Wall clock time and date at job start Tue Mar 31 2020 19:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50696 * 119.99817 * 2 1 4 4 N 1.46905 * 109.47103 * 125.00591 * 3 2 1 5 5 C 1.38580 * 111.00384 * 163.40948 * 4 3 2 6 6 N 1.31220 * 126.46840 * 66.71183 * 5 4 3 7 7 N 1.28533 * 109.85529 * 179.97438 * 6 5 4 8 8 C 1.30295 * 110.05229 * 359.72508 * 7 6 5 9 9 C 1.50698 * 126.34633 * 180.31271 * 8 7 6 10 10 C 1.53002 * 109.47350 * 276.21259 * 9 8 7 11 11 H 1.09003 * 109.47134 * 54.47078 * 10 9 8 12 12 O 1.42904 * 109.46862 * 294.48105 * 10 9 8 13 13 C 1.50699 * 109.47580 * 174.47603 * 10 9 8 14 14 H 1.08000 * 119.99580 * 359.97438 * 13 10 9 15 15 C 1.37871 * 119.99856 * 180.02562 * 13 10 9 16 16 N 1.31510 * 120.00374 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 119.99927 * 179.97438 * 15 13 10 18 18 H 1.48503 * 109.47103 * 59.99687 * 17 15 13 19 19 H 1.48501 * 109.47409 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47253 * 299.99934 * 17 15 13 21 21 N 1.36446 * 126.47246 * 246.69440 * 5 4 3 22 22 C 1.46495 * 127.13931 * 0.02562 * 21 5 4 23 23 C 1.52996 * 109.47388 * 270.53941 * 22 21 5 24 24 O 1.42905 * 109.47125 * 184.94039 * 23 22 21 25 25 C 1.42904 * 113.99592 * 180.02562 * 24 23 22 26 26 C 1.46900 * 110.99666 * 287.36275 * 4 3 2 27 27 C 1.53006 * 117.49929 * 137.55175 * 26 4 3 28 28 C 1.53001 * 59.99903 * 252.50907 * 27 26 4 29 29 H 1.07996 * 120.00286 * 359.97438 * 1 2 3 30 30 H 1.08008 * 119.99662 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99970 * 180.02562 * 2 1 3 32 32 H 1.09006 * 109.47198 * 5.00725 * 3 2 1 33 33 H 1.08998 * 109.47213 * 245.00436 * 3 2 1 34 34 H 1.09000 * 109.47412 * 36.20978 * 9 8 7 35 35 H 1.08996 * 109.47323 * 156.20896 * 9 8 7 36 36 H 0.96703 * 113.99176 * 304.18874 * 12 10 9 37 37 H 0.97003 * 120.00318 * 180.02562 * 16 15 13 38 38 H 1.09003 * 109.46784 * 30.54221 * 22 21 5 39 39 H 1.08998 * 109.47349 * 150.53556 * 22 21 5 40 40 H 1.08997 * 109.47255 * 304.94145 * 23 22 21 41 41 H 1.08996 * 109.47103 * 64.94019 * 23 22 21 42 42 H 1.08997 * 109.47328 * 60.00013 * 25 24 23 43 43 H 1.09006 * 109.46888 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.46972 * 299.99090 * 25 24 23 45 45 H 1.08999 * 115.55405 * 283.26081 * 26 4 3 46 46 H 1.09003 * 117.49262 * 359.97438 * 27 26 4 47 47 H 1.08996 * 117.50138 * 145.01806 * 27 26 4 48 48 H 1.08999 * 117.49825 * 252.50682 * 28 27 26 49 49 H 1.09003 * 117.49927 * 107.48578 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 3.9530 2.3206 0.9676 6 7 3.7438 3.6160 0.9667 7 7 4.8544 4.2375 0.7865 8 6 5.8306 3.3826 0.6688 9 6 7.2853 3.7122 0.4536 10 6 7.5413 3.9408 -1.0374 11 1 6.8559 4.7015 -1.4113 12 8 7.3319 2.7196 -1.7494 13 6 8.9618 4.4022 -1.2383 14 1 9.6164 4.5209 -0.3876 15 6 9.4253 4.6738 -2.5081 16 7 8.6281 4.5297 -3.5440 17 14 11.1859 5.2464 -2.7571 18 1 12.1201 4.2103 -2.2480 19 1 11.4344 5.4682 -4.2042 20 1 11.4031 6.5153 -2.0169 21 7 5.2902 2.1309 0.7737 22 6 6.0005 0.8518 0.6996 23 6 6.4479 0.4349 2.1020 24 8 7.2389 -0.7522 2.0164 25 6 7.7096 -1.2292 3.2786 26 6 2.2769 1.5043 2.4036 27 6 2.7270 0.6523 3.5922 28 6 1.4059 0.3424 2.8854 29 1 -0.5400 0.9352 0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0897 33 1 2.6211 1.4027 -0.9314 34 1 7.5392 4.6154 1.0085 35 1 7.9013 2.8846 0.8053 36 1 7.8636 1.9796 -1.4258 37 1 8.9543 4.7204 -4.4374 38 1 5.3368 0.0910 0.2887 39 1 6.8738 0.9579 0.0561 40 1 7.0398 1.2346 2.5473 41 1 5.5715 0.2436 2.7211 42 1 6.8591 -1.4551 3.9217 43 1 8.3009 -2.1325 3.1280 44 1 8.3276 -0.4642 3.7485 45 1 1.9276 2.5154 2.6125 46 1 3.5566 -0.0364 3.4321 47 1 2.6740 1.1029 4.5832 48 1 0.4837 0.5891 3.4115 49 1 1.3666 -0.5499 2.2605 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001342897127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:51 Heat of formation + Delta-G solvation = 25.655897 kcal Electronic energy + Delta-G solvation = -30492.389646 eV Core-core repulsion = 26457.455619 eV Total energy + Delta-G solvation = -4034.934027 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.08064 -39.84580 -39.08191 -38.07852 -36.20860 -35.85552 -34.42239 -34.25055 -32.65667 -30.83380 -29.64148 -27.47569 -27.18541 -26.55050 -24.66191 -23.89585 -23.31430 -23.06339 -21.54625 -21.27705 -20.68663 -19.18455 -18.46099 -18.01877 -17.38354 -17.04521 -16.89161 -16.66115 -16.58317 -16.32346 -16.03945 -15.77281 -15.62181 -15.32378 -14.99968 -14.65280 -14.51150 -14.27846 -13.79314 -13.41534 -13.25714 -13.12687 -13.05716 -12.78064 -12.69992 -12.65018 -12.52975 -12.38831 -12.26996 -12.13871 -12.04648 -11.78797 -11.51491 -11.38075 -11.22555 -11.11610 -10.74702 -10.69139 -10.50980 -10.20952 -10.01187 -9.78513 -8.12529 -6.39245 0.62880 0.98658 1.41998 1.44329 1.45940 1.53567 1.73201 2.40940 2.42385 2.78841 2.94232 3.13929 3.39724 3.54900 3.78759 3.83727 3.89274 3.93345 4.00579 4.04941 4.09951 4.15309 4.22417 4.27814 4.34339 4.46591 4.49085 4.50544 4.54971 4.63846 4.66533 4.71279 4.78718 4.82875 4.85957 4.90078 5.03647 5.07154 5.11637 5.27238 5.44920 5.59059 5.60772 5.70161 5.70821 5.92100 6.02799 6.03711 6.18343 6.71319 7.32224 7.50090 7.65027 8.92193 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.003410 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.484046 B = 8208.355466 C = 9317.399976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C 0.096 3.904 4 N -0.421 5.421 5 C 0.346 3.654 6 N -0.345 5.345 7 N -0.334 5.334 8 C 0.215 3.785 9 C -0.048 4.048 10 C 0.244 3.756 11 H 0.013 0.987 12 O -0.575 6.575 13 C -0.583 4.583 14 H 0.072 0.928 15 C 0.026 3.974 16 N -0.901 5.901 17 Si 0.962 3.038 18 H -0.262 1.262 19 H -0.289 1.289 20 H -0.269 1.269 21 N -0.450 5.450 22 C 0.115 3.885 23 C 0.065 3.935 24 O -0.401 6.401 25 C 0.026 3.974 26 C -0.014 4.014 27 C -0.161 4.161 28 C -0.130 4.130 29 H 0.094 0.906 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.354 0.646 37 H 0.260 0.740 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.051 0.949 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.104 0.896 44 H 0.047 0.953 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.116 0.884 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.960 -16.550 15.801 25.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.168 4.168 3 C -0.030 4.030 4 N -0.147 5.147 5 C -0.011 4.011 6 N -0.188 5.188 7 N -0.173 5.173 8 C -0.054 4.054 9 C -0.088 4.088 10 C 0.186 3.814 11 H 0.031 0.969 12 O -0.380 6.380 13 C -0.621 4.621 14 H 0.090 0.910 15 C -0.177 4.177 16 N -0.538 5.538 17 Si 0.786 3.214 18 H -0.186 1.186 19 H -0.215 1.215 20 H -0.194 1.194 21 N -0.143 5.143 22 C -0.007 4.007 23 C -0.013 4.013 24 O -0.319 6.319 25 C -0.069 4.069 26 C -0.122 4.122 27 C -0.199 4.199 28 C -0.167 4.167 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.200 0.800 37 H 0.069 0.931 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.123 0.877 44 H 0.066 0.934 45 H 0.100 0.900 46 H 0.116 0.884 47 H 0.124 0.876 48 H 0.134 0.866 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.848 -15.399 15.198 24.667 hybrid contribution 1.512 0.270 -0.255 1.557 sum -10.336 -15.129 14.943 23.644 Atomic orbital electron populations 1.24037 0.95087 1.03027 0.98137 1.22581 0.95866 0.96484 1.01841 1.21236 0.93367 0.97493 0.90925 1.58534 1.13022 1.39231 1.03904 1.22429 0.84593 0.90460 1.03610 1.74415 1.19616 1.03199 1.21535 1.73946 0.95374 1.27482 1.20536 1.25189 0.98977 0.80270 1.00945 1.20946 0.83526 1.03710 1.00623 1.19087 0.94537 0.83351 0.84463 0.96880 1.86619 1.67409 1.20752 1.63177 1.21950 0.98221 1.48308 0.93587 0.91031 1.25923 1.01794 0.94106 0.95839 1.70230 1.37503 1.47026 0.99053 0.85578 0.79717 0.79263 0.76811 1.18624 1.21500 1.19363 1.46110 1.06836 1.08077 1.53286 1.21656 0.98612 0.81779 0.98679 1.22551 0.95254 0.88030 0.95489 1.87801 1.70025 1.42130 1.31964 1.22993 0.99279 1.00201 0.84462 1.22395 1.04343 0.96638 0.88792 1.23163 0.99408 1.01959 0.95342 1.23268 0.94638 0.97581 1.01224 0.88749 0.85733 0.85806 0.93411 0.92126 0.88270 0.88274 0.80020 0.93082 0.86888 0.87874 0.93101 0.91628 0.92657 0.87743 0.93434 0.90024 0.88390 0.87593 0.86602 0.86770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 13.81 67.78 0.94 -1.27 16 2 C -0.15 -2.55 6.98 25.65 0.18 -2.37 16 3 C 0.10 2.39 5.37 85.55 0.46 2.85 16 4 N -0.42 -10.96 4.61 -686.37 -3.16 -14.13 16 5 C 0.35 11.85 6.38 260.11 1.66 13.51 16 6 N -0.34 -14.29 12.07 -58.01 -0.70 -14.99 16 7 N -0.33 -15.13 12.18 -49.54 -0.60 -15.73 16 8 C 0.21 8.66 7.10 137.64 0.98 9.64 16 9 C -0.05 -1.92 5.09 29.85 0.15 -1.77 16 10 C 0.24 12.40 2.81 29.85 0.08 12.48 16 11 H 0.01 0.81 8.14 -2.39 -0.02 0.79 16 12 O -0.58 -28.89 12.25 -148.98 -1.82 -30.71 16 13 C -0.58 -31.04 8.78 25.60 0.22 -30.82 16 14 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 15 C 0.03 1.43 5.40 84.65 0.46 1.89 16 16 N -0.90 -54.28 12.84 21.44 0.28 -54.00 16 17 Si 0.96 42.73 29.54 68.60 2.03 44.76 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 21 N -0.45 -15.18 2.81 -514.88 -1.45 -16.63 16 22 C 0.12 3.10 6.21 86.38 0.54 3.63 16 23 C 0.06 1.44 6.26 71.98 0.45 1.89 16 24 O -0.40 -8.71 10.70 -148.98 -1.59 -10.31 16 25 C 0.03 0.39 11.01 113.37 1.25 1.63 16 26 C -0.01 -0.30 4.88 44.92 0.22 -0.09 16 27 C -0.16 -2.67 10.46 30.60 0.32 -2.35 16 28 C -0.13 -1.84 9.10 30.59 0.28 -1.56 16 29 H 0.09 1.32 7.84 -2.91 -0.02 1.30 16 30 H 0.12 1.12 8.06 -2.91 -0.02 1.09 16 31 H 0.12 1.90 8.06 -2.91 -0.02 1.88 16 32 H 0.05 1.27 7.70 -2.38 -0.02 1.25 16 33 H 0.06 1.78 7.96 -2.39 -0.02 1.77 16 34 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 35 H 0.10 3.36 7.62 -2.39 -0.02 3.35 16 36 H 0.35 15.00 7.84 -74.06 -0.58 14.42 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.10 2.91 6.22 -2.39 -0.01 2.90 16 40 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.35 7.22 -2.39 -0.02 1.33 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.10 1.19 8.14 -2.38 -0.02 1.18 16 44 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.08 2.16 8.05 -2.39 -0.02 2.14 16 46 H 0.10 1.63 7.22 -2.39 -0.02 1.61 16 47 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.11 1.49 6.18 -2.39 -0.01 1.47 16 Total: -1.00 -73.21 407.26 1.51 -71.70 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.36 Total: 32.74 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 8.18 Total: 7.30 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -5.64 Total: -115.48 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -3.42 Total: -41.02 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -73.21 1.51 -71.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342897127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.353 kcal (2) G-P(sol) polarization free energy of solvation -73.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds