Wall clock time and date at job start Tue Mar 31 2020 19:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99598 * 2 1 4 4 C 1.53001 * 109.46762 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47153 * 180.02562 * 4 3 2 6 6 C 1.36735 * 127.13480 * 89.97727 * 5 4 3 7 7 C 1.50699 * 126.34764 * 359.97438 * 6 5 4 8 8 C 1.53007 * 109.46826 * 269.99428 * 7 6 5 9 9 C 1.50699 * 109.46826 * 180.02562 * 8 7 6 10 10 H 1.07996 * 120.00378 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99735 * 180.02562 * 9 8 7 12 12 N 1.31517 * 120.00231 * 359.97438 * 11 9 8 13 13 Si 1.86805 * 119.99998 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47009 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.46952 * 119.99600 * 13 11 9 16 16 H 1.48502 * 109.47116 * 239.99924 * 13 11 9 17 17 N 1.30294 * 107.30568 * 179.97438 * 6 5 4 18 18 N 1.28530 * 110.05622 * 0.02562 * 17 6 5 19 19 C 1.31221 * 109.85675 * 359.97438 * 18 17 6 20 20 N 1.38582 * 126.47333 * 179.97438 * 19 18 17 21 21 C 1.48503 * 110.99784 * 0.02562 * 20 19 18 22 22 C 1.54272 * 104.73853 * 200.66758 * 21 20 19 23 23 H 1.08992 * 112.65617 * 260.26179 * 22 21 20 24 24 C 1.54393 * 108.77079 * 134.58161 * 22 21 20 25 25 O 1.44380 * 104.91817 * 224.67505 * 24 22 21 26 26 C 1.44386 * 105.25403 * 40.76635 * 25 24 22 27 27 C 1.54391 * 104.91726 * 319.23627 * 26 25 24 28 28 H 1.09001 * 112.68327 * 261.65747 * 27 26 25 29 29 C 1.48500 * 111.00277 * 244.60833 * 20 19 18 30 30 H 1.09001 * 109.47023 * 299.99309 * 1 2 3 31 31 H 1.08995 * 109.47231 * 59.99977 * 1 2 3 32 32 H 1.09003 * 109.46792 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46827 * 60.00404 * 3 2 1 34 34 H 1.08997 * 109.47254 * 300.00110 * 3 2 1 35 35 H 1.09002 * 109.46845 * 60.00118 * 4 3 2 36 36 H 1.09003 * 109.47141 * 300.00455 * 4 3 2 37 37 H 1.08995 * 109.47753 * 29.99689 * 7 6 5 38 38 H 1.09006 * 109.47027 * 150.00207 * 7 6 5 39 39 H 1.08997 * 109.47278 * 300.00090 * 8 7 6 40 40 H 1.09006 * 109.46681 * 60.00567 * 8 7 6 41 41 H 0.96997 * 120.00308 * 180.02562 * 12 11 9 42 42 H 1.09007 * 110.38307 * 319.47838 * 21 20 19 43 43 H 1.08993 * 110.38704 * 81.74099 * 21 20 19 44 44 H 1.08999 * 110.35307 * 343.53987 * 24 22 21 45 45 H 1.09005 * 110.35051 * 105.71068 * 24 22 21 46 46 H 1.08997 * 110.35126 * 78.09618 * 26 25 24 47 47 H 1.08999 * 110.34952 * 200.38062 * 26 25 24 48 48 H 1.09001 * 110.38616 * 278.15129 * 29 20 19 49 49 H 1.08999 * 110.38417 * 40.51553 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1313 2.5230 0.0013 6 6 4.4661 3.2770 1.0917 7 6 4.2902 2.8857 2.5363 8 6 2.9131 3.3406 3.0238 9 6 2.7374 2.9498 4.4686 10 1 3.5289 2.4295 4.9874 11 6 1.5661 3.2566 5.1282 12 7 0.6024 3.8907 4.4966 13 14 1.3485 2.7729 6.9193 14 1 2.5699 2.0751 7.3955 15 1 1.1235 3.9916 7.7374 16 1 0.1791 1.8668 7.0488 17 7 4.9655 4.3965 0.6502 18 7 4.9685 4.4014 -0.6351 19 6 4.4674 3.2756 -1.0862 20 7 4.3088 2.9188 -2.4159 21 6 4.7894 3.9968 -3.3171 22 6 4.0909 3.7222 -4.6649 23 1 4.7389 3.2116 -5.3772 24 6 3.5325 5.0523 -5.2152 25 8 2.2001 4.7353 -5.6721 26 6 1.6547 3.8514 -4.6690 27 6 2.8187 2.9086 -4.2948 28 1 2.7652 1.9497 -4.8102 29 6 2.8717 2.7700 -2.7592 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8463 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8574 0.6436 -0.8891 36 1 3.8567 0.6438 0.8908 37 1 4.3700 1.8028 2.6318 38 1 5.0642 3.3616 3.1385 39 1 2.8333 4.4234 2.9284 40 1 2.1391 2.8647 2.4216 41 1 -0.2214 4.1069 4.9607 42 1 4.4976 4.9733 -2.9303 43 1 5.8721 3.9423 -3.4306 44 1 3.4940 5.8028 -4.4257 45 1 4.1450 5.4064 -6.0443 46 1 1.3326 4.4205 -3.7970 47 1 0.8216 3.2807 -5.0792 48 1 2.5079 1.7891 -2.4534 49 1 2.2849 3.5577 -2.2866 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345393661.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:21 Heat of formation + Delta-G solvation = -17.479717 kcal Electronic energy + Delta-G solvation = -30630.202485 eV Core-core repulsion = 26593.397957 eV Total energy + Delta-G solvation = -4036.804528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -44.18656 -41.54721 -39.16803 -38.29174 -36.58421 -35.82792 -34.02731 -32.82756 -31.89061 -31.01121 -29.91122 -27.64378 -27.33648 -27.05002 -25.20210 -24.67131 -23.82933 -23.34281 -21.90711 -21.49601 -20.62340 -18.87203 -18.40260 -18.15583 -17.51688 -17.33761 -17.18837 -16.78419 -16.67341 -16.50435 -16.19340 -15.91217 -15.70322 -15.36958 -14.95011 -14.89016 -14.49136 -14.22477 -14.09279 -13.55797 -13.43113 -13.35172 -13.26233 -12.94103 -12.80304 -12.71276 -12.50188 -12.41574 -12.27013 -12.20915 -12.03391 -11.99201 -11.85027 -11.78518 -11.58392 -11.32846 -11.29843 -10.90242 -10.81559 -10.75064 -10.56017 -9.47370 -8.22188 -6.33425 0.57459 1.05644 1.40895 1.42725 1.54970 1.67221 2.36786 2.40442 2.80306 2.86932 3.10805 3.12473 3.41238 3.46287 3.49071 3.71782 3.75298 3.84263 3.88566 3.94063 4.04462 4.09360 4.12112 4.18243 4.26524 4.33841 4.43087 4.45759 4.49503 4.57220 4.58727 4.63461 4.63739 4.73720 4.79623 4.80076 4.85293 4.87166 4.94677 4.97305 5.11218 5.26444 5.39801 5.44578 5.57642 5.70464 5.76923 5.91369 6.02798 6.15137 6.81685 7.36298 7.63296 8.89785 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.014045 B = 0.003211 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.109093 B = 8717.618496 C = 9459.265613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.391 6.391 3 C 0.047 3.953 4 C 0.114 3.886 5 N -0.470 5.470 6 C 0.204 3.796 7 C -0.019 4.019 8 C 0.044 3.956 9 C -0.537 4.537 10 H 0.071 0.929 11 C 0.004 3.996 12 N -0.932 5.932 13 Si 0.964 3.036 14 H -0.258 1.258 15 H -0.283 1.283 16 H -0.278 1.278 17 N -0.326 5.326 18 N -0.348 5.348 19 C 0.343 3.657 20 N -0.420 5.420 21 C 0.054 3.946 22 C -0.110 4.110 23 H 0.131 0.869 24 C 0.045 3.955 25 O -0.389 6.389 26 C 0.045 3.955 27 C -0.108 4.108 28 H 0.133 0.867 29 C 0.033 3.967 30 H 0.029 0.971 31 H 0.059 0.941 32 H 0.113 0.887 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.130 0.870 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.091 0.909 39 H -0.017 1.017 40 H 0.000 1.000 41 H 0.263 0.737 42 H 0.055 0.945 43 H 0.100 0.900 44 H 0.052 0.948 45 H 0.116 0.884 46 H 0.049 0.951 47 H 0.116 0.884 48 H 0.106 0.894 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 -8.379 -20.758 22.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.310 6.310 3 C -0.031 4.031 4 C -0.009 4.009 5 N -0.166 5.166 6 C -0.065 4.065 7 C -0.058 4.058 8 C 0.005 3.995 9 C -0.575 4.575 10 H 0.089 0.911 11 C -0.194 4.194 12 N -0.572 5.572 13 Si 0.788 3.212 14 H -0.181 1.181 15 H -0.209 1.209 16 H -0.204 1.204 17 N -0.164 5.164 18 N -0.192 5.192 19 C -0.015 4.015 20 N -0.144 5.144 21 C -0.073 4.073 22 C -0.129 4.129 23 H 0.149 0.851 24 C -0.032 4.032 25 O -0.308 6.308 26 C -0.032 4.032 27 C -0.127 4.127 28 H 0.151 0.849 29 C -0.093 4.093 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.132 0.868 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.148 0.852 36 H 0.131 0.869 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.001 0.999 40 H 0.018 0.982 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.118 0.882 44 H 0.071 0.929 45 H 0.134 0.866 46 H 0.067 0.933 47 H 0.134 0.866 48 H 0.124 0.876 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.167 -7.530 -21.006 22.538 hybrid contribution -1.460 -0.021 1.682 2.227 sum 1.706 -7.551 -19.324 20.817 Atomic orbital electron populations 1.22981 0.78866 1.04513 1.00536 1.87736 1.21774 1.25880 1.95577 1.22854 0.92996 0.86077 1.01148 1.21748 0.92020 0.79381 1.07722 1.46101 1.48393 1.16933 1.05148 1.25354 0.99299 0.89057 0.92756 1.20200 1.00484 1.02066 0.83072 1.18883 0.90469 0.94547 0.95561 1.21602 1.01524 1.37471 0.96929 0.91125 1.25922 0.95646 0.94853 1.02965 1.70109 1.06742 1.41643 1.38701 0.85413 0.78613 0.77957 0.79181 1.18118 1.20907 1.20369 1.73930 1.20779 1.18618 1.03113 1.74420 1.24449 1.16800 1.03545 1.23014 1.01345 0.88348 0.88757 1.62343 1.16625 1.40357 0.95113 1.23260 1.01995 0.91783 0.90239 1.23394 0.96890 0.96603 0.96054 0.85058 1.23721 0.83524 0.95406 1.00507 1.89116 1.29180 1.66928 1.45549 1.23702 0.96823 0.90810 0.91843 1.23350 0.94701 1.01707 0.92953 0.84866 1.23664 0.85812 1.02913 0.96932 0.95214 0.92281 0.86844 0.94528 0.91689 0.85207 0.86892 0.88742 0.89106 0.99865 0.98169 0.92847 0.92626 0.88186 0.92928 0.86552 0.93256 0.86631 0.87583 0.94091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.39 -10.09 10.70 -148.98 -1.59 -11.69 16 3 C 0.05 1.30 5.95 71.98 0.43 1.73 16 4 C 0.11 2.96 5.66 86.38 0.49 3.45 16 5 N -0.47 -15.45 2.81 -514.85 -1.45 -16.90 16 6 C 0.20 8.14 7.32 137.64 1.01 9.15 16 7 C -0.02 -0.76 5.53 29.85 0.16 -0.59 16 8 C 0.04 2.24 4.96 29.85 0.15 2.38 16 9 C -0.54 -29.15 9.11 25.60 0.23 -28.92 16 10 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 11 C 0.00 0.24 5.46 84.66 0.46 0.70 16 12 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 13 Si 0.96 42.92 29.54 68.60 2.03 44.94 16 14 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 N -0.33 -14.35 12.18 -49.54 -0.60 -14.96 16 18 N -0.35 -13.77 10.98 -58.00 -0.64 -14.40 16 19 C 0.34 11.14 6.99 260.11 1.82 12.96 16 20 N -0.42 -10.02 5.42 -692.76 -3.75 -13.77 16 21 C 0.05 1.11 5.64 86.42 0.49 1.60 16 22 C -0.11 -1.56 4.21 -9.04 -0.04 -1.60 16 23 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 24 C 0.05 0.71 7.17 72.46 0.52 1.22 16 25 O -0.39 -7.47 11.65 -148.98 -1.74 -9.21 16 26 C 0.05 0.71 7.17 72.45 0.52 1.23 16 27 C -0.11 -1.51 4.21 -9.03 -0.04 -1.54 16 28 H 0.13 1.27 8.14 -2.39 -0.02 1.26 16 29 C 0.03 0.65 4.50 86.43 0.39 1.04 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.04 1.33 6.23 -2.39 -0.01 1.32 16 34 H 0.07 1.61 5.25 -2.39 -0.01 1.59 16 35 H 0.13 2.69 8.06 -2.39 -0.02 2.67 16 36 H 0.11 2.88 7.25 -2.39 -0.02 2.86 16 37 H 0.09 3.36 7.27 -2.39 -0.02 3.35 16 38 H 0.09 3.68 8.14 -2.38 -0.02 3.66 16 39 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 40 H 0.00 0.00 6.23 -2.38 -0.01 -0.01 16 41 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 42 H 0.06 1.41 6.43 -2.38 -0.02 1.39 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.05 0.96 7.14 -2.39 -0.02 0.94 16 45 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.05 0.91 7.14 -2.39 -0.02 0.89 16 47 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.11 1.84 5.77 -2.39 -0.01 1.83 16 49 H 0.04 0.98 6.94 -2.39 -0.02 0.97 16 Total: -1.00 -72.46 383.95 1.34 -71.12 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.96 Total: 15.29 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 7.84 Total: 4.63 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -6.16 Total: -115.10 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -3.33 Total: -20.89 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.94 kcal Total: -72.46 1.34 -71.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345393661.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.643 kcal (2) G-P(sol) polarization free energy of solvation -72.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds