Wall clock time and date at job start Tue Mar 31 2020 19:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99883 * 2 1 4 4 C 1.53002 * 109.46813 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46674 * 180.02562 * 4 3 2 6 6 C 1.36739 * 127.13383 * 270.02497 * 5 4 3 7 7 C 1.50697 * 126.35295 * 0.02562 * 6 5 4 8 8 C 1.53004 * 109.47063 * 90.00151 * 7 6 5 9 9 C 1.50696 * 109.47096 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00247 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99878 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00190 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00158 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47113 * 59.99823 * 13 11 9 15 15 H 1.48499 * 109.47013 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46847 * 299.99640 * 13 11 9 17 17 N 1.30297 * 107.30186 * 179.97438 * 6 5 4 18 18 N 1.28520 * 110.05470 * 359.72628 * 17 6 5 19 19 C 1.31223 * 109.86116 * 0.45119 * 18 17 6 20 20 N 1.38577 * 126.47388 * 179.82235 * 19 18 17 21 21 C 1.48709 * 111.04338 * 242.23444 * 20 19 18 22 22 C 1.55187 * 103.41594 * 159.08966 * 21 20 19 23 23 C 1.53557 * 102.61031 * 323.52799 * 22 21 20 24 24 C 1.52897 * 115.62188 * 151.59643 * 23 22 21 25 25 O 1.44402 * 85.14971 * 95.02754 * 24 23 22 26 26 C 1.44404 * 93.54135 * 23.37752 * 25 24 23 27 27 C 1.48213 * 111.00093 * 359.69097 * 20 19 18 28 28 H 1.08993 * 109.47320 * 59.99721 * 1 2 3 29 29 H 1.09005 * 109.46707 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46811 * 299.99562 * 1 2 3 31 31 H 1.08995 * 109.47128 * 60.00545 * 3 2 1 32 32 H 1.09002 * 109.46990 * 300.00036 * 3 2 1 33 33 H 1.08995 * 109.47061 * 60.00219 * 4 3 2 34 34 H 1.08995 * 109.47041 * 300.00009 * 4 3 2 35 35 H 1.08998 * 109.47785 * 210.00287 * 7 6 5 36 36 H 1.09008 * 109.46844 * 330.00483 * 7 6 5 37 37 H 1.09007 * 109.46789 * 300.00451 * 8 7 6 38 38 H 1.09001 * 109.47178 * 60.00095 * 8 7 6 39 39 H 0.96997 * 120.00219 * 180.02562 * 12 11 9 40 40 H 1.09001 * 110.59922 * 40.61748 * 21 20 19 41 41 H 1.08994 * 110.78235 * 277.65327 * 21 20 19 42 42 H 1.09002 * 110.77924 * 205.24515 * 22 21 20 43 43 H 1.09007 * 110.94288 * 81.88168 * 22 21 20 44 44 H 1.09004 * 113.92098 * 209.07895 * 24 23 22 45 45 H 1.08993 * 113.92774 * 340.97350 * 24 23 22 46 46 H 1.08994 * 113.92761 * 222.57117 * 26 25 24 47 47 H 1.09008 * 113.92468 * 90.66867 * 26 25 24 48 48 H 1.09002 * 110.03338 * 95.04163 * 27 20 19 49 49 H 1.08995 * 110.03184 * 333.65946 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 4.1313 2.5231 0.0000 6 6 4.4662 3.2780 -1.0898 7 6 4.2904 2.8881 -2.5348 8 6 2.9132 3.3433 -3.0219 9 6 2.7372 2.9529 -4.4667 10 1 3.5285 2.4325 -4.9858 11 6 1.5662 3.2609 -5.1263 12 7 0.6028 3.8951 -4.4944 13 14 1.3476 2.7763 -6.9171 14 1 1.4553 1.3010 -7.0473 15 1 0.0111 3.2182 -7.3899 16 1 2.4025 3.4240 -7.7375 17 7 4.9645 4.3977 -0.6472 18 7 4.9619 4.4037 0.6379 19 6 4.4666 3.2750 1.0881 20 7 4.3083 2.9168 2.4174 21 6 5.1231 1.7175 2.7479 22 6 5.2641 1.7922 4.2915 23 6 5.3863 3.3019 4.5444 24 6 4.8783 3.7881 5.9020 25 8 6.2546 3.6683 6.3224 26 6 6.7692 3.7892 4.9785 27 6 4.7873 3.9922 3.3179 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6436 0.8891 35 1 5.0643 3.3645 -3.1365 36 1 4.3702 1.8052 -2.6312 37 1 2.1392 2.8669 -2.4202 38 1 2.8334 4.4261 -2.9255 39 1 -0.2211 4.1114 -4.9584 40 1 6.1010 1.7745 2.2696 41 1 4.6052 0.8049 2.4531 42 1 6.1617 1.2705 4.6236 43 1 4.3793 1.3880 4.7836 44 1 4.5064 4.8127 5.8937 45 1 4.2027 3.0906 6.3969 46 1 7.5754 3.0924 4.7495 47 1 6.9903 4.8141 4.6804 48 1 3.9537 4.6277 3.6170 49 1 5.5492 4.5881 2.8155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342868788.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:03 Heat of formation + Delta-G solvation = 15.522897 kcal Electronic energy + Delta-G solvation = -30164.172803 eV Core-core repulsion = 26128.799376 eV Total energy + Delta-G solvation = -4035.373427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.14613 -42.05854 -39.12285 -38.91888 -36.56123 -35.81593 -33.98742 -32.68241 -30.97301 -30.68104 -29.68180 -27.63057 -27.40277 -27.11279 -25.89286 -24.80759 -23.78225 -23.45660 -21.88526 -21.41670 -19.94511 -18.79104 -18.37378 -17.81221 -17.58272 -17.20767 -17.11812 -16.75888 -16.64953 -16.50444 -16.48193 -16.08925 -15.78798 -15.14979 -14.95583 -14.76965 -14.47464 -14.24690 -14.08004 -13.68279 -13.43973 -13.27924 -13.15184 -12.90770 -12.88181 -12.78954 -12.63252 -12.54729 -12.40037 -12.32424 -11.99594 -11.85012 -11.62645 -11.54109 -11.50734 -11.35308 -11.24403 -10.83736 -10.71998 -10.62409 -10.54165 -9.37298 -8.20772 -6.32630 0.63277 1.06343 1.42464 1.45335 1.52676 1.72095 2.41199 2.43450 2.65992 2.82142 3.10842 3.13439 3.29673 3.39365 3.46820 3.52669 3.80263 3.91354 3.96698 4.04404 4.12032 4.14255 4.27712 4.36749 4.38542 4.43205 4.47119 4.50652 4.54208 4.56284 4.64533 4.68959 4.73244 4.78909 4.81574 4.84427 4.89827 4.93651 5.00771 5.01455 5.08313 5.15006 5.37031 5.44856 5.46781 5.59360 5.77999 5.93453 6.07003 6.16069 6.82574 7.37063 7.67303 8.90890 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016950 B = 0.002860 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.484609 B = 9789.227000 C =10816.727673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.393 6.393 3 C 0.055 3.945 4 C 0.115 3.885 5 N -0.472 5.472 6 C 0.202 3.798 7 C -0.018 4.018 8 C 0.044 3.956 9 C -0.539 4.539 10 H 0.072 0.928 11 C 0.003 3.997 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.262 1.262 15 H -0.287 1.287 16 H -0.267 1.267 17 N -0.326 5.326 18 N -0.353 5.353 19 C 0.349 3.651 20 N -0.433 5.433 21 C 0.031 3.969 22 C -0.085 4.085 23 C -0.134 4.134 24 C 0.055 3.945 25 O -0.401 6.401 26 C 0.048 3.952 27 C 0.056 3.944 28 H 0.029 0.971 29 H 0.114 0.886 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.091 0.909 36 H 0.095 0.905 37 H -0.002 1.002 38 H -0.018 1.018 39 H 0.263 0.737 40 H 0.054 0.946 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.087 0.913 48 H 0.093 0.907 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.803 -9.956 20.356 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.311 6.311 3 C -0.023 4.023 4 C -0.007 4.007 5 N -0.168 5.168 6 C -0.067 4.067 7 C -0.057 4.057 8 C 0.005 3.995 9 C -0.577 4.577 10 H 0.090 0.910 11 C -0.195 4.195 12 N -0.573 5.573 13 Si 0.789 3.211 14 H -0.186 1.186 15 H -0.213 1.213 16 H -0.192 1.192 17 N -0.164 5.164 18 N -0.197 5.197 19 C -0.008 4.008 20 N -0.158 5.158 21 C -0.095 4.095 22 C -0.123 4.123 23 C -0.135 4.135 24 C -0.022 4.022 25 O -0.320 6.320 26 C -0.029 4.029 27 C -0.071 4.071 28 H 0.048 0.952 29 H 0.133 0.867 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.053 0.947 33 H 0.131 0.869 34 H 0.148 0.852 35 H 0.109 0.891 36 H 0.113 0.887 37 H 0.016 0.984 38 H 0.000 1.000 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.129 0.871 46 H 0.122 0.878 47 H 0.105 0.895 48 H 0.111 0.889 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.924 -8.827 20.685 23.531 hybrid contribution -0.825 -0.261 -1.501 1.732 sum 6.099 -9.088 19.184 22.087 Atomic orbital electron populations 1.22950 0.78988 1.04431 1.00355 1.87703 1.21712 1.26102 1.95581 1.22621 0.93246 0.85717 1.00673 1.21803 0.92004 0.79376 1.07525 1.46075 1.48467 1.17067 1.05169 1.25333 0.99661 0.88950 0.92737 1.20181 1.00331 1.02079 0.83134 1.18872 0.90588 0.94469 0.95526 1.21555 1.01603 1.37618 0.96931 0.91008 1.25952 0.95636 0.94845 1.03072 1.70108 1.06738 1.41580 1.38873 0.85501 0.77213 0.79237 0.79133 1.18635 1.21309 1.19229 1.73918 1.20885 1.18428 1.03139 1.74362 1.22649 1.19157 1.03501 1.23000 0.99276 0.89874 0.88665 1.61812 1.51041 1.07904 0.95000 1.23684 0.95791 0.92075 0.97914 1.22262 1.05093 0.92451 0.92476 1.23867 0.96737 0.98104 0.94755 1.24093 0.85188 1.02319 0.90586 1.89721 1.20420 1.94218 1.27669 1.24098 0.95937 1.02007 0.80868 1.22868 1.00514 0.92552 0.91196 0.95184 0.86727 0.92765 0.92485 0.94714 0.86862 0.85157 0.89092 0.88686 0.98354 1.00001 0.92845 0.92766 0.87418 0.87877 0.87989 0.89037 0.87128 0.87810 0.89530 0.88885 0.91407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 11.01 113.37 1.25 1.91 16 2 O -0.39 -10.76 10.70 -148.98 -1.59 -12.35 16 3 C 0.06 1.65 6.26 71.98 0.45 2.10 16 4 C 0.12 2.98 6.31 86.38 0.54 3.52 16 5 N -0.47 -15.35 2.81 -514.86 -1.45 -16.80 16 6 C 0.20 8.01 7.32 137.64 1.01 9.02 16 7 C -0.02 -0.72 5.53 29.85 0.16 -0.55 16 8 C 0.04 2.26 4.95 29.85 0.15 2.41 16 9 C -0.54 -29.42 9.11 25.60 0.23 -29.18 16 10 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 11 C 0.00 0.17 5.46 84.65 0.46 0.63 16 12 N -0.93 -56.14 13.29 21.45 0.28 -55.86 16 13 Si 0.96 43.09 29.54 68.60 2.03 45.12 16 14 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 17 N -0.33 -14.25 12.18 -49.54 -0.60 -14.85 16 18 N -0.35 -13.81 10.70 -58.01 -0.62 -14.43 16 19 C 0.35 11.19 7.04 260.11 1.83 13.02 16 20 N -0.43 -10.12 5.33 -693.74 -3.70 -13.82 16 21 C 0.03 0.50 5.93 86.70 0.51 1.02 16 22 C -0.09 -0.97 6.46 31.53 0.20 -0.77 16 23 C -0.13 -1.90 1.17 -52.07 -0.06 -1.97 16 24 C 0.05 0.71 8.42 71.93 0.61 1.31 16 25 O -0.40 -7.07 12.46 -148.98 -1.86 -8.93 16 26 C 0.05 0.69 8.35 71.94 0.60 1.29 16 27 C 0.06 1.15 6.03 86.04 0.52 1.66 16 28 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.03 1.33 6.23 -2.39 -0.01 1.31 16 33 H 0.11 2.80 7.25 -2.39 -0.02 2.78 16 34 H 0.13 2.49 5.40 -2.39 -0.01 2.48 16 35 H 0.09 3.66 8.14 -2.39 -0.02 3.64 16 36 H 0.09 3.34 7.27 -2.38 -0.02 3.33 16 37 H 0.00 -0.10 6.23 -2.38 -0.01 -0.11 16 38 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 39 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 40 H 0.05 0.96 7.99 -2.39 -0.02 0.94 16 41 H 0.11 1.43 6.05 -2.39 -0.01 1.42 16 42 H 0.10 0.90 7.87 -2.39 -0.02 0.88 16 43 H 0.10 0.94 8.05 -2.38 -0.02 0.92 16 44 H 0.09 1.07 8.10 -2.38 -0.02 1.05 16 45 H 0.11 1.07 8.04 -2.39 -0.02 1.05 16 46 H 0.10 1.25 7.99 -2.39 -0.02 1.23 16 47 H 0.09 1.25 8.12 -2.38 -0.02 1.23 16 48 H 0.09 1.91 7.91 -2.39 -0.02 1.89 16 49 H 0.07 1.69 6.65 -2.39 -0.02 1.67 16 Total: -1.00 -73.71 391.74 1.91 -71.80 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.95 Total: 14.68 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 8.47 Total: 5.44 kcal Atomic # 7 Polarization: -109.67 SS G_CDS: -6.09 Total: -115.76 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -3.45 Total: -21.28 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -73.71 1.91 -71.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342868788.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.319 kcal (2) G-P(sol) polarization free energy of solvation -73.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds