Wall clock time and date at job start Tue Mar 31 2020 19:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99883 * 2 1 4 4 C 1.53002 * 109.46813 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46674 * 180.02562 * 4 3 2 6 6 C 1.36739 * 127.13383 * 270.02497 * 5 4 3 7 7 C 1.50697 * 126.35295 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.47063 * 90.00151 * 7 6 5 9 9 C 1.50696 * 109.47096 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00247 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99878 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00190 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00158 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47113 * 59.99823 * 13 11 9 15 15 H 1.48499 * 109.47013 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46847 * 299.99640 * 13 11 9 17 17 N 1.30297 * 107.30186 * 179.97438 * 6 5 4 18 18 N 1.28520 * 110.05470 * 359.72628 * 17 6 5 19 19 C 1.31223 * 109.86116 * 0.45119 * 18 17 6 20 20 N 1.38577 * 126.47388 * 179.82235 * 19 18 17 21 21 C 1.48709 * 111.04338 * 242.23444 * 20 19 18 22 22 C 1.55187 * 103.41594 * 159.08966 * 21 20 19 23 23 C 1.53557 * 102.61031 * 323.52799 * 22 21 20 24 24 C 1.52897 * 115.62188 * 151.59643 * 23 22 21 25 25 O 1.44402 * 85.14971 * 95.02754 * 24 23 22 26 26 C 1.44404 * 93.54135 * 23.37752 * 25 24 23 27 27 C 1.48213 * 111.00093 * 359.69097 * 20 19 18 28 28 H 1.08993 * 109.47320 * 59.99721 * 1 2 3 29 29 H 1.09005 * 109.46707 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46811 * 299.99562 * 1 2 3 31 31 H 1.08995 * 109.47128 * 60.00545 * 3 2 1 32 32 H 1.09002 * 109.46990 * 300.00036 * 3 2 1 33 33 H 1.08995 * 109.47061 * 60.00219 * 4 3 2 34 34 H 1.08995 * 109.47041 * 300.00009 * 4 3 2 35 35 H 1.08998 * 109.47785 * 210.00287 * 7 6 5 36 36 H 1.09008 * 109.46844 * 330.00483 * 7 6 5 37 37 H 1.09007 * 109.46789 * 300.00451 * 8 7 6 38 38 H 1.09001 * 109.47178 * 60.00095 * 8 7 6 39 39 H 0.96997 * 120.00219 * 180.02562 * 12 11 9 40 40 H 1.09001 * 110.59922 * 40.61748 * 21 20 19 41 41 H 1.08994 * 110.78235 * 277.65327 * 21 20 19 42 42 H 1.09002 * 110.77924 * 205.24515 * 22 21 20 43 43 H 1.09007 * 110.94288 * 81.88168 * 22 21 20 44 44 H 1.09004 * 113.92098 * 209.07895 * 24 23 22 45 45 H 1.08993 * 113.92774 * 340.97350 * 24 23 22 46 46 H 1.08994 * 113.92761 * 222.57117 * 26 25 24 47 47 H 1.09008 * 113.92468 * 90.66867 * 26 25 24 48 48 H 1.09002 * 110.03338 * 95.04163 * 27 20 19 49 49 H 1.08995 * 110.03184 * 333.65946 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5231 0.0000 6 6 4.4662 3.2780 -1.0898 7 6 4.2904 2.8881 -2.5348 8 6 2.9132 3.3433 -3.0219 9 6 2.7372 2.9529 -4.4667 10 1 3.5285 2.4325 -4.9858 11 6 1.5662 3.2609 -5.1263 12 7 0.6028 3.8951 -4.4944 13 14 1.3476 2.7763 -6.9171 14 1 1.4553 1.3010 -7.0473 15 1 0.0111 3.2182 -7.3899 16 1 2.4025 3.4240 -7.7375 17 7 4.9645 4.3977 -0.6472 18 7 4.9619 4.4037 0.6379 19 6 4.4666 3.2750 1.0881 20 7 4.3083 2.9168 2.4174 21 6 5.1231 1.7175 2.7479 22 6 5.2641 1.7922 4.2915 23 6 5.3863 3.3019 4.5444 24 6 4.8783 3.7881 5.9020 25 8 6.2546 3.6683 6.3224 26 6 6.7692 3.7892 4.9785 27 6 4.7873 3.9922 3.3179 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6436 0.8891 35 1 5.0643 3.3645 -3.1365 36 1 4.3702 1.8052 -2.6312 37 1 2.1392 2.8669 -2.4202 38 1 2.8334 4.4261 -2.9255 39 1 -0.2211 4.1114 -4.9584 40 1 6.1010 1.7745 2.2696 41 1 4.6052 0.8049 2.4531 42 1 6.1617 1.2705 4.6236 43 1 4.3793 1.3880 4.7836 44 1 4.5064 4.8127 5.8937 45 1 4.2027 3.0906 6.3969 46 1 7.5754 3.0924 4.7495 47 1 6.9903 4.8141 4.6804 48 1 3.9537 4.6277 3.6170 49 1 5.5492 4.5881 2.8155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342868788.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:05 Heat of formation + Delta-G solvation = 36.051113 kcal Electronic energy + Delta-G solvation = -30163.282633 eV Core-core repulsion = 26128.799376 eV Total energy + Delta-G solvation = -4034.483257 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.78592 -41.34038 -38.05133 -37.93875 -35.15554 -34.06840 -32.49495 -31.31064 -29.90439 -29.70546 -28.20971 -27.02909 -26.32775 -25.31487 -25.03970 -23.62981 -22.58680 -21.93477 -20.67596 -19.96940 -19.19956 -17.52973 -16.83895 -16.70044 -16.37342 -16.14840 -16.08334 -15.97730 -15.55103 -15.40901 -15.20871 -14.75983 -14.53221 -13.84682 -13.78152 -13.41575 -13.33657 -13.08223 -12.78195 -12.43215 -12.34165 -12.26815 -12.17266 -11.96725 -11.49187 -11.39162 -11.26382 -11.19206 -11.00245 -10.94706 -10.85033 -10.73012 -10.43723 -10.10159 -10.00211 -9.96854 -9.81387 -9.62885 -9.41897 -9.25551 -8.43464 -8.05173 -6.08942 -4.12948 1.97157 2.30295 3.15535 3.27532 3.28766 3.33663 3.35885 3.52415 3.75129 3.94451 4.03143 4.22454 4.38532 4.50107 4.69665 4.81522 4.88844 4.96873 4.97819 5.04292 5.06697 5.14607 5.20590 5.26175 5.27193 5.35032 5.36857 5.44332 5.47812 5.51245 5.53422 5.58302 5.63476 5.69247 5.72179 5.75203 5.77761 5.83680 6.08901 6.29824 6.37935 6.43613 6.60127 6.83639 7.06076 7.31545 7.51690 7.63967 7.88040 8.25439 8.92466 9.10135 9.51687 11.02032 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002860 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.484609 B = 9789.227000 C =10816.727673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.390 6.390 3 C 0.045 3.955 4 C 0.116 3.884 5 N -0.475 5.475 6 C 0.217 3.783 7 C -0.033 4.033 8 C 0.033 3.967 9 C -0.524 4.524 10 H 0.059 0.941 11 C 0.060 3.940 12 N -0.892 5.892 13 Si 0.894 3.106 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.275 1.275 17 N -0.292 5.292 18 N -0.321 5.321 19 C 0.328 3.672 20 N -0.431 5.431 21 C 0.033 3.967 22 C -0.094 4.094 23 C -0.141 4.141 24 C 0.053 3.947 25 O -0.381 6.381 26 C 0.049 3.951 27 C 0.057 3.943 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.015 0.985 38 H 0.025 0.975 39 H 0.262 0.738 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.092 0.908 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.270 -7.398 19.235 21.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.308 6.308 3 C -0.033 4.033 4 C -0.008 4.008 5 N -0.171 5.171 6 C -0.051 4.051 7 C -0.073 4.073 8 C -0.006 4.006 9 C -0.562 4.562 10 H 0.077 0.923 11 C -0.141 4.141 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.201 1.201 17 N -0.130 5.130 18 N -0.165 5.165 19 C -0.028 4.028 20 N -0.155 5.155 21 C -0.094 4.094 22 C -0.132 4.132 23 C -0.142 4.142 24 C -0.023 4.023 25 O -0.300 6.300 26 C -0.028 4.028 27 C -0.070 4.070 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.033 0.967 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.112 0.888 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.376 -6.249 19.547 21.489 hybrid contribution -0.601 -1.066 -1.290 1.778 sum 5.774 -7.315 18.257 20.498 Atomic orbital electron populations 1.22755 0.80113 1.02655 1.00663 1.87713 1.20488 1.26929 1.95670 1.22845 0.92216 0.85567 1.02671 1.21572 0.93159 0.80550 1.05490 1.46034 1.48767 1.16375 1.05955 1.25639 0.98506 0.88517 0.92404 1.20489 1.03523 1.00789 0.82496 1.19111 0.88008 0.97474 0.95964 1.21089 1.01261 1.37942 0.95957 0.92320 1.24996 0.95923 0.94955 0.98274 1.69955 1.06128 1.40149 1.36870 0.86622 0.77336 0.78906 0.84960 1.20179 1.21282 1.20054 1.74020 1.19784 1.17364 1.01833 1.74434 1.20468 1.17295 1.04261 1.22596 1.01882 0.91014 0.87344 1.61642 1.50464 1.06330 0.97098 1.23529 0.96353 0.93224 0.96256 1.22228 1.03561 0.93128 0.94312 1.23891 0.96748 0.97667 0.95893 1.23940 0.85671 1.01448 0.91284 1.89735 1.19302 1.94107 1.26853 1.23995 0.95636 1.01566 0.81558 1.22824 1.00905 0.92718 0.90596 0.93114 0.89530 0.94181 0.92601 0.90605 0.87583 0.88500 0.89138 0.91133 0.96678 0.95627 0.92808 0.92383 0.88877 0.89628 0.89368 0.89588 0.88764 0.88980 0.89475 0.88802 0.89611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.39 -5.60 10.70 -35.23 -0.38 -5.98 16 3 C 0.04 0.67 6.26 37.16 0.23 0.90 16 4 C 0.12 1.58 6.31 -4.04 -0.03 1.55 16 5 N -0.48 -7.79 2.81 -114.09 -0.32 -8.11 16 6 C 0.22 4.20 7.32 -154.01 -1.13 3.07 16 7 C -0.03 -0.66 5.53 -27.88 -0.15 -0.82 16 8 C 0.03 0.81 4.95 -27.88 -0.14 0.67 16 9 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 13 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 15 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 17 N -0.29 -6.17 12.18 32.99 0.40 -5.77 16 18 N -0.32 -6.12 10.70 30.31 0.32 -5.80 16 19 C 0.33 5.31 7.04 -318.88 -2.24 3.07 16 20 N -0.43 -5.36 5.33 -170.63 -0.91 -6.27 16 21 C 0.03 0.32 5.93 -1.66 -0.01 0.31 16 22 C -0.09 -0.70 6.46 -25.28 -0.16 -0.86 16 23 C -0.14 -1.16 1.17 -154.34 -0.18 -1.34 16 24 C 0.05 0.41 8.42 37.08 0.31 0.72 16 25 O -0.38 -3.75 12.46 -35.23 -0.44 -4.19 16 26 C 0.05 0.40 8.35 37.09 0.31 0.71 16 27 C 0.06 0.61 6.03 -3.12 -0.02 0.59 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.08 1.39 6.23 -51.93 -0.32 1.06 16 33 H 0.11 1.40 7.25 -51.93 -0.38 1.03 16 34 H 0.10 1.08 5.40 -51.93 -0.28 0.80 16 35 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 36 H 0.07 1.26 7.27 -51.92 -0.38 0.89 16 37 H 0.02 0.39 6.23 -51.93 -0.32 0.07 16 38 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 40 H 0.06 0.59 7.99 -51.93 -0.41 0.17 16 41 H 0.09 0.80 6.05 -51.93 -0.31 0.49 16 42 H 0.09 0.55 7.87 -51.93 -0.41 0.14 16 43 H 0.09 0.59 8.05 -51.93 -0.42 0.18 16 44 H 0.09 0.58 8.10 -51.93 -0.42 0.16 16 45 H 0.09 0.60 8.04 -51.93 -0.42 0.19 16 46 H 0.09 0.65 7.99 -51.93 -0.42 0.24 16 47 H 0.09 0.66 8.12 -51.92 -0.42 0.24 16 48 H 0.09 0.99 7.91 -51.93 -0.41 0.58 16 49 H 0.09 1.06 6.65 -51.93 -0.35 0.72 16 LS Contribution 391.74 15.07 5.90 5.90 Total: -1.00 -32.85 391.74 -9.95 -42.81 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.75 Total: -0.52 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.51 Total: -2.72 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: 0.23 Total: -51.26 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.82 Total: -10.17 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.85 -9.95 -42.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342868788.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.858 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds