Wall clock time and date at job start Tue Mar 31 2020 19:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99598 * 2 1 4 4 C 1.53001 * 109.46762 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47153 * 180.02562 * 4 3 2 6 6 C 1.36735 * 127.13480 * 89.97727 * 5 4 3 7 7 C 1.50699 * 126.34764 * 359.97438 * 6 5 4 8 8 C 1.53007 * 109.46826 * 269.99428 * 7 6 5 9 9 C 1.50699 * 109.46826 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00378 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99735 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00231 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99998 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47009 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46952 * 119.99600 * 13 11 9 16 16 H 1.48502 * 109.47116 * 239.99924 * 13 11 9 17 17 N 1.30294 * 107.30568 * 179.97438 * 6 5 4 18 18 N 1.28530 * 110.05622 * 0.02562 * 17 6 5 19 19 C 1.31221 * 109.85675 * 359.97438 * 18 17 6 20 20 N 1.38582 * 126.47333 * 179.97438 * 19 18 17 21 21 C 1.48503 * 110.99784 * 0.02562 * 20 19 18 22 22 C 1.54272 * 104.73853 * 200.66758 * 21 20 19 23 23 H 1.08992 * 112.65617 * 260.26179 * 22 21 20 24 24 C 1.54393 * 108.77079 * 134.58161 * 22 21 20 25 25 O 1.44380 * 104.91817 * 224.67505 * 24 22 21 26 26 C 1.44386 * 105.25403 * 40.76635 * 25 24 22 27 27 C 1.54391 * 104.91726 * 319.23627 * 26 25 24 28 28 H 1.09001 * 112.68327 * 261.65747 * 27 26 25 29 29 C 1.48500 * 111.00277 * 244.60833 * 20 19 18 30 30 H 1.09001 * 109.47023 * 299.99309 * 1 2 3 31 31 H 1.08995 * 109.47231 * 59.99977 * 1 2 3 32 32 H 1.09003 * 109.46792 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46827 * 60.00404 * 3 2 1 34 34 H 1.08997 * 109.47254 * 300.00110 * 3 2 1 35 35 H 1.09002 * 109.46845 * 60.00118 * 4 3 2 36 36 H 1.09003 * 109.47141 * 300.00455 * 4 3 2 37 37 H 1.08995 * 109.47753 * 29.99689 * 7 6 5 38 38 H 1.09006 * 109.47027 * 150.00207 * 7 6 5 39 39 H 1.08997 * 109.47278 * 300.00090 * 8 7 6 40 40 H 1.09006 * 109.46681 * 60.00567 * 8 7 6 41 41 H 0.96997 * 120.00308 * 180.02562 * 12 11 9 42 42 H 1.09007 * 110.38307 * 319.47838 * 21 20 19 43 43 H 1.08993 * 110.38704 * 81.74099 * 21 20 19 44 44 H 1.08999 * 110.35307 * 343.53987 * 24 22 21 45 45 H 1.09005 * 110.35051 * 105.71068 * 24 22 21 46 46 H 1.08997 * 110.35126 * 78.09618 * 26 25 24 47 47 H 1.08999 * 110.34952 * 200.38062 * 26 25 24 48 48 H 1.09001 * 110.38616 * 278.15129 * 29 20 19 49 49 H 1.08999 * 110.38417 * 40.51553 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0013 6 6 4.4661 3.2770 1.0917 7 6 4.2902 2.8857 2.5363 8 6 2.9131 3.3406 3.0238 9 6 2.7374 2.9498 4.4686 10 1 3.5289 2.4295 4.9874 11 6 1.5661 3.2566 5.1282 12 7 0.6024 3.8907 4.4966 13 14 1.3485 2.7729 6.9193 14 1 2.5699 2.0751 7.3955 15 1 1.1235 3.9916 7.7374 16 1 0.1791 1.8668 7.0488 17 7 4.9655 4.3965 0.6502 18 7 4.9685 4.4014 -0.6351 19 6 4.4674 3.2756 -1.0862 20 7 4.3088 2.9188 -2.4159 21 6 4.7894 3.9968 -3.3171 22 6 4.0909 3.7222 -4.6649 23 1 4.7389 3.2116 -5.3772 24 6 3.5325 5.0523 -5.2152 25 8 2.2001 4.7353 -5.6721 26 6 1.6547 3.8514 -4.6690 27 6 2.8187 2.9086 -4.2948 28 1 2.7652 1.9497 -4.8102 29 6 2.8717 2.7700 -2.7592 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8463 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8574 0.6436 -0.8891 36 1 3.8567 0.6438 0.8908 37 1 4.3700 1.8028 2.6318 38 1 5.0642 3.3616 3.1385 39 1 2.8333 4.4234 2.9284 40 1 2.1391 2.8647 2.4216 41 1 -0.2214 4.1069 4.9607 42 1 4.4976 4.9733 -2.9303 43 1 5.8721 3.9423 -3.4306 44 1 3.4940 5.8028 -4.4257 45 1 4.1450 5.4064 -6.0443 46 1 1.3326 4.4205 -3.7970 47 1 0.8216 3.2807 -5.0792 48 1 2.5079 1.7891 -2.4534 49 1 2.2849 3.5577 -2.2866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345393661.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:22 Heat of formation + Delta-G solvation = 2.669935 kcal Electronic energy + Delta-G solvation = -30629.328731 eV Core-core repulsion = 26593.397957 eV Total energy + Delta-G solvation = -4035.930773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.80281 -40.72141 -38.08201 -37.36220 -35.18319 -34.08700 -32.57133 -31.40796 -31.11076 -29.79619 -28.39646 -26.67467 -26.37637 -25.35794 -24.19480 -23.49456 -22.57797 -21.99095 -20.67745 -20.28790 -19.53379 -17.59781 -17.31642 -16.53242 -16.38474 -16.16878 -16.08951 -15.88957 -15.62084 -15.32426 -14.87782 -14.69938 -14.54786 -14.13953 -13.73317 -13.50443 -13.14631 -13.08112 -12.69422 -12.52750 -12.34834 -12.29029 -11.73261 -11.59255 -11.54696 -11.40371 -11.32362 -11.24916 -11.22680 -11.06116 -11.02553 -10.70472 -10.39673 -10.18534 -10.13377 -9.98116 -9.90850 -9.69885 -9.42945 -9.24499 -8.46546 -8.10711 -6.11843 -4.15409 1.91894 2.33445 3.11571 3.24916 3.33219 3.36849 3.45758 3.56055 3.87869 3.96275 4.20712 4.36729 4.48426 4.55579 4.61586 4.76361 4.79615 4.85325 4.89669 4.94205 5.06060 5.17452 5.20496 5.24165 5.24629 5.26841 5.36233 5.39252 5.40316 5.42631 5.47061 5.55162 5.63587 5.65532 5.67833 5.75300 5.82811 6.04596 6.28902 6.34771 6.39291 6.41288 6.58021 6.82039 6.97191 7.29290 7.48258 7.60947 7.85493 8.23074 8.90410 9.08272 9.49557 10.99240 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.003211 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.109093 B = 8717.618496 C = 9459.265613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.036 3.964 4 C 0.115 3.885 5 N -0.474 5.474 6 C 0.218 3.782 7 C -0.034 4.034 8 C 0.032 3.968 9 C -0.522 4.522 10 H 0.060 0.940 11 C 0.060 3.940 12 N -0.893 5.893 13 Si 0.894 3.106 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.284 1.284 17 N -0.293 5.293 18 N -0.317 5.317 19 C 0.324 3.676 20 N -0.426 5.426 21 C 0.057 3.943 22 C -0.123 4.123 23 H 0.106 0.894 24 C 0.048 3.952 25 O -0.373 6.373 26 C 0.048 3.952 27 C -0.119 4.119 28 H 0.107 0.893 29 C 0.033 3.967 30 H 0.051 0.949 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.025 0.975 40 H 0.014 0.986 41 H 0.261 0.739 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.063 0.937 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.166 -5.963 -19.259 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.041 4.041 4 C -0.009 4.009 5 N -0.170 5.170 6 C -0.050 4.050 7 C -0.074 4.074 8 C -0.006 4.006 9 C -0.561 4.561 10 H 0.078 0.922 11 C -0.142 4.142 12 N -0.532 5.532 13 Si 0.721 3.279 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.210 1.210 17 N -0.131 5.131 18 N -0.161 5.161 19 C -0.033 4.033 20 N -0.149 5.149 21 C -0.070 4.070 22 C -0.142 4.142 23 H 0.124 0.876 24 C -0.029 4.029 25 O -0.291 6.291 26 C -0.029 4.029 27 C -0.138 4.138 28 H 0.125 0.875 29 C -0.094 4.094 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.089 0.911 38 H 0.109 0.891 39 H 0.044 0.956 40 H 0.032 0.968 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.113 0.887 44 H 0.084 0.916 45 H 0.114 0.886 46 H 0.082 0.918 47 H 0.114 0.886 48 H 0.113 0.887 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.914 -5.100 -19.494 20.360 hybrid contribution -1.335 -0.783 1.326 2.038 sum 1.579 -5.883 -18.168 19.162 Atomic orbital electron populations 1.22782 0.80076 1.02842 1.00632 1.87749 1.20473 1.26606 1.95617 1.23065 0.92641 0.85883 1.02533 1.21522 0.92487 0.80713 1.06141 1.46045 1.48769 1.16226 1.05948 1.25649 0.98245 0.88654 0.92404 1.20498 1.03504 1.00864 0.82493 1.19120 0.87996 0.97447 0.96034 1.21169 1.01227 1.37735 0.95929 0.92176 1.24997 0.95919 0.94950 0.98309 1.69971 1.06124 1.40343 1.36734 0.86507 0.78148 0.78303 0.84904 1.19567 1.20898 1.21027 1.74031 1.19660 1.17505 1.01863 1.74500 1.22263 1.15095 1.04257 1.22618 1.03791 0.89453 0.87427 1.62175 1.15283 1.40352 0.97139 1.23168 1.01329 0.93198 0.89324 1.23380 0.96910 0.96562 0.97345 0.87577 1.23637 0.83770 0.95469 1.00051 1.89125 1.28394 1.66508 1.45067 1.23617 0.96048 0.90899 0.92349 1.23310 0.94973 1.00590 0.94918 0.87493 1.23591 0.87600 1.03051 0.95127 0.93038 0.94229 0.89375 0.90433 0.92968 0.88008 0.87298 0.91052 0.89066 0.95636 0.96767 0.92936 0.90607 0.88733 0.91578 0.88582 0.91842 0.88617 0.88705 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.39 -5.25 10.70 -35.23 -0.38 -5.62 16 3 C 0.04 0.51 5.95 37.16 0.22 0.73 16 4 C 0.12 1.57 5.66 -4.04 -0.02 1.54 16 5 N -0.47 -7.80 2.81 -114.08 -0.32 -8.12 16 6 C 0.22 4.23 7.32 -154.02 -1.13 3.10 16 7 C -0.03 -0.67 5.53 -27.88 -0.15 -0.83 16 8 C 0.03 0.79 4.96 -27.88 -0.14 0.65 16 9 C -0.52 -13.94 9.11 -34.44 -0.31 -14.26 16 10 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 11 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 12 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 13 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 14 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 N -0.29 -6.20 12.18 32.99 0.40 -5.79 16 18 N -0.32 -6.10 10.98 30.32 0.33 -5.76 16 19 C 0.32 5.28 6.99 -318.87 -2.23 3.05 16 20 N -0.43 -5.38 5.42 -170.32 -0.92 -6.30 16 21 C 0.06 0.62 5.64 -2.27 -0.01 0.61 16 22 C -0.12 -1.02 4.21 -87.91 -0.37 -1.40 16 23 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 24 C 0.05 0.41 7.17 37.89 0.27 0.68 16 25 O -0.37 -3.91 11.65 -35.23 -0.41 -4.32 16 26 C 0.05 0.42 7.17 37.89 0.27 0.69 16 27 C -0.12 -1.00 4.21 -87.91 -0.37 -1.37 16 28 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 29 C 0.03 0.36 4.50 -2.27 -0.01 0.34 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.35 6.23 -51.93 -0.32 1.02 16 34 H 0.05 0.67 5.25 -51.93 -0.27 0.39 16 35 H 0.10 1.20 8.06 -51.93 -0.42 0.78 16 36 H 0.11 1.46 7.25 -51.93 -0.38 1.08 16 37 H 0.07 1.28 7.27 -51.93 -0.38 0.91 16 38 H 0.09 1.81 8.14 -51.93 -0.42 1.38 16 39 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.01 0.36 6.23 -51.93 -0.32 0.04 16 41 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.08 0.94 6.43 -51.93 -0.33 0.61 16 43 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 0.60 7.14 -51.93 -0.37 0.23 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.59 7.14 -51.93 -0.37 0.22 16 47 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 0.95 5.77 -51.93 -0.30 0.65 16 49 H 0.06 0.73 6.94 -51.93 -0.36 0.37 16 LS Contribution 383.95 15.07 5.79 5.79 Total: -1.00 -32.34 383.95 -10.36 -42.70 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -7.60 Total: 0.03 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -2.97 Total: -3.41 kcal Atomic # 7 Polarization: -51.23 SS G_CDS: 0.23 Total: -51.01 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: -0.79 Total: -9.94 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.34 -10.36 -42.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345393661.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.374 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds