133 1.5914 4.6891 25 6 4.3078 0.9266 4.6455 26 6 5.2887 2.1225 4.6838 27 1 6.2116 1.8804 5.2107 28 6 5.5506 2.5800 3.2397 29 8 4.5450 3.1753 5.3397 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8630 0.7138 -0.9262 36 1 3.8514 0.5767 0.8484 37 1 3.4760 2.4125 -2.5496 38 1 4.1857 4.0000 -2.9297 39 1 6.4592 3.0268 -2.7496 40 1 5.7496 1.4393 -2.3695 41 1 8.2917 0.6871 -4.9251 42 1 3.7813 4.6415 3.3094 43 1 2.3849 3.6500 2.8203 44 1 2.3679 1.2789 5.5796 45 1 2.3470 1.3524 3.7889 46 1 4.4323 0.3583 3.7238 47 1 4.4531 0.2848 5.5145 48 1 6.0803 3.5326 3.2490 49 1 6.1510 1.8315 2.7227 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342866284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:17 Heat of formation + Delta-G solvation = -19.483658 kcal Electronic energy + Delta-G solvation = -30654.986835 eV Core-core repulsion = 26618.095410 eV Total energy + Delta-G solvation = -4036.891425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.18034 -41.75858 -39.08107 -37.26490 -36.53264 -35.69927 -33.67559 -32.90722 -32.57614 -30.94048 -30.37640 -27.65019 -27.18728 -26.68974 -25.85327 -24.69584 -23.71476 -22.47760 -22.05794 -21.54321 -20.61912 -18.94833 -18.57177 -18.10169 -17.52492 -17.12606 -16.92443 -16.54558 -16.50526 -16.20336 -16.18402 -15.70551 -15.69334 -15.26692 -15.19327 -14.88859 -14.42128 -14.22590 -13.89141 -13.84776 -13.46034 -13.31132 -12.86900 -12.84546 -12.76126 -12.70742 -12.59119 -12.52049 -12.30277 -12.21442 -12.02407 -11.94088 -11.81943 -11.61085 -11.40785 -11.33938 -11.23831 -10.81459 -10.75801 -10.56741 -10.07344 -10.00881 -8.20614 -6.33017 0.55252 0.99982 1.43384 1.46504 1.53874 1.65026 2.33349 2.41975 2.84843 2.91342 3.13931 3.37517 3.54340 3.61751 3.65247 3.76581 3.78531 3.80297 3.93453 3.99392 4.06054 4.13071 4.22933 4.35318 4.37355 4.46794 4.54099 4.54655 4.56132 4.58971 4.63273 4.67977 4.73371 4.76371 4.83135 4.86029 4.89661 5.04321 5.08440 5.18490 5.28602 5.40320 5.44047 5.47249 5.55972 5.77174 5.78816 6.00696 6.09284 6.15258 6.82288 7.37098 7.58320 8.91294 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.013389 B = 0.003220 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.725430 B = 8693.012416 C = 9734.668791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.066 3.934 4 C 0.113 3.887 5 N -0.455 5.455 6 C 0.209 3.791 7 C -0.016 4.016 8 C 0.043 3.957 9 C -0.540 4.540 10 H 0.073 0.927 11 C 0.002 3.998 12 N -0.934 5.934 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.288 1.288 16 H -0.261 1.261 17 N -0.329 5.329 18 N -0.342 5.342 19 C 0.340 3.660 20 N -0.440 5.440 21 C 0.039 3.961 22 C 0.078 3.922 23 H 0.145 0.855 24 C -0.130 4.130 25 C -0.134 4.134 26 C 0.079 3.921 27 H 0.139 0.861 28 C 0.037 3.963 29 O -0.385 6.385 30 H 0.056 0.944 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.092 0.908 39 H -0.016 1.016 40 H -0.006 1.006 41 H 0.263 0.737 42 H 0.041 0.959 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.039 0.961 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.012 -3.971 19.819 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.011 4.011 4 C -0.009 4.009 5 N -0.148 5.148 6 C -0.060 4.060 7 C -0.056 4.056 8 C 0.005 3.995 9 C -0.578 4.578 10 H 0.091 0.909 11 C -0.196 4.196 12 N -0.573 5.573 13 Si 0.791 3.209 14 H -0.192 1.192 15 H -0.213 1.213 16 H -0.186 1.186 17 N -0.168 5.168 18 N -0.185 5.185 19 C -0.017 4.017 20 N -0.167 5.167 21 C -0.088 4.088 22 C 0.021 3.979 23 H 0.163 0.837 24 C -0.168 4.168 25 C -0.172 4.172 26 C 0.021 3.979 27 H 0.157 0.843 28 C -0.091 4.091 29 O -0.304 6.304 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.137 0.863 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.002 0.998 40 H 0.013 0.987 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.057 0.943 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.290 -3.172 20.059 25.421 hybrid contribution 0.309 -0.318 -1.427 1.494 sum -14.981 -3.490 18.633 24.162 Atomic orbital electron populations 1.22993 0.78512 1.04346 1.01052 1.87800 1.22151 1.26386 1.95632 1.22498 0.91351 0.85803 1.01496 1.21685 0.93448 0.79392 1.06422 1.46222 1.46804 1.16464 1.05329 1.25447 0.98763 0.87606 0.94137 1.20198 1.00754 1.02636 0.82030 1.18833 0.91525 0.93651 0.95522 1.21547 1.02680 1.38861 0.94735 0.90894 1.25979 0.94718 0.95295 1.03589 1.70111 1.06932 1.41822 1.38481 0.85470 0.77708 0.78792 0.78915 1.19220 1.21317 1.18554 1.73996 1.20102 1.21603 1.01125 1.74451 1.20303 1.17725 1.06053 1.22519 1.01449 0.89305 0.88430 1.58992 1.14962 1.47614 0.95117 1.23244 0.96462 0.93803 0.95336 1.23950 0.86028 0.98072 0.89894 0.83745 1.22812 0.97684 0.92709 1.03604 1.22847 0.93839 0.97028 1.03474 1.23595 0.97850 0.87452 0.88989 0.84341 1.23000 0.88512 1.01324 0.96257 1.89280 1.23954 1.54681 1.62440 0.92540 0.93465 0.87768 0.91707 0.92759 0.88457 0.86346 0.88682 0.88915 0.99766 0.98725 0.92792 0.94090 0.88817 0.89150 0.89980 0.90322 0.89303 0.94282 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.40 -8.59 10.70 -148.98 -1.59 -10.18 16 3 C 0.07 1.45 6.26 71.98 0.45 1.90 16 4 C 0.11 3.00 6.27 86.38 0.54 3.55 16 5 N -0.45 -15.01 2.81 -514.84 -1.45 -16.45 16 6 C 0.21 8.32 7.32 137.64 1.01 9.33 16 7 C -0.02 -0.67 5.35 29.85 0.16 -0.51 16 8 C 0.04 2.24 4.95 29.85 0.15 2.38 16 9 C -0.54 -29.50 9.11 25.60 0.23 -29.26 16 10 H 0.07 3.69 7.74 -2.91 -0.02 3.66 16 11 C 0.00 0.13 5.46 84.66 0.46 0.60 16 12 N -0.93 -56.50 13.29 21.45 0.28 -56.21 16 13 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 14 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 15 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 16 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 17 N -0.33 -14.55 12.18 -49.54 -0.60 -15.16 16 18 N -0.34 -13.87 12.12 -58.00 -0.70 -14.57 16 19 C 0.34 11.20 6.47 260.11 1.68 12.88 16 20 N -0.44 -10.88 3.81 -699.85 -2.67 -13.55 16 21 C 0.04 0.83 5.10 86.96 0.44 1.27 16 22 C 0.08 1.23 4.76 31.86 0.15 1.38 16 23 H 0.15 1.58 8.14 -2.39 -0.02 1.56 16 24 C -0.13 -1.63 6.26 31.70 0.20 -1.43 16 25 C -0.13 -1.85 6.25 31.71 0.20 -1.65 16 26 C 0.08 1.40 4.69 31.43 0.15 1.54 16 27 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 28 C 0.04 0.88 5.04 86.52 0.44 1.32 16 29 O -0.38 -7.92 11.23 -148.98 -1.67 -9.59 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 2.91 7.85 -2.39 -0.02 2.89 16 36 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.09 3.35 7.91 -2.39 -0.02 3.33 16 38 H 0.09 3.71 8.14 -2.39 -0.02 3.69 16 39 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 40 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 41 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.04 1.08 8.07 -2.38 -0.02 1.06 16 43 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 1.07 7.87 -2.39 -0.02 1.05 16 46 H 0.08 1.20 7.84 -2.39 -0.02 1.18 16 47 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 48 H 0.04 1.14 8.12 -2.39 -0.02 1.12 16 49 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -73.19 397.14 2.06 -71.14 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 0.92 Total: 14.52 kcal Atomic # 6 Polarization: -2.59 SS G_CDS: 7.51 Total: 4.92 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -5.13 Total: -115.93 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -3.27 Total: -19.77 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -73.19 2.06 -71.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342866284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.652 kcal (2) G-P(sol) polarization free energy of solvation -73.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds