Wall clock time and date at job start Tue Mar 31 2020 19:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99817 * 2 1 4 4 N 1.46905 * 109.47103 * 125.00591 * 3 2 1 5 5 C 1.38580 * 111.00384 * 163.40948 * 4 3 2 6 6 N 1.31220 * 126.46840 * 66.71183 * 5 4 3 7 7 N 1.28533 * 109.85529 * 179.97438 * 6 5 4 8 8 C 1.30295 * 110.05229 * 359.72508 * 7 6 5 9 9 C 1.50698 * 126.34633 * 180.31271 * 8 7 6 10 10 C 1.53002 * 109.47350 * 276.21259 * 9 8 7 11 11 H 1.09003 * 109.47134 * 54.47078 * 10 9 8 12 12 O 1.42904 * 109.46862 * 294.48105 * 10 9 8 13 13 C 1.50699 * 109.47580 * 174.47603 * 10 9 8 14 14 H 1.08000 * 119.99580 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99856 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00374 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99927 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47103 * 59.99687 * 17 15 13 19 19 H 1.48501 * 109.47409 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47253 * 299.99934 * 17 15 13 21 21 N 1.36446 * 126.47246 * 246.69440 * 5 4 3 22 22 C 1.46495 * 127.13931 * 0.02562 * 21 5 4 23 23 C 1.52996 * 109.47388 * 270.53941 * 22 21 5 24 24 O 1.42905 * 109.47125 * 184.94039 * 23 22 21 25 25 C 1.42904 * 113.99592 * 180.02562 * 24 23 22 26 26 C 1.46900 * 110.99666 * 287.36275 * 4 3 2 27 27 C 1.53006 * 117.49929 * 137.55175 * 26 4 3 28 28 C 1.53001 * 59.99903 * 252.50907 * 27 26 4 29 29 H 1.07996 * 120.00286 * 359.97438 * 1 2 3 30 30 H 1.08008 * 119.99662 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99970 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47198 * 5.00725 * 3 2 1 33 33 H 1.08998 * 109.47213 * 245.00436 * 3 2 1 34 34 H 1.09000 * 109.47412 * 36.20978 * 9 8 7 35 35 H 1.08996 * 109.47323 * 156.20896 * 9 8 7 36 36 H 0.96703 * 113.99176 * 304.18874 * 12 10 9 37 37 H 0.97003 * 120.00318 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.46784 * 30.54221 * 22 21 5 39 39 H 1.08998 * 109.47349 * 150.53556 * 22 21 5 40 40 H 1.08997 * 109.47255 * 304.94145 * 23 22 21 41 41 H 1.08996 * 109.47103 * 64.94019 * 23 22 21 42 42 H 1.08997 * 109.47328 * 60.00013 * 25 24 23 43 43 H 1.09006 * 109.46888 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.46972 * 299.99090 * 25 24 23 45 45 H 1.08999 * 115.55405 * 283.26081 * 26 4 3 46 46 H 1.09003 * 117.49262 * 359.97438 * 27 26 4 47 47 H 1.08996 * 117.50138 * 145.01806 * 27 26 4 48 48 H 1.08999 * 117.49825 * 252.50682 * 28 27 26 49 49 H 1.09003 * 117.49927 * 107.48578 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 3.9530 2.3206 0.9676 6 7 3.7438 3.6160 0.9667 7 7 4.8544 4.2375 0.7865 8 6 5.8306 3.3826 0.6688 9 6 7.2853 3.7122 0.4536 10 6 7.5413 3.9408 -1.0374 11 1 6.8559 4.7015 -1.4113 12 8 7.3319 2.7196 -1.7494 13 6 8.9618 4.4022 -1.2383 14 1 9.6164 4.5209 -0.3876 15 6 9.4253 4.6738 -2.5081 16 7 8.6281 4.5297 -3.5440 17 14 11.1859 5.2464 -2.7571 18 1 12.1201 4.2103 -2.2480 19 1 11.4344 5.4682 -4.2042 20 1 11.4031 6.5153 -2.0169 21 7 5.2902 2.1309 0.7737 22 6 6.0005 0.8518 0.6996 23 6 6.4479 0.4349 2.1020 24 8 7.2389 -0.7522 2.0164 25 6 7.7096 -1.2292 3.2786 26 6 2.2769 1.5043 2.4036 27 6 2.7270 0.6523 3.5922 28 6 1.4059 0.3424 2.8854 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6211 1.4027 -0.9314 34 1 7.5392 4.6154 1.0085 35 1 7.9013 2.8846 0.8053 36 1 7.8636 1.9796 -1.4258 37 1 8.9543 4.7204 -4.4374 38 1 5.3368 0.0910 0.2887 39 1 6.8738 0.9579 0.0561 40 1 7.0398 1.2346 2.5473 41 1 5.5715 0.2436 2.7211 42 1 6.8591 -1.4551 3.9217 43 1 8.3009 -2.1325 3.1280 44 1 8.3276 -0.4642 3.7485 45 1 1.9276 2.5154 2.6125 46 1 3.5566 -0.0364 3.4321 47 1 2.6740 1.1029 4.5832 48 1 0.4837 0.5891 3.4115 49 1 1.3666 -0.5499 2.2605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342897127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:52 Heat of formation + Delta-G solvation = 46.526946 kcal Electronic energy + Delta-G solvation = -30491.484610 eV Core-core repulsion = 26457.455619 eV Total energy + Delta-G solvation = -4034.028991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.65404 -38.88664 -38.17680 -36.20940 -35.08016 -34.83078 -33.39096 -32.18187 -31.11940 -29.72489 -28.01718 -26.52429 -25.85308 -25.18857 -23.57826 -22.67069 -22.32965 -21.61979 -20.23702 -20.15990 -19.67602 -17.51965 -17.01696 -16.97348 -16.26447 -16.08062 -15.86741 -15.37521 -15.26569 -14.78244 -14.64970 -14.60155 -14.31662 -14.01148 -13.70191 -13.48562 -13.14983 -12.95091 -12.66808 -12.41727 -12.24665 -11.79963 -11.65238 -11.56207 -11.38244 -11.32047 -11.15217 -11.07129 -10.92994 -10.85016 -10.80767 -10.44888 -10.22128 -10.13666 -9.90347 -9.88796 -9.50756 -9.34274 -8.87308 -8.66557 -8.58905 -8.10876 -6.03729 -4.23577 1.90914 2.05718 2.43519 3.22014 3.28144 3.33931 3.35384 3.40044 3.58011 3.93784 4.36089 4.62063 4.67587 4.72034 4.77824 4.79453 4.89887 4.94136 5.01738 5.10150 5.13235 5.16661 5.22337 5.23033 5.31901 5.40195 5.44055 5.45065 5.54335 5.58281 5.64602 5.68826 5.72758 5.95162 5.96050 6.11175 6.19845 6.31244 6.32646 6.40148 6.41516 6.64356 6.74381 6.84004 6.89877 7.43482 7.64744 7.78875 8.08738 8.76619 9.12409 9.25012 9.52475 11.00498 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.003410 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.484046 B = 8208.355466 C = 9317.399976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.137 4.137 3 C 0.094 3.906 4 N -0.433 5.433 5 C 0.328 3.672 6 N -0.310 5.310 7 N -0.296 5.296 8 C 0.227 3.773 9 C -0.066 4.066 10 C 0.238 3.762 11 H 0.066 0.934 12 O -0.561 6.561 13 C -0.575 4.575 14 H 0.058 0.942 15 C 0.082 3.918 16 N -0.856 5.856 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 N -0.455 5.455 22 C 0.118 3.882 23 C 0.052 3.948 24 O -0.384 6.384 25 C 0.034 3.966 26 C 0.017 3.983 27 C -0.168 4.168 28 C -0.158 4.158 29 H 0.096 0.904 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.338 0.662 37 H 0.262 0.738 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.040 0.960 43 H 0.089 0.911 44 H 0.043 0.957 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.035 -13.995 13.923 22.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.156 4.156 3 C -0.032 4.032 4 N -0.157 5.157 5 C -0.028 4.028 6 N -0.153 5.153 7 N -0.136 5.136 8 C -0.040 4.040 9 C -0.107 4.107 10 C 0.180 3.820 11 H 0.084 0.916 12 O -0.363 6.363 13 C -0.612 4.612 14 H 0.077 0.923 15 C -0.125 4.125 16 N -0.491 5.491 17 Si 0.719 3.281 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.200 1.200 21 N -0.149 5.149 22 C -0.005 4.005 23 C -0.026 4.026 24 O -0.302 6.302 25 C -0.063 4.063 26 C -0.091 4.091 27 C -0.206 4.206 28 C -0.196 4.196 29 H 0.114 0.886 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.182 0.818 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.120 0.880 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.116 0.884 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.932 -12.821 13.287 21.984 hybrid contribution 1.669 -0.442 0.302 1.753 sum -10.263 -13.263 13.589 21.584 Atomic orbital electron populations 1.23837 0.95699 1.01936 1.01022 1.22765 0.95544 0.97978 0.99295 1.21250 0.93916 0.95753 0.92262 1.58187 1.13241 1.41525 1.02780 1.21972 0.83838 0.90507 1.06501 1.74496 1.19852 1.01529 1.19438 1.74058 0.94361 1.25776 1.19389 1.25387 0.99369 0.79235 1.00005 1.21283 0.82694 1.02513 1.04169 1.19428 0.96457 0.84292 0.81824 0.91643 1.86691 1.66900 1.20286 1.62461 1.21510 0.97380 1.49174 0.93182 0.92343 1.25019 0.97445 0.93990 0.96050 1.70066 1.35277 1.45120 0.98637 0.86699 0.84903 0.79386 0.77159 1.20122 1.21204 1.20038 1.46031 1.06790 1.07967 1.54136 1.21474 0.98904 0.83026 0.97134 1.22760 0.94895 0.87813 0.97133 1.87827 1.69970 1.42486 1.29935 1.22761 0.98447 0.99567 0.85477 1.22370 1.01777 0.96226 0.88753 1.23077 0.98703 1.02979 0.95816 1.23169 0.94431 0.99344 1.02643 0.88565 0.88226 0.86840 0.92303 0.89560 0.88377 0.90991 0.81799 0.92826 0.87801 0.87224 0.92712 0.92525 0.94088 0.89272 0.93829 0.87972 0.88520 0.88644 0.88448 0.87606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.50 13.81 29.01 0.40 -1.10 16 2 C -0.14 -1.29 6.98 -36.03 -0.25 -1.54 16 3 C 0.09 1.16 5.37 -4.98 -0.03 1.14 16 4 N -0.43 -5.67 4.61 -168.30 -0.78 -6.45 16 5 C 0.33 5.49 6.38 -318.88 -2.04 3.45 16 6 N -0.31 -6.13 12.07 30.31 0.37 -5.77 16 7 N -0.30 -6.40 12.18 32.99 0.40 -6.00 16 8 C 0.23 4.45 7.10 -154.02 -1.09 3.35 16 9 C -0.07 -1.31 5.09 -27.88 -0.14 -1.45 16 10 C 0.24 5.86 2.81 -27.88 -0.08 5.78 16 11 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 12 O -0.56 -13.73 12.25 -35.23 -0.43 -14.16 16 13 C -0.57 -15.20 8.78 -34.44 -0.30 -15.50 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 16 N -0.86 -25.09 12.84 55.43 0.71 -24.38 16 17 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 N -0.46 -7.59 2.81 -114.09 -0.32 -7.91 16 22 C 0.12 1.63 6.21 -4.05 -0.03 1.61 16 23 C 0.05 0.62 6.26 37.16 0.23 0.85 16 24 O -0.38 -4.58 10.70 -35.23 -0.38 -4.95 16 25 C 0.03 0.29 11.01 101.05 1.11 1.40 16 26 C 0.02 0.19 4.88 -67.71 -0.33 -0.14 16 27 C -0.17 -1.59 10.46 -26.73 -0.28 -1.87 16 28 C -0.16 -1.35 9.10 -26.73 -0.24 -1.59 16 29 H 0.10 0.77 7.84 -52.49 -0.41 0.36 16 30 H 0.10 0.65 8.06 -52.48 -0.42 0.22 16 31 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.06 0.75 7.70 -51.93 -0.40 0.35 16 33 H 0.09 1.21 7.96 -51.93 -0.41 0.79 16 34 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 35 H 0.07 1.25 7.62 -51.93 -0.40 0.86 16 36 H 0.34 7.12 7.84 45.56 0.36 7.48 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.11 1.58 6.22 -51.93 -0.32 1.26 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.64 7.22 -51.93 -0.37 0.27 16 42 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 1.33 8.05 -51.93 -0.42 0.91 16 46 H 0.10 0.94 7.22 -51.93 -0.37 0.56 16 47 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.11 0.88 6.18 -51.93 -0.32 0.56 16 LS Contribution 407.26 15.07 6.14 6.14 Total: -1.00 -32.50 407.26 -9.73 -42.23 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -7.27 Total: 8.93 kcal Atomic # 6 Polarization: -0.29 SS G_CDS: -3.16 Total: -3.45 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.38 Total: -50.51 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.81 Total: -19.12 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.50 -9.73 -42.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342897127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.761 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds